Wall clock time and date at job start Fri Apr 10 2020 18:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36607 * 126.00021 * 2 1 4 4 N 1.38904 * 125.99049 * 359.94396 * 3 2 1 5 5 N 1.31025 * 108.02099 * 179.97438 * 3 2 1 6 6 N 1.40105 * 108.00872 * 359.97438 * 5 3 2 7 7 C 1.31085 * 107.98801 * 0.02562 * 6 5 3 8 8 S 1.76193 * 126.00834 * 180.02562 * 7 6 5 9 9 C 1.81394 * 103.00152 * 359.97202 * 8 7 6 10 10 C 1.50708 * 109.47294 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99814 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99824 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99519 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47444 * 89.99677 * 13 12 10 15 15 H 1.07998 * 120.00215 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99980 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99754 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47301 * 0.02562 * 18 16 14 20 20 H 1.48490 * 109.46909 * 120.00537 * 18 16 14 21 21 H 1.48500 * 109.46799 * 240.00151 * 18 16 14 22 22 C 1.46499 * 120.00550 * 359.97438 * 12 10 9 23 23 C 1.53004 * 109.46781 * 90.00317 * 22 12 10 24 24 C 1.47195 * 109.47083 * 180.02562 * 23 22 12 25 25 N 8.41004 * 144.75963 * 162.65271 * 2 1 3 26 26 H 1.08994 * 109.47255 * 270.03359 * 1 2 3 27 27 H 1.09007 * 109.46738 * 30.03423 * 1 2 3 28 28 H 1.08999 * 109.46608 * 150.02839 * 1 2 3 29 29 H 0.97001 * 119.99939 * 180.02562 * 4 3 2 30 30 H 0.96994 * 120.00049 * 0.06012 * 4 3 2 31 31 H 1.08996 * 109.47149 * 299.99954 * 9 8 7 32 32 H 1.08996 * 109.47076 * 60.00099 * 9 8 7 33 33 H 1.09005 * 109.46663 * 209.99881 * 13 12 10 34 34 H 1.08998 * 109.47022 * 329.98797 * 13 12 10 35 35 H 0.97001 * 119.99902 * 179.97438 * 17 16 14 36 36 H 1.08992 * 109.47679 * 210.00511 * 22 12 10 37 37 H 1.09001 * 109.46667 * 330.00792 * 22 12 10 38 38 H 1.08998 * 109.47106 * 300.00101 * 23 22 12 39 39 H 1.08993 * 109.47160 * 60.00115 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2680 1.1052 0.0000 4 7 1.8385 2.4262 -0.0011 5 7 3.5142 0.7007 0.0006 6 7 3.5150 -0.7003 0.0015 7 6 2.2684 -1.1058 0.0010 8 16 1.7242 -2.7816 0.0024 9 6 3.2792 -3.7156 0.0038 10 6 2.9782 -5.1923 0.0045 11 8 1.8279 -5.5767 0.0036 12 7 3.9873 -6.0857 0.0061 13 6 3.6947 -7.5212 0.0062 14 6 3.5961 -8.0139 -1.4145 15 1 3.7369 -7.3265 -2.2355 16 6 3.3262 -9.3424 -1.6663 17 7 3.1542 -10.1794 -0.6666 18 14 3.2047 -9.9533 -3.4274 19 1 3.4371 -8.8220 -4.3609 20 1 4.2285 -11.0036 -3.6586 21 1 1.8523 -10.5200 -3.6625 22 6 5.3768 -5.6214 0.0067 23 6 5.8594 -5.4584 1.4494 24 6 7.2553 -4.9913 1.4500 25 7 8.3338 -4.6319 1.4469 26 1 -0.3633 0.0006 1.0276 27 1 -0.3633 0.8898 -0.5144 28 1 -0.3632 -0.8903 -0.5134 29 1 2.4875 3.1471 -0.0014 30 1 0.8897 2.6277 -0.0011 31 1 3.8555 -3.4631 -0.8862 32 1 3.8549 -3.4614 0.8937 33 1 4.4936 -8.0547 0.5213 34 1 2.7495 -7.6992 0.5191 35 1 2.9639 -11.1139 -0.8437 36 1 6.0038 -6.3507 -0.5060 37 1 5.4396 -4.6626 -0.5080 38 1 5.2324 -4.7290 1.9621 39 1 5.7965 -6.4171 1.9641 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042349816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:47 Heat of formation + Delta-G solvation = 85.107486 kcal Electronic energy + Delta-G solvation = -24094.294528 eV Core-core repulsion = 20393.544088 eV Total energy + Delta-G solvation = -3700.750439 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94098 -39.36130 -36.83077 -35.33400 -35.15467 -34.26663 -32.97350 -30.89443 -30.35199 -29.42378 -27.32266 -26.89791 -24.07113 -23.01866 -22.85429 -21.50459 -18.86494 -17.97382 -17.68129 -17.44317 -16.76100 -16.59239 -16.47017 -16.44292 -15.52366 -15.27048 -15.06563 -14.71236 -14.25290 -13.91437 -13.57315 -13.52276 -13.32922 -13.14069 -12.74516 -12.42699 -12.34157 -12.10872 -11.80435 -11.69648 -11.36832 -11.28543 -11.21104 -10.99272 -10.87854 -10.68275 -10.38600 -10.23255 -10.02485 -9.74529 -9.31237 -9.11806 -8.50776 -7.98112 -7.60412 -6.12468 -4.17161 0.79074 1.80465 2.00677 2.17793 2.47860 2.76065 2.87531 3.07811 3.23926 3.27145 3.35484 3.38998 3.58473 4.14438 4.22512 4.39164 4.73307 4.79429 4.95477 5.00087 5.01435 5.04196 5.10898 5.17189 5.23586 5.37342 5.49750 5.73189 5.81399 6.06676 6.11188 6.80655 6.90348 7.02363 7.25392 7.33706 7.63662 7.83193 8.06617 8.07785 8.11987 8.64640 8.88548 9.48640 10.95775 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003286 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.864714 B = 8517.868438 C =10082.910744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.509 5.509 3 C 0.480 3.520 4 N -0.832 5.832 5 N -0.370 5.370 6 N -0.308 5.308 7 C 0.188 3.812 8 S 0.073 5.927 9 C -0.144 4.144 10 C 0.528 3.472 11 O -0.518 6.518 12 N -0.586 5.586 13 C 0.245 3.755 14 C -0.530 4.530 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.113 3.887 23 C -0.050 4.050 24 C 0.216 3.784 25 N -0.442 5.442 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.424 0.576 30 H 0.407 0.593 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 20.676 3.625 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.216 5.216 3 C 0.115 3.885 4 N -0.390 5.390 5 N -0.210 5.210 6 N -0.142 5.142 7 C -0.194 4.194 8 S 0.298 5.702 9 C -0.296 4.296 10 C 0.312 3.688 11 O -0.395 6.395 12 N -0.318 5.318 13 C 0.127 3.873 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.013 4.013 23 C -0.091 4.091 24 C -0.102 4.102 25 N -0.119 5.119 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.257 0.743 30 H 0.237 0.763 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.436 20.295 3.660 21.094 hybrid contribution -0.731 0.485 -0.967 1.306 sum -5.167 20.780 2.693 21.581 Atomic orbital electron populations 1.22085 0.76080 1.05137 1.04085 1.45874 1.08299 1.03317 1.64101 1.20909 0.87403 0.82995 0.97201 1.40980 1.10730 1.00289 1.87017 1.78101 1.11309 1.01394 1.30191 1.78153 1.13436 1.01053 1.21509 1.26713 0.90776 0.95971 1.05972 1.86085 1.07986 0.83614 1.92465 1.23940 0.99858 0.96978 1.08807 1.19279 0.86077 0.85384 0.78080 1.90739 1.19710 1.79733 1.49299 1.48122 1.03575 1.09125 1.70957 1.19445 0.98215 0.71751 0.97931 1.21442 1.49217 0.94043 0.92196 0.92167 1.24909 0.94918 0.96655 0.97433 1.69923 1.48236 1.04293 1.30696 0.86452 0.77746 0.78754 0.84558 1.19728 1.20981 1.20865 1.21408 0.84621 1.01885 0.93427 1.19860 0.83940 1.04018 1.01295 1.29056 0.94874 0.93043 0.93243 1.81244 1.12560 1.09690 1.08455 0.90105 0.89737 0.88466 0.74292 0.76309 0.86011 0.86240 0.94309 0.93280 0.92663 0.88310 0.90292 0.87570 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.76 59.85 0.64 1.06 16 2 N -0.51 -5.39 3.17 -124.87 -0.40 -5.78 16 3 C 0.48 5.33 9.14 -318.43 -2.91 2.42 16 4 N -0.83 -4.88 9.09 30.37 0.28 -4.60 16 5 N -0.37 -5.58 12.72 30.38 0.39 -5.19 16 6 N -0.31 -4.86 12.29 30.67 0.38 -4.48 16 7 C 0.19 2.52 8.10 -88.37 -0.72 1.80 16 8 S 0.07 0.96 20.61 -107.50 -2.22 -1.25 16 9 C -0.14 -1.95 4.61 36.01 0.17 -1.78 16 10 C 0.53 9.29 7.69 -10.98 -0.08 9.20 16 11 O -0.52 -11.26 15.44 5.56 0.09 -11.17 16 12 N -0.59 -10.30 2.46 -175.06 -0.43 -10.73 16 13 C 0.25 5.58 5.16 -5.19 -0.03 5.55 16 14 C -0.53 -13.76 9.39 -34.44 -0.32 -14.08 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.11 1.49 5.17 -4.04 -0.02 1.47 16 23 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 24 C 0.22 2.75 15.44 -20.74 -0.32 2.43 16 25 N -0.44 -6.88 18.54 42.19 0.78 -6.10 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.26 7.50 -51.93 -0.39 -0.13 16 28 H 0.10 0.59 7.72 -51.93 -0.40 0.19 16 29 H 0.42 1.95 8.95 -40.82 -0.37 1.58 16 30 H 0.41 1.10 8.09 -40.82 -0.33 0.77 16 31 H 0.12 1.55 7.40 -51.93 -0.38 1.17 16 32 H 0.12 1.37 7.18 -51.93 -0.37 1.00 16 33 H 0.04 0.87 8.07 -51.93 -0.42 0.46 16 34 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 37 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 38 H 0.11 0.94 7.22 -51.93 -0.37 0.56 16 39 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -36.48 361.90 -8.40 -44.88 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.57 Total: -1.66 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -3.87 Total: 8.97 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 1.73 Total: -61.10 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.22 Total: -1.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.48 -8.40 -44.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042349816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.988 kcal (2) G-P(sol) polarization free energy of solvation -36.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds