Wall clock time and date at job start Fri Apr 10 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99778 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00562 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99914 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47248 * 180.02562 * 13 11 10 15 15 C 1.34234 * 117.00053 * 180.02562 * 14 13 11 16 16 O 1.20829 * 119.99718 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99751 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.87757 * 59.29830 * 17 15 14 19 19 C 1.54323 * 109.88216 * 298.27747 * 17 15 14 20 20 C 1.55160 * 102.94213 * 218.39483 * 19 17 15 21 21 C 1.54907 * 101.58233 * 35.50211 * 20 19 17 22 22 N 1.47023 * 109.87724 * 180.31421 * 17 15 14 23 23 C 1.34777 * 125.64807 * 298.30644 * 22 17 15 24 24 O 1.21282 * 120.00060 * 0.02562 * 23 22 17 25 25 C 1.50700 * 120.00042 * 180.02562 * 23 22 17 26 26 C 1.53001 * 117.49883 * 248.62282 * 25 23 22 27 27 C 1.53003 * 117.49617 * 180.02562 * 25 23 22 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 0.97000 * 119.99666 * 359.97438 * 10 9 7 32 32 H 1.09005 * 109.46877 * 299.99952 * 13 11 10 33 33 H 1.09002 * 109.46993 * 59.99605 * 13 11 10 34 34 H 1.09004 * 110.72073 * 336.75245 * 19 17 15 35 35 H 1.08997 * 110.72045 * 99.85606 * 19 17 15 36 36 H 1.08997 * 111.00686 * 153.57456 * 20 19 17 37 37 H 1.09004 * 111.00296 * 277.42983 * 20 19 17 38 38 H 1.08994 * 110.36885 * 81.83140 * 21 20 19 39 39 H 1.09009 * 110.36742 * 204.15539 * 21 20 19 40 40 H 1.08997 * 115.55229 * 34.33328 * 25 23 22 41 41 H 1.08994 * 117.49765 * 359.97438 * 26 25 23 42 42 H 1.09002 * 117.49798 * 145.02403 * 26 25 23 43 43 H 1.09007 * 117.49619 * 214.97582 * 27 25 23 44 44 H 1.08995 * 117.50440 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 5.3249 -2.8216 -0.0016 12 8 6.1131 -1.8998 -0.0012 13 6 5.8273 -4.2425 -0.0024 14 8 7.2792 -4.2425 -0.0020 15 6 7.8886 -5.4385 -0.0031 16 8 7.2305 -6.4518 -0.0040 17 6 9.3935 -5.5173 -0.0033 18 1 9.7911 -5.0149 0.8785 19 6 9.9535 -4.8570 -1.2808 20 6 11.1393 -5.7832 -1.6596 21 6 10.5928 -7.1727 -1.2470 22 7 9.8205 -6.9242 -0.0122 23 6 9.5514 -7.8328 0.9462 24 8 8.9042 -7.5127 1.9207 25 6 10.0546 -9.2464 0.8069 26 6 9.0168 -10.3459 0.5724 27 6 9.7155 -10.2306 1.9282 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.3695 -3.3126 -0.0020 32 1 5.4640 -4.7568 0.8874 33 1 5.4638 -4.7558 -0.8926 34 1 9.2030 -4.8487 -2.0714 35 1 10.3021 -3.8458 -1.0712 36 1 11.3391 -5.7442 -2.7304 37 1 12.0318 -5.5288 -1.0877 38 1 9.9450 -7.5724 -2.0270 39 1 11.4152 -7.8596 -1.0466 40 1 11.0225 -9.3548 0.3175 41 1 7.9701 -10.0468 0.5193 42 1 9.3018 -11.1779 -0.0716 43 1 10.4603 -10.9868 2.1764 44 1 9.1280 -9.8559 2.7663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047847883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:48 Heat of formation + Delta-G solvation = -146.040837 kcal Electronic energy + Delta-G solvation = -27191.667259 eV Core-core repulsion = 23109.388197 eV Total energy + Delta-G solvation = -4082.279062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.24334 -41.08557 -40.35548 -38.78305 -37.55043 -36.97813 -36.24444 -34.49542 -32.84897 -31.62762 -30.69667 -28.75802 -26.33687 -24.80542 -23.95568 -23.35498 -22.83412 -21.87524 -21.76445 -20.15743 -19.36166 -19.12720 -18.71996 -18.17873 -17.82071 -17.45268 -17.07387 -16.90109 -16.36278 -16.15603 -15.80883 -15.53372 -15.27647 -14.87458 -14.76709 -14.41837 -14.37754 -14.25679 -13.98933 -13.80522 -13.62599 -13.17345 -13.11055 -12.89837 -12.72511 -12.48779 -12.22554 -12.01264 -11.94716 -11.94153 -11.70338 -11.60515 -11.52364 -11.47641 -11.05987 -11.01221 -10.94496 -10.09228 -9.94935 -8.41974 -6.50081 0.91296 0.97817 1.32726 1.34926 1.43673 1.47483 1.48317 1.78478 2.26744 2.41167 2.89058 2.93136 3.26624 3.37476 3.57491 3.65083 3.69440 3.81749 3.90740 3.93020 3.94488 3.98989 4.09217 4.19553 4.44481 4.66839 4.70734 4.70960 4.76056 4.80617 4.89874 4.97292 5.00827 5.04384 5.09725 5.17525 5.19938 5.20908 5.27804 5.34750 6.02640 6.29609 6.46737 6.50349 6.66400 7.02858 7.06755 7.21890 8.72652 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.002299 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.739704 B =12174.756251 C =12985.732568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.233 3.767 10 N -0.697 5.697 11 C 0.508 3.492 12 O -0.573 6.573 13 C 0.058 3.942 14 O -0.341 6.341 15 C 0.449 3.551 16 O -0.520 6.520 17 C 0.143 3.857 18 H 0.115 0.885 19 C -0.116 4.116 20 C -0.118 4.118 21 C 0.092 3.908 22 N -0.604 5.604 23 C 0.551 3.449 24 O -0.582 6.582 25 C -0.189 4.189 26 C -0.144 4.144 27 C -0.151 4.151 28 H 0.273 0.727 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.412 0.588 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.163 0.837 41 H 0.072 0.928 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.893 -20.462 -5.359 35.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.348 5.348 11 C 0.294 3.706 12 O -0.453 6.453 13 C -0.019 4.019 14 O -0.255 6.255 15 C 0.291 3.709 16 O -0.408 6.408 17 C 0.037 3.963 18 H 0.132 0.868 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.029 4.029 22 N -0.338 5.338 23 C 0.343 3.657 24 O -0.462 6.462 25 C -0.209 4.209 26 C -0.182 4.182 27 C -0.189 4.189 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.248 0.752 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.180 0.820 41 H 0.090 0.910 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 28.679 -19.873 -4.793 35.220 hybrid contribution -1.273 0.659 0.410 1.491 sum 27.406 -19.214 -4.384 33.756 Atomic orbital electron populations 1.69984 1.07751 1.28721 1.50423 1.25628 0.95586 1.02809 0.93471 0.85830 0.79335 0.79088 0.79494 1.19042 1.18108 1.19732 1.21262 0.89792 0.94707 1.53028 0.92238 1.19196 0.93471 0.80098 0.96272 1.45877 1.05771 1.10496 1.72698 1.20415 0.82802 0.90659 0.76747 1.90669 1.56088 1.47258 1.51261 1.22682 0.78409 0.94322 1.06482 1.86536 1.21640 1.33509 1.83861 1.24863 0.93592 0.80733 0.71707 1.90650 1.67400 1.37055 1.45654 1.21370 0.84600 0.85648 1.04714 0.86758 1.22708 0.99148 1.01068 0.92499 1.22883 0.96882 0.91222 1.04580 1.22845 0.95734 0.99937 0.84350 1.48540 1.53939 1.08453 1.22905 1.20169 0.77941 0.86967 0.80649 1.90699 1.41517 1.80968 1.32992 1.22253 1.03326 0.86467 1.08875 1.22995 0.96173 0.98627 1.00375 1.23027 1.03670 1.00132 0.92032 0.91765 0.96152 0.96598 0.75208 0.87250 0.86024 0.90285 0.86927 0.86386 0.88362 0.90499 0.86665 0.81959 0.90975 0.84316 0.84634 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 2 C 0.03 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.94 43.85 27.47 68.60 1.88 45.73 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.26 -11.77 6.54 99.48 0.65 -11.12 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -30.41 9.83 25.60 0.25 -30.16 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 9 C 0.23 11.40 4.50 85.63 0.38 11.79 16 10 N -0.70 -28.23 5.55 -466.77 -2.59 -30.81 16 11 C 0.51 19.76 7.91 87.66 0.69 20.45 16 12 O -0.57 -26.61 16.50 15.76 0.26 -26.35 16 13 C 0.06 1.80 5.94 71.24 0.42 2.22 16 14 O -0.34 -10.87 9.72 -45.10 -0.44 -11.31 16 15 C 0.45 13.19 6.77 71.24 0.48 13.67 16 16 O -0.52 -17.88 14.80 26.94 0.40 -17.48 16 17 C 0.14 2.97 3.36 44.59 0.15 3.12 16 18 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 19 C -0.12 -1.43 6.44 31.78 0.20 -1.23 16 20 C -0.12 -0.57 7.08 31.99 0.23 -0.34 16 21 C 0.09 0.72 6.71 86.79 0.58 1.31 16 22 N -0.60 -11.23 2.85 -791.37 -2.25 -13.49 16 23 C 0.55 13.16 6.80 87.66 0.60 13.76 16 24 O -0.58 -20.11 15.54 10.40 0.16 -19.95 16 25 C -0.19 -2.71 5.54 -11.54 -0.06 -2.77 16 26 C -0.14 -1.97 10.23 30.58 0.31 -1.66 16 27 C -0.15 -2.18 10.04 30.58 0.31 -1.87 16 28 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 30 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 31 H 0.41 14.53 8.32 -92.71 -0.77 13.76 16 32 H 0.11 3.17 8.13 -2.38 -0.02 3.15 16 33 H 0.12 3.18 8.13 -2.39 -0.02 3.16 16 34 H 0.08 1.09 7.84 -2.38 -0.02 1.08 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.12 0.23 7.02 -2.38 -0.02 0.21 16 40 H 0.16 0.98 7.08 -2.39 -0.02 0.96 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.08 1.61 7.67 -2.39 -0.02 1.59 16 Total: -1.00 -84.34 374.04 2.94 -81.40 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.20 Total: 17.45 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 5.02 Total: 30.19 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.55 Total: -99.69 kcal Atomic # 8 Polarization: -75.47 SS G_CDS: 0.38 Total: -75.09 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -84.34 2.94 -81.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047847883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.637 kcal (2) G-P(sol) polarization free energy of solvation -84.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds