Wall clock time and date at job start Fri Apr 10 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00108 * 2 1 4 4 H 1.48500 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47125 * 300.00421 * 3 2 1 6 6 H 1.48500 * 109.46730 * 60.00125 * 3 2 1 7 7 C 1.37875 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99830 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99875 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00203 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00178 * 180.02562 * 11 10 9 14 14 N 1.46899 * 109.47292 * 180.02562 * 13 11 10 15 15 C 1.46956 * 110.99677 * 170.00200 * 14 13 11 16 16 C 1.53057 * 109.36162 * 183.18894 * 15 14 13 17 17 N 1.46954 * 109.36263 * 301.59585 * 16 15 14 18 18 C 1.46908 * 110.99966 * 183.18687 * 17 16 15 19 19 C 1.50697 * 109.46615 * 46.20263 * 18 17 16 20 20 C 1.33640 * 122.75048 * 94.73722 * 19 18 17 21 21 S 1.76192 * 107.92723 * 179.97438 * 20 19 18 22 22 C 1.70974 * 90.28166 * 0.27089 * 21 20 19 23 23 N 1.29022 * 110.17054 * 359.84491 * 22 21 20 24 24 C 1.46956 * 110.88042 * 59.32532 * 17 16 15 25 25 C 1.46954 * 110.99900 * 293.79852 * 14 13 11 26 26 H 0.96997 * 119.99935 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46769 * 60.00774 * 9 7 2 28 28 H 1.08989 * 109.47164 * 300.00791 * 9 7 2 29 29 H 0.96996 * 119.99903 * 0.02562 * 10 9 7 30 30 H 1.09003 * 109.46825 * 60.00356 * 13 11 10 31 31 H 1.09002 * 109.47091 * 300.00396 * 13 11 10 32 32 H 1.09002 * 109.48908 * 303.15220 * 15 14 13 33 33 H 1.09002 * 109.49369 * 63.22349 * 15 14 13 34 34 H 1.08997 * 109.48880 * 61.56749 * 16 15 14 35 35 H 1.09004 * 109.48844 * 181.62946 * 16 15 14 36 36 H 1.08997 * 109.47258 * 166.20113 * 18 17 16 37 37 H 1.09001 * 109.46957 * 286.20350 * 18 17 16 38 38 H 1.08008 * 126.03584 * 0.03148 * 20 19 18 39 39 H 1.08006 * 124.91704 * 179.83905 * 22 21 20 40 40 H 1.09002 * 109.48908 * 180.71202 * 24 17 16 41 41 H 1.09002 * 109.49369 * 60.64073 * 24 17 16 42 42 H 1.08997 * 109.49355 * 296.78047 * 25 14 13 43 43 H 1.09003 * 109.49032 * 56.82589 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0005 14 7 1.9987 -7.3009 -0.0018 15 6 2.9058 -8.4324 -0.2395 16 6 2.0933 -9.7275 -0.3126 17 7 1.3492 -9.9073 0.9418 18 6 0.6146 -11.1795 0.9404 19 6 1.5203 -12.2818 0.4550 20 6 2.2164 -13.0639 1.2854 21 16 3.1346 -14.2087 0.3103 22 6 2.4973 -13.5168 -1.1173 23 7 1.6956 -12.5495 -0.8234 24 6 0.4420 -8.7758 1.1794 25 6 1.2545 -7.4807 1.2526 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5570 0.8895 29 1 3.1567 -3.4354 -0.0002 30 1 3.3591 -5.9712 0.8901 31 1 3.3605 -5.9709 -0.8899 32 1 3.4359 -8.2822 -1.1800 33 1 3.6248 -8.4999 0.5769 34 1 1.3931 -9.6709 -1.1460 35 1 2.7670 -10.5716 -0.4600 36 1 0.2773 -11.4054 1.9519 37 1 -0.2481 -11.1002 0.2789 38 1 2.2156 -13.0052 2.3639 39 1 2.7319 -13.8422 -2.1201 40 1 -0.0881 -8.9261 2.1199 41 1 -0.2770 -8.7083 0.3630 42 1 1.9548 -7.5373 2.0859 43 1 0.5811 -6.6364 1.4001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049442088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:58 Heat of formation + Delta-G solvation = 6.811761 kcal Electronic energy + Delta-G solvation = -24593.228404 eV Core-core repulsion = 20992.623150 eV Total energy + Delta-G solvation = -3600.605253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31234 -40.70892 -39.40063 -36.48558 -35.93845 -34.33915 -32.33197 -31.89355 -30.45081 -29.03369 -27.22600 -26.09072 -24.69721 -24.52017 -23.78163 -21.36252 -20.86280 -20.39382 -18.96908 -18.92832 -17.62998 -17.50702 -16.94016 -16.74923 -16.57491 -16.16602 -15.83580 -15.83111 -15.58437 -15.39413 -15.03875 -14.57344 -14.25740 -14.22377 -14.07187 -13.96903 -13.85139 -13.22879 -12.92712 -12.86516 -12.80903 -12.70866 -12.28026 -12.26196 -12.21292 -11.90359 -11.82227 -11.45005 -10.81079 -10.64385 -10.57526 -10.36554 -9.87616 -9.79747 -9.42334 -9.24322 -8.29078 -6.45587 -0.17450 0.52579 0.82042 1.43060 1.44300 1.57791 1.73082 1.81080 2.26880 2.45865 2.96200 3.04763 3.05785 3.31926 3.83028 3.93141 3.96135 4.15727 4.19147 4.21922 4.32791 4.37122 4.44105 4.48156 4.50366 4.56450 4.64287 4.76539 4.84078 4.88992 5.01004 5.05693 5.12453 5.15728 5.25451 5.50194 5.70504 5.81177 5.86266 5.88273 6.03630 6.13419 6.66178 6.79993 6.96581 7.24104 7.54820 8.83315 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.001911 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.162433 B =14650.070380 C =14927.823662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.710 5.710 11 C 0.495 3.505 12 O -0.584 6.584 13 C 0.051 3.949 14 N -0.543 5.543 15 C 0.062 3.938 16 C 0.074 3.926 17 N -0.531 5.531 18 C 0.128 3.872 19 C 0.044 3.956 20 C -0.238 4.238 21 S 0.160 5.840 22 C 0.014 3.986 23 N -0.501 5.501 24 C 0.067 3.933 25 C 0.059 3.941 26 H 0.268 0.732 27 H -0.015 1.015 28 H -0.014 1.014 29 H 0.408 0.592 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.038 0.962 38 H 0.195 0.805 39 H 0.223 0.777 40 H 0.097 0.903 41 H 0.024 0.976 42 H 0.045 0.955 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.338 -30.384 2.514 32.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.361 5.361 11 C 0.282 3.718 12 O -0.465 6.465 13 C -0.080 4.080 14 N -0.269 5.269 15 C -0.066 4.066 16 C -0.054 4.054 17 N -0.256 5.256 18 C -0.001 4.001 19 C -0.087 4.087 20 C -0.378 4.378 21 S 0.412 5.588 22 C -0.284 4.284 23 N -0.216 5.216 24 C -0.061 4.061 25 C -0.069 4.069 26 H 0.077 0.923 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.244 0.756 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.056 0.944 38 H 0.212 0.788 39 H 0.239 0.761 40 H 0.115 0.885 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.778 -30.967 2.256 32.867 hybrid contribution -0.592 1.853 0.033 1.946 sum 10.185 -29.114 2.289 30.929 Atomic orbital electron populations 1.70150 1.08289 1.28465 1.50104 1.26094 0.95800 1.03987 0.93930 0.85097 0.79110 0.77270 0.77639 1.17554 1.20533 1.20455 1.21668 0.94346 0.90582 1.52644 0.89740 1.18495 0.88668 0.84347 0.93903 1.46183 1.11154 1.05483 1.73252 1.21317 0.89971 0.84720 0.75801 1.90608 1.19240 1.85173 1.51448 1.21921 0.93867 0.87065 1.05156 1.61733 1.27688 1.01287 1.36176 1.22244 0.93654 0.88743 1.01918 1.22011 0.96771 0.96736 0.89905 1.62448 1.27049 1.01506 1.34621 1.20671 0.92463 0.85352 1.01649 1.20120 1.01551 0.99661 0.87364 1.27147 1.03486 1.01037 1.06144 1.83935 1.43289 1.33040 0.98539 1.28860 0.97957 0.96006 1.05557 1.66217 1.18385 1.17294 1.19713 1.22062 0.93608 0.89078 1.01318 1.22183 0.97351 0.97704 0.89699 0.92290 0.99749 0.99561 0.75647 0.89619 0.85513 0.88975 0.93153 0.95911 0.89899 0.87111 0.94350 0.78790 0.76077 0.88474 0.95721 0.93684 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.99 42.61 29.54 68.60 2.03 44.63 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -30.41 9.28 25.60 0.24 -30.17 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.27 14.96 5.43 85.63 0.46 15.42 16 10 N -0.71 -30.25 5.55 -466.80 -2.59 -32.84 16 11 C 0.50 20.13 7.53 87.66 0.66 20.79 16 12 O -0.58 -29.46 14.34 -3.02 -0.04 -29.50 16 13 C 0.05 1.42 5.45 85.56 0.47 1.88 16 14 N -0.54 -15.93 4.45 -900.26 -4.00 -19.93 16 15 C 0.06 1.41 5.61 86.31 0.48 1.89 16 16 C 0.07 1.75 4.88 86.31 0.42 2.17 16 17 N -0.53 -11.92 4.85 -900.25 -4.37 -16.29 16 18 C 0.13 2.47 5.73 85.55 0.49 2.96 16 19 C 0.04 0.79 4.81 41.52 0.20 0.99 16 20 C -0.24 -3.12 11.11 66.78 0.74 -2.38 16 21 S 0.16 1.53 23.22 -56.49 -1.31 0.22 16 22 C 0.01 0.17 12.23 130.66 1.60 1.77 16 23 N -0.50 -9.63 9.13 -191.55 -1.75 -11.38 16 24 C 0.07 1.73 5.58 86.31 0.48 2.22 16 25 C 0.06 1.74 5.26 86.31 0.45 2.19 16 26 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 27 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.41 14.17 8.32 -92.71 -0.77 13.40 16 30 H 0.09 1.98 8.12 -2.39 -0.02 1.97 16 31 H 0.13 2.86 8.03 -2.39 -0.02 2.84 16 32 H 0.09 1.82 8.07 -2.39 -0.02 1.80 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.85 5.97 -2.39 -0.01 1.84 16 36 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.04 0.85 8.08 -2.39 -0.02 0.83 16 38 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 2.55 5.85 -2.39 -0.01 2.54 16 Total: -1.00 -76.34 363.57 -4.35 -80.69 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.25 Total: 20.65 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 7.16 Total: 20.27 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -12.43 Total: -136.95 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.31 Total: 0.22 kcal Total: -76.34 -4.35 -80.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049442088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.499 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds