Wall clock time and date at job start Fri Apr 10 2020 18:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76192 * 126.48644 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00087 * 359.97375 * 6 5 4 8 8 C 1.50696 * 109.47158 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99933 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47222 * 89.99945 * 11 10 8 13 13 H 1.07994 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99740 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00360 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99469 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47354 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47206 * 120.00046 * 16 14 12 19 19 H 1.48502 * 109.47026 * 239.99701 * 16 14 12 20 20 C 1.46498 * 119.99962 * 359.97438 * 10 8 7 21 21 C 1.53001 * 109.47156 * 90.00180 * 20 10 8 22 22 C 1.47202 * 109.47074 * 180.02562 * 21 20 10 23 23 N 8.23426 * 144.92396 * 17.74630 * 2 1 3 24 24 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 25 25 N 1.36599 * 127.14525 * 180.02562 * 24 5 4 26 26 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 27 27 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 28 28 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 29 29 H 1.09000 * 109.46608 * 299.99574 * 7 6 5 30 30 H 1.08995 * 109.46795 * 60.00035 * 7 6 5 31 31 H 1.08999 * 109.47350 * 209.99838 * 11 10 8 32 32 H 1.09000 * 109.47209 * 329.99768 * 11 10 8 33 33 H 0.97000 * 119.99769 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.47005 * 210.00266 * 20 10 8 35 35 H 1.09000 * 109.47039 * 329.99995 * 20 10 8 36 36 H 1.08999 * 109.46798 * 299.99779 * 21 20 10 37 37 H 1.09000 * 109.47298 * 59.99973 * 21 20 10 38 38 H 1.00900 * 111.00328 * 89.97471 * 25 24 5 39 39 H 1.00903 * 110.99821 * 213.93114 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5773 0.0016 7 6 6.3068 -0.2512 0.0021 8 6 7.6896 -0.8501 0.0026 9 8 7.8287 -2.0549 0.0030 10 7 8.7719 -0.0468 0.0036 11 6 10.1162 -0.6291 0.0045 12 6 10.5783 -0.8285 -1.4160 13 1 9.9348 -0.5498 -2.2373 14 6 11.8222 -1.3677 -1.6669 15 7 12.6056 -1.7075 -0.6668 16 14 12.3952 -1.6142 -3.4277 17 1 11.3363 -1.1546 -4.3619 18 1 13.6348 -0.8300 -3.6593 19 1 12.6700 -3.0547 -3.6618 20 6 8.6039 1.4085 0.0037 21 6 8.5444 1.9149 1.4462 22 6 8.3750 3.3772 1.4463 23 7 8.2458 4.5068 1.4423 24 7 2.3175 -1.1016 0.0002 25 7 1.9291 -2.4112 0.0005 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 6.1782 0.3645 -0.8881 30 1 6.1769 0.3648 0.8919 31 1 10.8029 0.0431 0.5190 32 1 10.0955 -1.5902 0.5182 33 1 13.4806 -2.0872 -0.8434 34 1 9.4468 1.8715 -0.5095 35 1 7.6786 1.6675 -0.5109 36 1 7.7015 1.4519 1.9593 37 1 9.4697 1.6559 1.9607 38 1 1.8265 -2.7578 0.9426 39 1 1.0771 -2.5358 -0.5254 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022529940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:34 Heat of formation + Delta-G solvation = 73.316788 kcal Electronic energy + Delta-G solvation = -24174.858587 eV Core-core repulsion = 20473.596865 eV Total energy + Delta-G solvation = -3701.261722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.05229 -40.80068 -38.00486 -37.54322 -36.73862 -34.88211 -33.49646 -32.23900 -31.51605 -30.81845 -28.94987 -28.42237 -25.34535 -24.67264 -23.89260 -22.61635 -20.40570 -19.42024 -18.81930 -18.50595 -18.33988 -18.06060 -17.99251 -16.97487 -16.51180 -16.21660 -16.13076 -15.73994 -15.43965 -14.99475 -14.71034 -14.45898 -14.30819 -14.00664 -13.64863 -13.63562 -13.57547 -13.55574 -13.22626 -13.07189 -12.91669 -12.70968 -12.52299 -12.38497 -12.16356 -11.95130 -11.86349 -11.63462 -11.36605 -11.02119 -10.81255 -10.56595 -10.53822 -9.55396 -8.67853 -8.16409 -6.27726 -0.10347 0.47640 0.95390 1.17808 1.41521 1.44308 1.54295 1.57914 1.59872 1.78222 1.84403 2.24578 2.46000 3.05174 3.14848 3.16562 3.54355 3.59440 3.96961 4.01973 4.08245 4.12660 4.32102 4.33954 4.56501 4.57404 4.58286 4.81289 4.82111 5.04747 5.05521 5.09388 5.35452 5.59240 5.69500 5.85392 6.13772 6.40024 6.57830 6.63013 6.81560 7.23905 7.43222 7.44068 8.90705 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003325 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.350570 B = 8419.808411 C = 9939.220743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.158 3.842 3 N -0.318 5.318 4 N -0.319 5.319 5 C 0.160 3.840 6 S 0.093 5.907 7 C -0.143 4.143 8 C 0.526 3.474 9 O -0.568 6.568 10 N -0.586 5.586 11 C 0.260 3.740 12 C -0.540 4.540 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.956 3.044 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.284 1.284 20 C 0.110 3.890 21 C -0.038 4.038 22 C 0.244 3.756 23 N -0.489 5.489 24 N -0.308 5.308 25 N -0.585 5.585 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.041 0.959 32 H 0.011 0.989 33 H 0.265 0.735 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.381 0.619 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.704 0.217 4.081 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 N -0.159 5.159 4 N -0.164 5.164 5 C -0.215 4.215 6 S 0.320 5.680 7 C -0.294 4.294 8 C 0.312 3.688 9 O -0.447 6.447 10 N -0.316 5.316 11 C 0.139 3.861 12 C -0.579 4.579 13 H 0.072 0.928 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.210 1.210 20 C -0.015 4.015 21 C -0.079 4.079 22 C -0.073 4.073 23 N -0.167 5.167 24 N -0.090 5.090 25 N -0.221 5.221 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.150 0.850 30 H 0.163 0.837 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.201 0.799 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -23.389 1.335 3.756 23.727 hybrid contribution -0.542 -0.401 -0.400 0.784 sum -23.932 0.934 3.356 24.184 Atomic orbital electron populations 1.20515 0.79617 1.06446 1.05920 1.26456 0.98871 0.82247 1.03750 1.73872 0.96805 1.25271 1.19953 1.74717 1.12696 1.06721 1.22306 1.27154 0.91789 0.95054 1.07525 1.86638 0.86320 1.02970 1.92077 1.23824 0.93077 1.02000 1.10522 1.19903 0.85757 0.86514 0.76622 1.90720 1.86633 1.16030 1.51356 1.47952 1.06537 1.06384 1.70772 1.18920 0.77492 0.93807 0.95892 1.21773 1.00908 1.41668 0.93514 0.92769 1.25672 0.96872 0.95062 1.00977 1.70017 1.10366 1.43582 1.32457 0.85541 0.78308 0.77672 0.80341 1.19327 1.20022 1.21039 1.21590 1.05171 0.79339 0.95398 1.19837 1.07803 0.80488 0.99794 1.29196 0.91323 0.94971 0.91793 1.81285 1.11155 1.14335 1.09940 1.45024 1.04359 1.03602 1.56001 1.59635 1.44169 0.95039 1.23302 0.87542 0.87679 0.87666 0.84960 0.83721 0.94124 0.97046 0.92560 0.89041 0.88000 0.84921 0.85446 0.79882 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.18 71.24 0.73 0.32 16 2 C 0.16 2.90 8.13 137.63 1.12 4.02 16 3 N -0.32 -8.63 12.18 -49.52 -0.60 -9.23 16 4 N -0.32 -9.30 11.60 -56.86 -0.66 -9.96 16 5 C 0.16 4.13 8.20 179.55 1.47 5.60 16 6 S 0.09 2.54 21.40 -56.49 -1.21 1.33 16 7 C -0.14 -3.79 4.27 71.23 0.30 -3.49 16 8 C 0.53 18.83 7.69 87.66 0.67 19.50 16 9 O -0.57 -25.82 15.44 -3.03 -0.05 -25.87 16 10 N -0.59 -20.75 2.46 -826.15 -2.03 -22.78 16 11 C 0.26 12.19 5.16 85.64 0.44 12.63 16 12 C -0.54 -28.66 9.39 25.60 0.24 -28.42 16 13 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 14 C 0.01 0.74 5.46 84.66 0.46 1.20 16 15 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 16 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C 0.11 2.77 5.17 86.38 0.45 3.22 16 21 C -0.04 -0.74 6.03 28.79 0.17 -0.57 16 22 C 0.24 5.83 15.44 89.43 1.38 7.22 16 23 N -0.49 -14.72 18.54 20.02 0.37 -14.35 16 24 N -0.31 -5.79 3.81 -185.32 -0.71 -6.49 16 25 N -0.59 -6.19 10.41 37.02 0.39 -5.80 16 26 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.13 3.28 7.40 -2.40 -0.02 3.26 16 30 H 0.14 3.07 7.18 -2.40 -0.02 3.05 16 31 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 32 H 0.01 0.62 7.42 -2.39 -0.02 0.61 16 33 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.09 2.48 8.07 -2.38 -0.02 2.46 16 35 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 36 H 0.13 1.96 7.22 -2.39 -0.02 1.94 16 37 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.38 2.30 9.21 -210.56 -1.94 0.36 16 39 H 0.39 1.40 8.85 -210.55 -1.86 -0.46 16 Total: -1.00 -81.42 363.64 2.58 -78.84 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -2.68 Total: 0.21 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 7.44 Total: 21.23 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -2.96 Total: -121.14 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.21 Total: 1.33 kcal Total: -81.42 2.58 -78.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022529940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.156 kcal (2) G-P(sol) polarization free energy of solvation -81.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds