Wall clock time and date at job start Fri Apr 10 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99778 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00562 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99914 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47248 * 180.02562 * 13 11 10 15 15 C 1.34234 * 117.00053 * 180.02562 * 14 13 11 16 16 O 1.20829 * 119.99718 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99751 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.87757 * 59.29830 * 17 15 14 19 19 C 1.54323 * 109.88216 * 298.27747 * 17 15 14 20 20 C 1.55160 * 102.94213 * 218.39483 * 19 17 15 21 21 C 1.54907 * 101.58233 * 35.50211 * 20 19 17 22 22 N 1.47023 * 109.87724 * 180.31421 * 17 15 14 23 23 C 1.34777 * 125.64807 * 298.30644 * 22 17 15 24 24 O 1.21282 * 120.00060 * 0.02562 * 23 22 17 25 25 C 1.50700 * 120.00042 * 180.02562 * 23 22 17 26 26 C 1.53001 * 117.49883 * 248.62282 * 25 23 22 27 27 C 1.53003 * 117.49617 * 180.02562 * 25 23 22 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 0.97000 * 119.99666 * 359.97438 * 10 9 7 32 32 H 1.09005 * 109.46877 * 299.99952 * 13 11 10 33 33 H 1.09002 * 109.46993 * 59.99605 * 13 11 10 34 34 H 1.09004 * 110.72073 * 336.75245 * 19 17 15 35 35 H 1.08997 * 110.72045 * 99.85606 * 19 17 15 36 36 H 1.08997 * 111.00686 * 153.57456 * 20 19 17 37 37 H 1.09004 * 111.00296 * 277.42983 * 20 19 17 38 38 H 1.08994 * 110.36885 * 81.83140 * 21 20 19 39 39 H 1.09009 * 110.36742 * 204.15539 * 21 20 19 40 40 H 1.08997 * 115.55229 * 34.33328 * 25 23 22 41 41 H 1.08994 * 117.49765 * 359.97438 * 26 25 23 42 42 H 1.09002 * 117.49798 * 145.02403 * 26 25 23 43 43 H 1.09007 * 117.49619 * 214.97582 * 27 25 23 44 44 H 1.08995 * 117.50440 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 5.3249 -2.8216 -0.0016 12 8 6.1131 -1.8998 -0.0012 13 6 5.8273 -4.2425 -0.0024 14 8 7.2792 -4.2425 -0.0020 15 6 7.8886 -5.4385 -0.0031 16 8 7.2305 -6.4518 -0.0040 17 6 9.3935 -5.5173 -0.0033 18 1 9.7911 -5.0149 0.8785 19 6 9.9535 -4.8570 -1.2808 20 6 11.1393 -5.7832 -1.6596 21 6 10.5928 -7.1727 -1.2470 22 7 9.8205 -6.9242 -0.0122 23 6 9.5514 -7.8328 0.9462 24 8 8.9042 -7.5127 1.9207 25 6 10.0546 -9.2464 0.8069 26 6 9.0168 -10.3459 0.5724 27 6 9.7155 -10.2306 1.9282 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.3695 -3.3126 -0.0020 32 1 5.4640 -4.7568 0.8874 33 1 5.4638 -4.7558 -0.8926 34 1 9.2030 -4.8487 -2.0714 35 1 10.3021 -3.8458 -1.0712 36 1 11.3391 -5.7442 -2.7304 37 1 12.0318 -5.5288 -1.0877 38 1 9.9450 -7.5724 -2.0270 39 1 11.4152 -7.8596 -1.0466 40 1 11.0225 -9.3548 0.3175 41 1 7.9701 -10.0468 0.5193 42 1 9.3018 -11.1779 -0.0716 43 1 10.4603 -10.9868 2.1764 44 1 9.1280 -9.8559 2.7663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047847883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:49 Heat of formation + Delta-G solvation = -120.421203 kcal Electronic energy + Delta-G solvation = -27190.556308 eV Core-core repulsion = 23109.388197 eV Total energy + Delta-G solvation = -4081.168111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24457 -39.98844 -38.86223 -38.00838 -36.36744 -36.16703 -34.36982 -32.43420 -32.14907 -30.66605 -29.26004 -27.10041 -25.65213 -23.81867 -22.77928 -22.36669 -22.00649 -20.97134 -20.11930 -19.30055 -18.14121 -18.02225 -17.46928 -16.77282 -16.51520 -16.40493 -15.85916 -15.35201 -15.14676 -14.89563 -14.69193 -14.51928 -14.05521 -13.87646 -13.68829 -13.34463 -13.13825 -12.99749 -12.64665 -12.44072 -12.38375 -12.15128 -11.98672 -11.90364 -11.80712 -11.41066 -11.07054 -10.96756 -10.88355 -10.82601 -10.71361 -10.59140 -10.14362 -10.00263 -9.54469 -9.36242 -9.14424 -8.81776 -8.26748 -6.24096 -4.27103 1.95738 2.09126 2.31139 2.67845 3.03470 3.25456 3.32118 3.39815 3.50884 3.79785 3.88813 4.01474 4.30411 4.30925 4.38242 4.43475 4.52331 4.63002 4.69631 4.71575 4.91597 5.07391 5.10283 5.10717 5.18767 5.24427 5.24845 5.26305 5.31379 5.35801 5.45418 5.59574 5.64109 5.75618 5.80089 6.29030 6.73135 7.00874 7.05126 7.09739 7.31737 7.62178 7.87881 8.05144 8.41506 8.68176 8.80017 9.34893 10.87687 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.002299 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.739704 B =12174.756251 C =12985.732568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.260 1.260 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.503 3.497 12 O -0.537 6.537 13 C 0.050 3.950 14 O -0.328 6.328 15 C 0.452 3.548 16 O -0.492 6.492 17 C 0.149 3.851 18 H 0.117 0.883 19 C -0.119 4.119 20 C -0.133 4.133 21 C 0.100 3.900 22 N -0.605 5.605 23 C 0.566 3.434 24 O -0.523 6.523 25 C -0.190 4.190 26 C -0.149 4.149 27 C -0.148 4.148 28 H 0.268 0.732 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.399 0.601 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.759 -19.536 -3.902 32.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.414 6.414 13 C -0.027 4.027 14 O -0.243 6.243 15 C 0.292 3.708 16 O -0.378 6.378 17 C 0.044 3.956 18 H 0.134 0.866 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.022 4.022 22 N -0.341 5.341 23 C 0.355 3.645 24 O -0.397 6.397 25 C -0.211 4.211 26 C -0.187 4.187 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.233 0.767 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 25.522 -18.916 -3.295 31.938 hybrid contribution -0.261 0.438 -0.048 0.512 sum 25.261 -18.477 -3.344 31.476 Atomic orbital electron populations 1.69879 1.06213 1.27498 1.49175 1.24797 0.94813 0.99200 0.93803 0.86809 0.80551 0.83171 0.79117 1.19779 1.18471 1.20840 1.21069 0.88340 0.95344 1.53622 0.90131 1.19555 0.95361 0.77954 0.97057 1.46069 1.04870 1.11543 1.72515 1.19909 0.83696 0.89387 0.78362 1.90691 1.55322 1.45657 1.49748 1.22810 0.77894 0.97267 1.04764 1.86529 1.21773 1.32352 1.83621 1.23963 0.92123 0.81725 0.73017 1.90668 1.66504 1.36411 1.44205 1.21073 0.87401 0.84337 1.02816 0.86558 1.22640 0.98195 1.00171 0.94689 1.22845 0.97984 0.93370 1.02845 1.22479 0.95252 0.98286 0.86207 1.48314 1.54544 1.09131 1.22090 1.19341 0.78687 0.85286 0.81146 1.90736 1.38750 1.79727 1.30514 1.22104 1.01786 0.88959 1.08293 1.22955 0.97822 0.98006 0.99871 1.22976 1.03150 0.99493 0.92896 0.92188 0.95423 0.95873 0.76706 0.88370 0.88461 0.89621 0.87843 0.88882 0.89789 0.90764 0.89757 0.85874 0.87934 0.87704 0.87802 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.55 -14.93 9.83 -34.44 -0.34 -15.27 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.45 4.50 -5.19 -0.02 5.43 16 10 N -0.70 -14.21 5.55 -61.47 -0.34 -14.55 16 11 C 0.50 9.85 7.91 -10.98 -0.09 9.76 16 12 O -0.54 -12.47 16.50 -14.10 -0.23 -12.70 16 13 C 0.05 0.79 5.94 36.01 0.21 1.00 16 14 O -0.33 -5.24 9.72 -45.91 -0.45 -5.69 16 15 C 0.45 6.59 6.77 36.00 0.24 6.83 16 16 O -0.49 -8.31 14.80 -23.96 -0.35 -8.66 16 17 C 0.15 1.60 3.36 -68.11 -0.23 1.37 16 18 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.12 -0.85 6.44 -24.90 -0.16 -1.01 16 20 C -0.13 -0.56 7.08 -24.58 -0.17 -0.74 16 21 C 0.10 0.56 6.71 -2.35 -0.02 0.54 16 22 N -0.60 -6.00 2.85 -164.07 -0.47 -6.47 16 23 C 0.57 6.82 6.80 -10.99 -0.07 6.74 16 24 O -0.52 -8.59 15.54 -8.50 -0.13 -8.72 16 25 C -0.19 -1.55 5.54 -91.77 -0.51 -2.06 16 26 C -0.15 -1.12 10.23 -26.75 -0.27 -1.40 16 27 C -0.15 -1.14 10.04 -26.75 -0.27 -1.41 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 30 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 31 H 0.40 7.06 8.32 -40.82 -0.34 6.72 16 32 H 0.10 1.43 8.13 -51.93 -0.42 1.01 16 33 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 34 H 0.09 0.66 7.84 -51.93 -0.41 0.25 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.28 7.02 -51.92 -0.36 -0.08 16 40 H 0.12 0.64 7.08 -51.93 -0.37 0.27 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.11 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -37.40 374.04 -8.48 -45.88 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.45 Total: 2.34 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -1.79 Total: 11.90 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.03 Total: -46.64 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.17 Total: -35.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.40 -8.48 -45.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047847883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.543 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds