Wall clock time and date at job start Fri Apr 10 2020 18:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76192 * 126.48644 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00087 * 359.97375 * 6 5 4 8 8 C 1.50696 * 109.47158 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99933 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47222 * 89.99945 * 11 10 8 13 13 H 1.07994 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00360 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99469 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47354 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47206 * 120.00046 * 16 14 12 19 19 H 1.48502 * 109.47026 * 239.99701 * 16 14 12 20 20 C 1.46498 * 119.99962 * 359.97438 * 10 8 7 21 21 C 1.53001 * 109.47156 * 90.00180 * 20 10 8 22 22 C 1.47202 * 109.47074 * 180.02562 * 21 20 10 23 23 N 8.23426 * 144.92396 * 17.74630 * 2 1 3 24 24 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 25 25 N 1.36599 * 127.14525 * 180.02562 * 24 5 4 26 26 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 27 27 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 28 28 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 29 29 H 1.09000 * 109.46608 * 299.99574 * 7 6 5 30 30 H 1.08995 * 109.46795 * 60.00035 * 7 6 5 31 31 H 1.08999 * 109.47350 * 209.99838 * 11 10 8 32 32 H 1.09000 * 109.47209 * 329.99768 * 11 10 8 33 33 H 0.97000 * 119.99769 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.47005 * 210.00266 * 20 10 8 35 35 H 1.09000 * 109.47039 * 329.99995 * 20 10 8 36 36 H 1.08999 * 109.46798 * 299.99779 * 21 20 10 37 37 H 1.09000 * 109.47298 * 59.99973 * 21 20 10 38 38 H 1.00900 * 111.00328 * 89.97471 * 25 24 5 39 39 H 1.00903 * 110.99821 * 213.93114 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5773 0.0016 7 6 6.3068 -0.2512 0.0021 8 6 7.6896 -0.8501 0.0026 9 8 7.8287 -2.0549 0.0030 10 7 8.7719 -0.0468 0.0036 11 6 10.1162 -0.6291 0.0045 12 6 10.5783 -0.8285 -1.4160 13 1 9.9348 -0.5498 -2.2373 14 6 11.8222 -1.3677 -1.6669 15 7 12.6056 -1.7075 -0.6668 16 14 12.3952 -1.6142 -3.4277 17 1 11.3363 -1.1546 -4.3619 18 1 13.6348 -0.8300 -3.6593 19 1 12.6700 -3.0547 -3.6618 20 6 8.6039 1.4085 0.0037 21 6 8.5444 1.9149 1.4462 22 6 8.3750 3.3772 1.4463 23 7 8.2458 4.5068 1.4423 24 7 2.3175 -1.1016 0.0002 25 7 1.9291 -2.4112 0.0005 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 6.1782 0.3645 -0.8881 30 1 6.1769 0.3648 0.8919 31 1 10.8029 0.0431 0.5190 32 1 10.0955 -1.5902 0.5182 33 1 13.4806 -2.0872 -0.8434 34 1 9.4468 1.8715 -0.5095 35 1 7.6786 1.6675 -0.5109 36 1 7.7015 1.4519 1.9593 37 1 9.4697 1.6559 1.9607 38 1 1.8265 -2.7578 0.9426 39 1 1.0771 -2.5358 -0.5254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022529940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:35 Heat of formation + Delta-G solvation = 97.639795 kcal Electronic energy + Delta-G solvation = -24173.803863 eV Core-core repulsion = 20473.596865 eV Total energy + Delta-G solvation = -3700.206998 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.19111 -39.34046 -36.83422 -36.80007 -35.31499 -32.97121 -32.79626 -30.88194 -30.25834 -30.07253 -28.06531 -26.85039 -24.05641 -23.12615 -22.77583 -21.84716 -19.21514 -18.39031 -17.82510 -17.61214 -17.03755 -16.73591 -16.46273 -15.60473 -15.48681 -15.04324 -14.76059 -14.68759 -14.19148 -13.92578 -13.64700 -13.52416 -13.25933 -13.05048 -12.70784 -12.41756 -12.32524 -12.22585 -12.04761 -11.70834 -11.59440 -11.31364 -11.01715 -10.97694 -10.86457 -10.66569 -10.38180 -10.21880 -10.14198 -9.86293 -9.73011 -9.28794 -8.49447 -7.96634 -7.63693 -6.11115 -4.15740 0.90243 1.30694 1.91048 2.01748 2.49236 2.76380 2.87492 3.10108 3.28250 3.36592 3.40279 3.60259 3.66488 4.10922 4.16592 4.40492 4.64970 4.80451 4.87903 4.99091 5.02444 5.03492 5.18662 5.23506 5.24938 5.35529 5.40339 5.50795 5.63166 5.82430 6.02476 6.07802 6.82328 7.03712 7.27280 7.35342 7.63717 7.84638 8.09758 8.13582 8.33365 8.67041 8.90128 9.50048 10.97130 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003325 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.350570 B = 8419.808411 C = 9939.220743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.140 3.860 3 N -0.270 5.270 4 N -0.294 5.294 5 C 0.174 3.826 6 S 0.110 5.890 7 C -0.157 4.157 8 C 0.527 3.473 9 O -0.519 6.519 10 N -0.587 5.587 11 C 0.245 3.755 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.113 3.887 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.443 5.443 24 N -0.311 5.311 25 N -0.583 5.583 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.367 0.633 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.387 0.072 4.370 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.131 4.131 3 N -0.111 5.111 4 N -0.140 5.140 5 C -0.200 4.200 6 S 0.337 5.663 7 C -0.309 4.309 8 C 0.311 3.689 9 O -0.395 6.395 10 N -0.318 5.318 11 C 0.126 3.874 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.013 4.013 21 C -0.091 4.091 22 C -0.102 4.102 23 N -0.120 5.120 24 N -0.095 5.095 25 N -0.215 5.215 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.185 0.815 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -21.028 1.151 4.044 21.444 hybrid contribution -1.127 -0.292 -0.498 1.267 sum -22.155 0.859 3.547 22.453 Atomic orbital electron populations 1.20198 0.83453 1.04571 1.04240 1.25505 0.97113 0.83201 1.07278 1.73943 0.96631 1.23336 1.17205 1.74840 1.11649 1.05842 1.21647 1.27392 0.91083 0.95269 1.06267 1.86605 0.85599 1.02677 1.91378 1.23997 0.96005 1.02076 1.08828 1.19329 0.84411 0.87145 0.78025 1.90743 1.85687 1.13791 1.49321 1.48120 1.08227 1.04486 1.70980 1.19440 0.74852 0.95151 0.97929 1.21446 1.00977 1.42234 0.92208 0.92169 1.24908 0.96492 0.95086 0.97430 1.69923 1.09969 1.42603 1.30679 0.86455 0.78527 0.77967 0.84572 1.19722 1.20982 1.20864 1.21402 1.04253 0.82262 0.93391 1.19863 1.06084 0.81818 1.01337 1.29069 0.92855 0.95038 0.93216 1.81247 1.09367 1.12900 1.08487 1.44995 1.05251 1.02158 1.57047 1.59583 1.42819 0.97252 1.21818 0.89318 0.90948 0.88155 0.85986 0.86289 0.94333 0.93299 0.92675 0.88350 0.90275 0.87598 0.86368 0.81508 0.80708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.18 36.01 0.37 0.05 16 2 C 0.14 1.44 8.13 -153.99 -1.25 0.19 16 3 N -0.27 -3.82 12.18 33.00 0.40 -3.42 16 4 N -0.29 -4.44 11.60 30.68 0.36 -4.08 16 5 C 0.17 2.34 8.20 -88.34 -0.72 1.62 16 6 S 0.11 1.54 21.40 -107.50 -2.30 -0.76 16 7 C -0.16 -2.18 4.27 36.00 0.15 -2.02 16 8 C 0.53 9.49 7.69 -10.99 -0.08 9.40 16 9 O -0.52 -11.54 15.44 5.56 0.09 -11.46 16 10 N -0.59 -10.48 2.46 -175.06 -0.43 -10.91 16 11 C 0.24 5.64 5.16 -5.19 -0.03 5.61 16 12 C -0.53 -13.90 9.39 -34.44 -0.32 -14.23 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 16 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.11 1.51 5.17 -4.04 -0.02 1.49 16 21 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 22 C 0.22 2.77 15.44 -20.73 -0.32 2.45 16 23 N -0.44 -6.88 18.54 42.19 0.78 -6.10 16 24 N -0.31 -3.24 3.81 -9.93 -0.04 -3.27 16 25 N -0.58 -3.82 10.41 60.35 0.63 -3.19 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.12 1.61 7.40 -51.92 -0.38 1.22 16 30 H 0.12 1.39 7.18 -51.92 -0.37 1.02 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 36 H 0.11 0.95 7.22 -51.93 -0.37 0.57 16 37 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.37 1.59 9.21 -181.37 -1.67 -0.08 16 39 H 0.38 1.27 8.85 -181.36 -1.60 -0.33 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -36.31 363.64 -9.03 -45.34 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -7.20 Total: -4.73 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.51 Total: 5.46 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 2.44 Total: -55.39 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.30 Total: -0.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.31 -9.03 -45.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022529940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.977 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds