Wall clock time and date at job start Fri Apr 10 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47125 * 300.00421 * 3 2 1 6 6 H 1.48500 * 109.46730 * 60.00125 * 3 2 1 7 7 C 1.37875 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99830 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99875 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00203 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00178 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.47292 * 180.02562 * 13 11 10 15 15 C 1.46956 * 110.99677 * 170.00200 * 14 13 11 16 16 C 1.53057 * 109.36162 * 183.18894 * 15 14 13 17 17 N 1.46954 * 109.36263 * 301.59585 * 16 15 14 18 18 C 1.46908 * 110.99966 * 183.18687 * 17 16 15 19 19 C 1.50697 * 109.46615 * 46.20263 * 18 17 16 20 20 C 1.33640 * 122.75048 * 94.73722 * 19 18 17 21 21 S 1.76192 * 107.92723 * 179.97438 * 20 19 18 22 22 C 1.70974 * 90.28166 * 0.27089 * 21 20 19 23 23 N 1.29022 * 110.17054 * 359.84491 * 22 21 20 24 24 C 1.46956 * 110.88042 * 59.32532 * 17 16 15 25 25 C 1.46954 * 110.99900 * 293.79852 * 14 13 11 26 26 H 0.96997 * 119.99935 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46769 * 60.00774 * 9 7 2 28 28 H 1.08989 * 109.47164 * 300.00791 * 9 7 2 29 29 H 0.96996 * 119.99903 * 0.02562 * 10 9 7 30 30 H 1.09003 * 109.46825 * 60.00356 * 13 11 10 31 31 H 1.09002 * 109.47091 * 300.00396 * 13 11 10 32 32 H 1.09002 * 109.48908 * 303.15220 * 15 14 13 33 33 H 1.09002 * 109.49369 * 63.22349 * 15 14 13 34 34 H 1.08997 * 109.48880 * 61.56749 * 16 15 14 35 35 H 1.09004 * 109.48844 * 181.62946 * 16 15 14 36 36 H 1.08997 * 109.47258 * 166.20113 * 18 17 16 37 37 H 1.09001 * 109.46957 * 286.20350 * 18 17 16 38 38 H 1.08008 * 126.03584 * 0.03148 * 20 19 18 39 39 H 1.08006 * 124.91704 * 179.83905 * 22 21 20 40 40 H 1.09002 * 109.48908 * 180.71202 * 24 17 16 41 41 H 1.09002 * 109.49369 * 60.64073 * 24 17 16 42 42 H 1.08997 * 109.49355 * 296.78047 * 25 14 13 43 43 H 1.09003 * 109.49032 * 56.82589 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0005 14 7 1.9987 -7.3009 -0.0018 15 6 2.9058 -8.4324 -0.2395 16 6 2.0933 -9.7275 -0.3126 17 7 1.3492 -9.9073 0.9418 18 6 0.6146 -11.1795 0.9404 19 6 1.5203 -12.2818 0.4550 20 6 2.2164 -13.0639 1.2854 21 16 3.1346 -14.2087 0.3103 22 6 2.4973 -13.5168 -1.1173 23 7 1.6956 -12.5495 -0.8234 24 6 0.4420 -8.7758 1.1794 25 6 1.2545 -7.4807 1.2526 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8895 29 1 3.1567 -3.4354 -0.0002 30 1 3.3591 -5.9712 0.8901 31 1 3.3605 -5.9709 -0.8899 32 1 3.4359 -8.2822 -1.1800 33 1 3.6248 -8.4999 0.5769 34 1 1.3931 -9.6709 -1.1460 35 1 2.7670 -10.5716 -0.4600 36 1 0.2773 -11.4054 1.9519 37 1 -0.2481 -11.1002 0.2789 38 1 2.2156 -13.0052 2.3639 39 1 2.7319 -13.8422 -2.1201 40 1 -0.0881 -8.9261 2.1199 41 1 -0.2770 -8.7083 0.3630 42 1 1.9548 -7.5373 2.0859 43 1 0.5811 -6.6364 1.4001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049442088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:59 Heat of formation + Delta-G solvation = 33.989350 kcal Electronic energy + Delta-G solvation = -24592.049895 eV Core-core repulsion = 20992.623150 eV Total energy + Delta-G solvation = -3599.426745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55325 -39.41167 -38.13387 -35.32649 -34.07481 -32.32077 -31.54167 -30.86644 -29.20512 -27.44881 -26.17555 -25.16221 -23.52511 -23.36263 -22.16012 -19.98937 -19.64547 -19.60104 -18.39309 -17.10360 -16.57079 -16.14023 -15.71428 -15.34205 -15.21168 -14.96240 -14.87025 -14.60083 -14.28431 -14.18866 -13.72739 -13.58848 -13.52244 -13.25971 -12.61493 -12.43165 -12.18007 -11.98461 -11.79215 -11.65727 -11.38504 -11.19316 -10.95976 -10.94121 -10.83160 -10.73378 -10.29806 -10.03226 -9.81575 -9.36392 -9.29975 -8.97186 -8.72200 -8.46478 -8.14102 -7.82424 -6.15704 -4.22399 0.35990 1.02222 1.35541 2.36439 3.23933 3.30930 3.34004 3.42395 3.71908 3.75039 3.97066 4.28035 4.45950 4.60359 4.78299 4.87654 4.95335 5.13544 5.16780 5.20408 5.28501 5.38451 5.42674 5.44160 5.52411 5.56423 5.61658 5.65062 5.72605 5.86023 5.92512 6.09199 6.19771 6.77965 6.86250 7.07472 7.19846 7.35233 7.35364 7.48424 7.54393 7.69779 7.98739 8.66694 8.81167 9.15988 9.44517 10.94524 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.001911 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.162433 B =14650.070380 C =14927.823662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.539 6.539 13 C 0.036 3.964 14 N -0.520 5.520 15 C 0.057 3.943 16 C 0.066 3.934 17 N -0.536 5.536 18 C 0.128 3.872 19 C 0.067 3.933 20 C -0.234 4.234 21 S 0.110 5.890 22 C 0.021 3.979 23 N -0.463 5.463 24 C 0.061 3.939 25 C 0.054 3.946 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.389 0.611 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.179 0.821 39 H 0.199 0.801 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.998 -29.182 2.065 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.365 5.365 11 C 0.283 3.717 12 O -0.417 6.417 13 C -0.095 4.095 14 N -0.245 5.245 15 C -0.071 4.071 16 C -0.062 4.062 17 N -0.262 5.262 18 C -0.002 4.002 19 C -0.065 4.065 20 C -0.374 4.374 21 S 0.362 5.638 22 C -0.277 4.277 23 N -0.177 5.177 24 C -0.067 4.067 25 C -0.073 4.073 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.196 0.804 39 H 0.216 0.784 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.381 -29.716 1.808 30.672 hybrid contribution 0.476 1.638 0.179 1.715 sum 7.857 -28.078 1.987 29.224 Atomic orbital electron populations 1.69986 1.06092 1.27159 1.49032 1.24962 0.94921 0.99465 0.94756 0.86364 0.79823 0.82995 0.77735 1.19651 1.20807 1.20818 1.21277 0.93298 0.90493 1.53001 0.91870 1.19079 0.88285 0.81921 0.97673 1.46455 1.11055 1.06116 1.72834 1.20295 0.89561 0.84059 0.77763 1.90618 1.16685 1.84522 1.49904 1.21996 0.95447 0.89558 1.02525 1.61789 1.26442 1.00410 1.35865 1.22198 0.94053 0.90052 1.00787 1.22110 0.97176 0.96453 0.90507 1.62413 1.27321 1.01268 1.35155 1.20637 0.92882 0.85851 1.00868 1.20190 1.00405 0.98926 0.86944 1.26879 1.04064 1.01265 1.05190 1.84094 1.44880 1.34668 1.00134 1.28407 0.98779 0.96705 1.03825 1.66225 1.16767 1.15607 1.19102 1.22165 0.94082 0.89153 1.01293 1.22336 0.97596 0.98181 0.89226 0.92520 0.95554 0.95636 0.77842 0.92433 0.88425 0.90437 0.94369 0.93392 0.90677 0.89004 0.92721 0.80368 0.78400 0.90239 0.93322 0.94767 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.67 16 10 N -0.72 -15.11 5.55 -61.47 -0.34 -15.45 16 11 C 0.50 10.02 7.53 -10.99 -0.08 9.93 16 12 O -0.54 -12.93 14.34 5.56 0.08 -12.85 16 13 C 0.04 0.54 5.45 -4.98 -0.03 0.51 16 14 N -0.52 -7.82 4.45 -235.90 -1.05 -8.87 16 15 C 0.06 0.71 5.61 -3.76 -0.02 0.69 16 16 C 0.07 0.80 4.88 -3.77 -0.02 0.78 16 17 N -0.54 -6.19 4.85 -235.90 -1.14 -7.33 16 18 C 0.13 1.25 5.73 -4.97 -0.03 1.22 16 19 C 0.07 0.63 4.81 -84.22 -0.40 0.23 16 20 C -0.23 -1.78 11.11 29.12 0.32 -1.45 16 21 S 0.11 0.67 23.22 -107.50 -2.50 -1.83 16 22 C 0.02 0.15 12.23 51.58 0.63 0.78 16 23 N -0.46 -4.64 9.13 -11.90 -0.11 -4.74 16 24 C 0.06 0.77 5.58 -3.76 -0.02 0.75 16 25 C 0.05 0.80 5.26 -3.77 -0.02 0.78 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.75 8.14 -51.94 -0.42 0.33 16 29 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 30 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.10 1.26 8.03 -51.93 -0.42 0.84 16 32 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.89 5.97 -51.93 -0.31 0.58 16 36 H 0.09 0.73 8.10 -51.93 -0.42 0.30 16 37 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.18 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.85 5.85 -51.93 -0.30 1.55 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -33.41 363.57 -10.37 -43.78 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.39 Total: 3.95 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.11 Total: 7.43 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -1.91 Total: -61.88 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.41 -10.37 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049442088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.773 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds