Wall clock time and date at job start Fri Apr 10 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.38218 * 111.00479 * 123.95352 * 2 1 3 5 5 C 1.38761 * 120.14089 * 299.72674 * 4 2 1 6 6 C 1.38253 * 121.32839 * 179.75321 * 5 4 2 7 7 C 1.39211 * 120.37048 * 0.49950 * 6 5 4 8 8 C 1.41453 * 119.31937 * 359.78479 * 7 6 5 9 9 C 1.40919 * 120.35029 * 359.96030 * 8 7 6 10 10 C 1.40216 * 119.06496 * 180.02562 * 9 8 7 11 11 C 1.37695 * 119.96783 * 359.84566 * 10 9 8 12 12 C 1.38821 * 121.38270 * 0.22566 * 11 10 9 13 13 C 1.38815 * 120.14878 * 359.83838 * 12 11 10 14 14 C 1.46969 * 122.12062 * 180.02562 * 13 12 11 15 15 O 1.21633 * 119.83788 * 359.97438 * 14 13 12 16 16 N 1.34651 * 120.32230 * 179.97438 * 14 13 12 17 17 C 1.46495 * 118.79123 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47487 * 90.00323 * 17 16 14 19 19 H 1.08010 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00383 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99960 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47361 * 60.00168 * 22 20 18 24 24 H 1.48498 * 109.46808 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47129 * 299.99822 * 22 20 18 26 26 C 1.34600 * 122.41071 * 0.02562 * 16 14 13 27 27 O 1.21686 * 119.76609 * 180.02562 * 26 16 14 28 28 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 29 29 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 30 30 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 32 32 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 33 33 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 34 34 H 1.08002 * 119.33312 * 0.02562 * 5 4 2 35 35 H 1.07996 * 119.81280 * 180.28722 * 6 5 4 36 36 H 1.08000 * 120.01630 * 179.97438 * 10 9 8 37 37 H 1.08004 * 119.30930 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.92957 * 179.86515 * 12 11 10 39 39 H 1.09004 * 109.46844 * 210.00241 * 17 16 14 40 40 H 1.09002 * 109.47302 * 330.00012 * 17 16 14 41 41 H 0.96999 * 120.00019 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9644 -0.7207 1.0703 5 6 1.6587 -0.3387 2.3688 6 6 2.1368 -1.0446 3.4572 7 6 2.9512 -2.1581 3.2713 8 6 3.2813 -2.5632 1.9568 9 6 2.7901 -1.8475 0.8467 10 6 3.1338 -2.2730 -0.4444 11 6 3.9431 -3.3742 -0.6130 12 6 4.4306 -4.0863 0.4743 13 6 4.1089 -3.6932 1.7662 14 6 4.6013 -4.4148 2.9481 15 8 5.3144 -5.3902 2.8080 16 7 4.2669 -4.0014 4.1851 17 6 4.7770 -4.7452 5.3395 18 6 6.1003 -4.1644 5.7666 19 1 6.5198 -3.3254 5.2313 20 6 6.7757 -4.7042 6.8407 21 7 6.2647 -5.7255 7.4928 22 14 8.4158 -3.9837 7.3704 23 1 8.2333 -2.5574 7.7414 24 1 8.9322 -4.7370 8.5413 25 1 9.3853 -4.0836 6.2501 26 6 3.4813 -2.9298 4.3999 27 8 3.2098 -2.5982 5.5388 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7044 1.8723 0.9233 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.0311 0.5249 2.5324 35 1 1.8797 -0.7283 4.4573 36 1 2.7655 -1.7361 -1.3061 37 1 4.2015 -3.6924 -1.6123 38 1 5.0620 -4.9480 0.3148 39 1 4.0656 -4.6718 6.1622 40 1 4.9106 -5.7921 5.0671 41 1 6.7397 -6.1049 8.2487 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016671076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:23 Heat of formation + Delta-G solvation = -22.291333 kcal Electronic energy + Delta-G solvation = -27144.880617 eV Core-core repulsion = 23375.276656 eV Total energy + Delta-G solvation = -3769.603961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.92005 -41.12998 -39.96356 -38.76837 -36.62952 -36.41836 -34.99675 -33.34449 -31.70641 -30.21336 -29.67885 -28.47585 -26.68659 -26.10298 -24.92473 -24.07367 -23.75858 -22.61965 -20.00212 -19.24326 -18.96306 -18.65493 -18.24475 -17.26035 -17.10075 -17.02021 -16.49743 -16.05646 -16.02490 -15.72383 -15.41978 -15.09191 -15.06793 -14.60340 -14.52620 -14.16999 -14.02193 -13.95467 -13.59414 -13.22068 -13.17704 -13.05438 -12.76111 -12.69439 -12.57501 -12.39961 -12.27987 -12.21396 -12.01380 -11.34559 -11.29088 -10.98956 -10.74627 -10.51946 -9.89778 -9.62862 -9.04583 -8.35570 -6.50445 -1.35153 -0.14566 0.23118 0.80984 1.29910 1.36186 1.43411 1.66792 1.84426 2.08380 2.32311 2.65374 2.87139 2.97645 2.98674 3.44509 3.55514 3.61774 3.82234 3.97215 4.08759 4.17594 4.33999 4.38701 4.46732 4.56079 4.59891 4.65474 4.67784 4.70788 4.77348 4.93756 4.94986 4.99425 5.08281 5.08893 5.12088 5.26704 5.30776 5.35896 5.52046 5.73145 5.82380 5.82527 6.08292 6.17358 6.50622 6.55772 6.81090 7.18355 8.75272 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.003826 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.964025 B = 7317.215449 C = 8040.127585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.516 5.516 3 C 0.022 3.978 4 C 0.182 3.818 5 C -0.174 4.174 6 C 0.009 3.991 7 C -0.192 4.192 8 C 0.010 3.990 9 C -0.072 4.072 10 C -0.009 4.009 11 C -0.139 4.139 12 C 0.002 3.998 13 C -0.194 4.194 14 C 0.553 3.447 15 O -0.533 6.533 16 N -0.559 5.559 17 C 0.247 3.753 18 C -0.552 4.552 19 H 0.047 0.953 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.977 3.023 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.554 3.446 27 O -0.535 6.535 28 H 0.100 0.900 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.145 0.855 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 16.118 -23.695 31.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.238 5.238 3 C -0.123 4.123 4 C 0.087 3.913 5 C -0.194 4.194 6 C -0.010 4.010 7 C -0.195 4.195 8 C 0.009 3.991 9 C -0.073 4.073 10 C -0.027 4.027 11 C -0.156 4.156 12 C -0.017 4.017 13 C -0.197 4.197 14 C 0.348 3.652 15 O -0.411 6.411 16 N -0.297 5.297 17 C 0.127 3.873 18 C -0.590 4.590 19 H 0.066 0.934 20 C -0.188 4.188 21 N -0.562 5.562 22 Si 0.800 3.200 23 H -0.192 1.192 24 H -0.192 1.192 25 H -0.192 1.192 26 C 0.348 3.652 27 O -0.413 6.413 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.183 0.817 35 H 0.161 0.839 36 H 0.199 0.801 37 H 0.198 0.802 38 H 0.163 0.837 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.790 15.438 -23.468 30.865 hybrid contribution 0.762 -0.155 2.216 2.349 sum -12.028 15.283 -21.251 28.808 Atomic orbital electron populations 1.22641 0.83362 1.03261 1.03065 1.59236 1.10243 1.15404 1.38888 1.22639 1.01224 0.85611 1.02818 1.19092 0.91117 0.91259 0.89854 1.21806 1.03709 1.02386 0.91451 1.21324 0.89143 0.89377 1.01193 1.19620 1.07309 1.01438 0.91095 1.17975 0.94819 0.93652 0.92666 1.17773 1.00350 0.96232 0.92940 1.21990 0.91263 0.93420 0.96035 1.21587 0.98652 0.95737 0.99646 1.21697 0.92825 0.97333 0.89799 1.19576 1.06703 0.99827 0.93570 1.18866 0.79271 0.83791 0.83316 1.90737 1.36271 1.27568 1.86529 1.46858 1.44664 1.28292 1.09926 1.19059 0.94507 0.91575 0.82126 1.21363 1.05214 1.16790 1.15640 0.93428 1.25920 1.02469 0.95046 0.95405 1.70037 1.40782 1.24268 1.21112 0.85336 0.77860 0.78645 0.78203 1.19237 1.19156 1.19166 1.18736 0.77110 0.79496 0.89848 1.90751 1.58083 1.67440 1.25044 0.88119 0.93822 0.91320 0.93990 0.91319 0.88044 0.81667 0.83870 0.80143 0.80198 0.83748 0.95679 0.95636 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.27 127.69 1.18 1.34 16 2 N -0.52 -5.41 4.15 -744.03 -3.09 -8.50 16 3 C 0.02 0.16 9.37 127.69 1.20 1.36 16 4 C 0.18 3.12 4.72 39.06 0.18 3.31 16 5 C -0.17 -3.16 8.52 22.40 0.19 -2.97 16 6 C 0.01 0.25 9.62 22.51 0.22 0.47 16 7 C -0.19 -6.92 5.89 -20.06 -0.12 -7.03 16 8 C 0.01 0.33 5.77 -21.06 -0.12 0.21 16 9 C -0.07 -1.57 5.74 -21.34 -0.12 -1.69 16 10 C -0.01 -0.15 9.61 22.62 0.22 0.07 16 11 C -0.14 -2.24 9.97 22.28 0.22 -2.01 16 12 C 0.00 0.06 9.65 22.55 0.22 0.28 16 13 C -0.19 -6.93 5.88 -20.08 -0.12 -7.05 16 14 C 0.55 26.74 7.60 86.55 0.66 27.40 16 15 O -0.53 -28.69 15.92 -4.13 -0.07 -28.75 16 16 N -0.56 -29.80 2.54 -768.68 -1.95 -31.75 16 17 C 0.25 15.42 4.75 85.63 0.41 15.83 16 18 C -0.55 -35.71 9.37 25.60 0.24 -35.47 16 19 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 20 C 0.01 0.71 5.46 84.66 0.46 1.17 16 21 N -0.92 -59.46 13.29 21.45 0.28 -59.18 16 22 Si 0.98 48.00 29.54 68.60 2.03 50.03 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.55 26.83 7.58 86.46 0.66 27.49 16 27 O -0.54 -28.89 15.89 -4.30 -0.07 -28.95 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.04 0.27 7.22 -2.39 -0.02 0.25 16 30 H 0.07 0.59 8.12 -2.38 -0.02 0.57 16 31 H 0.04 0.29 7.27 -2.39 -0.02 0.27 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.17 1.88 6.94 -2.91 -0.02 1.86 16 35 H 0.14 3.82 7.74 -2.91 -0.02 3.80 16 36 H 0.18 1.57 7.60 -2.91 -0.02 1.54 16 37 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 3.69 7.76 -2.91 -0.02 3.67 16 39 H 0.03 1.68 7.32 -2.39 -0.02 1.66 16 40 H 0.03 1.70 7.32 -2.39 -0.02 1.69 16 41 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -87.45 347.29 3.78 -83.67 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.07 Total: 0.75 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 5.57 Total: 22.69 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.75 Total: -99.43 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -0.13 Total: -57.71 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -87.45 3.78 -83.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016671076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.380 kcal (2) G-P(sol) polarization free energy of solvation -87.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds