Wall clock time and date at job start Fri Apr 10 2020 18:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.38218 * 111.00479 * 123.95352 * 2 1 3 5 5 C 1.38761 * 120.14089 * 299.72674 * 4 2 1 6 6 C 1.38253 * 121.32839 * 179.75321 * 5 4 2 7 7 C 1.39211 * 120.37048 * 0.49950 * 6 5 4 8 8 C 1.41453 * 119.31937 * 359.78479 * 7 6 5 9 9 C 1.40919 * 120.35029 * 359.96030 * 8 7 6 10 10 C 1.40216 * 119.06496 * 180.02562 * 9 8 7 11 11 C 1.37695 * 119.96783 * 359.84566 * 10 9 8 12 12 C 1.38821 * 121.38270 * 0.22566 * 11 10 9 13 13 C 1.38815 * 120.14878 * 359.83838 * 12 11 10 14 14 C 1.46969 * 122.12062 * 180.02562 * 13 12 11 15 15 O 1.21633 * 119.83788 * 359.97438 * 14 13 12 16 16 N 1.34651 * 120.32230 * 179.97438 * 14 13 12 17 17 C 1.46495 * 118.79123 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47487 * 90.00323 * 17 16 14 19 19 H 1.08010 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00383 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99960 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47361 * 60.00168 * 22 20 18 24 24 H 1.48498 * 109.46808 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47129 * 299.99822 * 22 20 18 26 26 C 1.34600 * 122.41071 * 0.02562 * 16 14 13 27 27 O 1.21686 * 119.76609 * 180.02562 * 26 16 14 28 28 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 29 29 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 30 30 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 32 32 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 33 33 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 34 34 H 1.08002 * 119.33312 * 0.02562 * 5 4 2 35 35 H 1.07996 * 119.81280 * 180.28722 * 6 5 4 36 36 H 1.08000 * 120.01630 * 179.97438 * 10 9 8 37 37 H 1.08004 * 119.30930 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.92957 * 179.86515 * 12 11 10 39 39 H 1.09004 * 109.46844 * 210.00241 * 17 16 14 40 40 H 1.09002 * 109.47302 * 330.00012 * 17 16 14 41 41 H 0.96999 * 120.00019 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9644 -0.7207 1.0703 5 6 1.6587 -0.3387 2.3688 6 6 2.1368 -1.0446 3.4572 7 6 2.9512 -2.1581 3.2713 8 6 3.2813 -2.5632 1.9568 9 6 2.7901 -1.8475 0.8467 10 6 3.1338 -2.2730 -0.4444 11 6 3.9431 -3.3742 -0.6130 12 6 4.4306 -4.0863 0.4743 13 6 4.1089 -3.6932 1.7662 14 6 4.6013 -4.4148 2.9481 15 8 5.3144 -5.3902 2.8080 16 7 4.2669 -4.0014 4.1851 17 6 4.7770 -4.7452 5.3395 18 6 6.1003 -4.1644 5.7666 19 1 6.5198 -3.3254 5.2313 20 6 6.7757 -4.7042 6.8407 21 7 6.2647 -5.7255 7.4928 22 14 8.4158 -3.9837 7.3704 23 1 8.2333 -2.5574 7.7414 24 1 8.9322 -4.7370 8.5413 25 1 9.3853 -4.0836 6.2501 26 6 3.4813 -2.9298 4.3999 27 8 3.2098 -2.5982 5.5388 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7044 1.8723 0.9233 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.0311 0.5249 2.5324 35 1 1.8797 -0.7283 4.4573 36 1 2.7655 -1.7361 -1.3061 37 1 4.2015 -3.6924 -1.6123 38 1 5.0620 -4.9480 0.3148 39 1 4.0656 -4.6718 6.1622 40 1 4.9106 -5.7921 5.0671 41 1 6.7397 -6.1049 8.2487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016671076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:24 Heat of formation + Delta-G solvation = 1.279454 kcal Electronic energy + Delta-G solvation = -27143.858511 eV Core-core repulsion = 23375.276656 eV Total energy + Delta-G solvation = -3768.581855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55040 -39.89239 -38.38489 -37.73273 -35.55851 -34.53347 -32.99205 -31.97193 -30.63580 -29.10851 -28.02431 -27.66813 -25.63580 -24.49265 -23.44108 -22.92766 -22.40226 -21.31662 -18.63894 -17.89237 -17.69141 -16.92727 -16.70062 -16.18584 -15.66718 -15.53290 -15.13586 -15.00304 -14.66613 -14.32049 -14.10329 -13.78964 -13.61166 -13.33868 -13.30596 -13.02582 -12.95047 -12.75917 -12.34351 -12.20068 -12.12312 -11.80060 -11.37912 -11.25570 -11.20106 -11.05649 -10.62019 -10.33528 -9.95675 -9.83542 -9.59153 -9.55371 -9.00618 -8.89233 -8.48843 -8.42253 -7.96653 -6.05003 -4.08779 -0.22630 0.85197 1.39969 2.18675 3.06284 3.26296 3.36081 3.36529 3.38348 3.43394 3.45688 4.25757 4.28574 4.45587 4.47134 4.56226 4.66887 4.74756 4.87746 4.90067 4.98306 5.06629 5.08815 5.17983 5.28621 5.31467 5.34759 5.46448 5.48150 5.63525 5.71425 5.84483 5.97635 6.06572 6.24520 6.29383 6.30781 6.36359 6.61114 6.67548 6.95756 7.07696 7.34255 7.87198 7.87468 8.13940 8.26282 8.52526 8.90416 9.54189 11.04980 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.003826 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.964025 B = 7317.215449 C = 8040.127585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.514 5.514 3 C 0.026 3.974 4 C 0.143 3.857 5 C -0.169 4.169 6 C -0.015 4.015 7 C -0.142 4.142 8 C 0.007 3.993 9 C -0.054 4.054 10 C -0.046 4.046 11 C -0.142 4.142 12 C -0.019 4.019 13 C -0.146 4.146 14 C 0.560 3.440 15 O -0.486 6.486 16 N -0.543 5.543 17 C 0.229 3.771 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.275 1.275 26 C 0.560 3.440 27 O -0.487 6.487 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 12.597 -19.405 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.235 5.235 3 C -0.120 4.120 4 C 0.048 3.952 5 C -0.189 4.189 6 C -0.035 4.035 7 C -0.145 4.145 8 C 0.006 3.994 9 C -0.055 4.055 10 C -0.064 4.064 11 C -0.160 4.160 12 C -0.038 4.038 13 C -0.149 4.149 14 C 0.350 3.650 15 O -0.360 6.360 16 N -0.283 5.283 17 C 0.112 3.888 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.530 5.530 22 Si 0.729 3.271 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.201 1.201 26 C 0.350 3.650 27 O -0.362 6.362 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.812 11.893 -19.134 25.438 hybrid contribution 0.649 0.822 1.122 1.534 sum -11.164 12.715 -18.012 24.713 Atomic orbital electron populations 1.22516 0.85074 1.03000 1.01424 1.59092 1.08933 1.14507 1.40930 1.22521 1.01404 0.86756 1.01316 1.18871 0.94365 0.92971 0.88985 1.21549 1.03297 1.01673 0.92431 1.21143 0.91376 0.91082 0.99852 1.19953 1.03091 0.99208 0.92294 1.17993 0.95155 0.93936 0.92339 1.17523 0.99409 0.95505 0.93031 1.21502 0.94045 0.94642 0.96211 1.21187 0.99393 0.96397 0.99046 1.21408 0.94398 0.97678 0.90322 1.19876 1.02672 0.97753 0.94611 1.17987 0.80203 0.84085 0.82724 1.90800 1.33761 1.25420 1.86011 1.46797 1.43843 1.27565 1.10056 1.19705 0.95431 0.92457 0.81185 1.21147 1.04169 1.16502 1.14701 0.92515 1.24869 0.98183 0.94843 0.95827 1.69915 1.39029 1.23313 1.20790 0.86487 0.83330 0.79160 0.78076 1.20111 1.20989 1.20073 1.17889 0.78300 0.80231 0.88621 1.90814 1.56103 1.66199 1.23045 0.90499 0.94614 0.90814 0.94577 0.90754 0.90510 0.85203 0.83826 0.83907 0.84764 0.83834 0.92654 0.92637 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.27 60.07 0.56 0.72 16 2 N -0.51 -4.17 4.15 -186.52 -0.77 -4.94 16 3 C 0.03 0.17 9.37 60.07 0.56 0.73 16 4 C 0.14 1.53 4.72 -83.56 -0.39 1.13 16 5 C -0.17 -1.82 8.52 -39.38 -0.34 -2.15 16 6 C -0.02 -0.21 9.62 -39.21 -0.38 -0.58 16 7 C -0.14 -2.45 5.89 -104.93 -0.62 -3.07 16 8 C 0.01 0.12 5.77 -106.47 -0.61 -0.50 16 9 C -0.05 -0.67 5.74 -106.91 -0.61 -1.29 16 10 C -0.05 -0.47 9.61 -39.04 -0.38 -0.85 16 11 C -0.14 -1.46 9.97 -39.56 -0.39 -1.86 16 12 C -0.02 -0.26 9.65 -39.15 -0.38 -0.64 16 13 C -0.15 -2.51 5.88 -104.96 -0.62 -3.12 16 14 C 0.56 12.33 7.60 -12.78 -0.10 12.23 16 15 O -0.49 -11.88 15.92 5.25 0.08 -11.80 16 16 N -0.54 -13.05 2.54 -119.52 -0.30 -13.35 16 17 C 0.23 6.45 4.75 -5.20 -0.02 6.43 16 18 C -0.53 -15.82 9.37 -34.44 -0.32 -16.15 16 19 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 21 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 22 Si 0.90 22.65 29.54 -169.99 -5.02 17.63 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.56 12.31 7.58 -12.95 -0.10 12.21 16 27 O -0.49 -11.91 15.89 5.20 0.08 -11.83 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.21 7.22 -51.93 -0.38 -0.17 16 30 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.04 0.22 7.27 -51.93 -0.38 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 1.06 6.94 -52.49 -0.36 0.69 16 35 H 0.14 1.88 7.74 -52.49 -0.41 1.47 16 36 H 0.14 1.16 7.60 -52.49 -0.40 0.76 16 37 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.14 1.85 7.76 -52.48 -0.41 1.44 16 39 H 0.06 1.64 7.32 -51.93 -0.38 1.26 16 40 H 0.06 1.65 7.32 -51.93 -0.38 1.27 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -35.21 347.29 -8.95 -44.16 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.75 Total: -3.64 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -4.24 Total: 5.10 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.34 Total: -44.86 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.17 Total: -23.62 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.21 -8.95 -44.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016671076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.436 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds