Wall clock time and date at job start Fri Apr 10 2020 18:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48492 * 109.47219 * 239.99719 * 3 2 1 5 5 H 1.48495 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46977 * 120.00037 * 3 2 1 7 7 C 1.39020 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99788 * 172.46847 * 7 2 1 9 9 N 1.36901 * 120.00046 * 352.47091 * 7 2 1 10 10 C 1.34775 * 119.99948 * 161.75979 * 9 7 2 11 11 O 1.21624 * 120.00111 * 4.27102 * 10 9 7 12 12 C 1.47488 * 120.00158 * 184.27727 * 10 9 7 13 13 C 1.39804 * 120.08824 * 20.60503 * 12 10 9 14 14 C 1.37682 * 119.90686 * 179.74606 * 13 12 10 15 15 C 1.39044 * 120.08929 * 0.53432 * 14 13 12 16 16 O 1.35697 * 119.90911 * 179.74546 * 15 14 13 17 17 C 1.35895 * 117.99676 * 256.65467 * 16 15 14 18 18 C 1.39165 * 120.47223 * 185.36665 * 17 16 15 19 19 C 1.38530 * 118.36828 * 180.02562 * 18 17 16 20 20 C 1.38257 * 119.22759 * 0.02562 * 19 18 17 21 21 N 1.31857 * 120.89122 * 0.02562 * 20 19 18 22 22 C 1.31839 * 121.77899 * 359.64980 * 21 20 19 23 23 C 1.39033 * 120.17956 * 359.71532 * 15 14 13 24 24 C 1.37675 * 120.09738 * 0.02997 * 23 15 14 25 25 C 1.46500 * 119.99710 * 342.03560 * 9 7 2 26 26 C 1.52993 * 117.50050 * 300.51534 * 25 9 7 27 27 C 1.52997 * 60.00242 * 252.51405 * 26 25 9 28 28 H 0.97006 * 120.00024 * 5.01840 * 1 2 3 29 29 H 1.08001 * 120.05155 * 359.97438 * 13 12 10 30 30 H 1.07993 * 119.95937 * 180.23228 * 14 13 12 31 31 H 1.08000 * 120.81936 * 0.03700 * 18 17 16 32 32 H 1.08006 * 120.38431 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.55776 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.65922 * 180.33664 * 22 21 20 35 35 H 1.08004 * 119.95270 * 180.02562 * 23 15 14 36 36 H 1.08000 * 120.04667 * 179.97438 * 24 23 15 37 37 H 1.08997 * 115.54955 * 86.23276 * 25 9 7 38 38 H 1.09003 * 117.49723 * 0.02562 * 26 25 9 39 39 H 1.09002 * 117.49844 * 145.01877 * 26 25 9 40 40 H 1.08997 * 117.49683 * 252.50639 * 27 26 25 41 41 H 1.09007 * 117.51848 * 107.47968 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1015 1.6965 -1.2124 5 1 1.2828 2.7465 0.0006 6 1 3.1015 1.6965 1.2126 7 6 2.0089 -1.2039 -0.0005 8 1 3.0819 -1.2079 -0.1231 9 7 1.3333 -2.3845 0.1543 10 6 1.9152 -3.5460 -0.2046 11 8 3.0677 -3.5543 -0.5929 12 6 1.1543 -4.8070 -0.1266 13 6 -0.2434 -4.7822 -0.1068 14 6 -0.9501 -5.9619 -0.0392 15 6 -0.2754 -7.1762 0.0206 16 8 -0.9755 -8.3364 0.0924 17 6 -1.0546 -8.9602 1.2971 18 6 -1.6633 -10.2068 1.4077 19 6 -1.7204 -10.8029 2.6569 20 6 -1.1758 -10.1452 3.7442 21 7 -0.6068 -8.9639 3.6055 22 6 -0.5262 -8.3654 2.4335 23 6 1.1146 -7.2049 0.0064 24 6 1.8287 -6.0301 -0.0663 25 6 -0.0245 -2.3847 0.7044 26 6 -0.2181 -1.8073 2.1079 27 6 -0.3091 -3.3179 1.8829 28 1 -0.4850 0.8369 -0.0735 29 1 -0.7682 -3.8392 -0.1482 30 1 -2.0298 -5.9439 -0.0276 31 1 -2.0808 -10.6976 0.5409 32 1 -2.1849 -11.7702 2.7799 33 1 -1.2177 -10.6049 4.7206 34 1 -0.0478 -7.4001 2.3582 35 1 1.6349 -8.1502 0.0526 36 1 2.9084 -6.0533 -0.0768 37 1 -0.8248 -2.2292 -0.0190 38 1 0.6647 -1.4270 2.6219 39 1 -1.1460 -1.2715 2.3081 40 1 -1.2967 -3.7759 1.9352 41 1 0.5139 -3.9320 2.2488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:09 Heat of formation + Delta-G solvation = 65.448471 kcal Electronic energy + Delta-G solvation = -26818.086249 eV Core-core repulsion = 23052.286972 eV Total energy + Delta-G solvation = -3765.799277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17966 -39.87644 -38.88793 -36.91873 -36.26307 -33.26657 -32.57868 -31.37826 -30.91223 -30.65552 -29.59647 -25.53142 -24.18951 -23.73765 -22.89858 -22.48713 -21.64884 -21.15336 -19.42210 -18.76192 -17.43720 -17.17178 -16.80304 -16.61075 -15.84778 -15.27879 -15.10866 -14.57314 -14.48633 -14.27602 -14.11861 -13.91188 -13.43680 -13.38329 -13.25361 -12.99428 -12.62803 -12.54855 -12.33261 -12.08073 -11.71695 -11.22579 -11.20001 -10.88982 -10.64490 -10.54610 -10.45015 -10.02346 -9.95821 -9.69467 -9.45612 -8.96221 -8.72520 -8.67374 -8.50235 -8.24661 -7.93214 -6.45660 -3.96712 0.89275 0.99869 1.11261 1.61074 2.94885 3.14002 3.17017 3.20579 3.60735 3.62525 3.97801 4.31156 4.38157 4.52045 4.59323 4.61848 4.66658 4.83221 5.01930 5.03857 5.12338 5.17020 5.35609 5.38617 5.64596 5.67898 5.68508 5.76003 5.81410 5.84715 5.95260 6.08282 6.21988 6.23366 6.38914 6.50324 6.51402 6.68708 6.79052 6.85626 6.91926 7.03690 7.41901 7.49027 7.78644 7.93404 8.32857 9.02750 9.23488 9.82200 10.55392 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.003116 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.074861 B = 8983.278615 C = 9392.189482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.037 3.963 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.403 5.403 10 C 0.473 3.527 11 O -0.588 6.588 12 C -0.088 4.088 13 C -0.086 4.086 14 C -0.130 4.130 15 C 0.065 3.935 16 O -0.251 6.251 17 C 0.077 3.923 18 C -0.109 4.109 19 C -0.137 4.137 20 C 0.057 3.943 21 N -0.450 5.450 22 C 0.036 3.964 23 C -0.144 4.144 24 C -0.064 4.064 25 C 0.131 3.869 26 C -0.140 4.140 27 C -0.221 4.221 28 H 0.271 0.729 29 H 0.161 0.839 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 -15.214 4.503 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.119 5.119 10 C 0.264 3.736 11 O -0.475 6.475 12 C -0.092 4.092 13 C -0.105 4.105 14 C -0.149 4.149 15 C 0.023 3.977 16 O -0.161 6.161 17 C 0.031 3.969 18 C -0.135 4.135 19 C -0.157 4.157 20 C -0.100 4.100 21 N -0.159 5.159 22 C -0.123 4.123 23 C -0.162 4.162 24 C -0.084 4.084 25 C 0.026 3.974 26 C -0.178 4.178 27 C -0.259 4.259 28 H 0.082 0.918 29 H 0.178 0.822 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.879 -14.628 4.925 16.898 hybrid contribution -0.089 0.497 -0.703 0.866 sum -6.967 -14.131 4.222 16.311 Atomic orbital electron populations 1.69849 1.05901 1.28115 1.46551 1.25329 0.95632 0.99706 0.96134 0.85923 0.78968 0.80192 0.79289 1.19681 1.20774 1.19755 1.19740 0.93576 0.81843 1.47857 0.87697 1.43144 1.12286 1.05544 1.50909 1.17719 0.87557 0.83124 0.85214 1.90624 1.17623 1.86202 1.53025 1.20403 0.93662 0.94875 1.00259 1.22338 0.93854 0.99168 0.95103 1.21118 1.00354 0.90610 1.02800 1.18781 0.89961 0.83896 1.05043 1.84354 1.68879 1.35325 1.27543 1.20337 0.97379 0.93315 0.85819 1.20938 1.00753 0.92780 0.99036 1.21997 1.00093 1.01158 0.92467 1.22713 0.96493 0.91575 0.99249 1.67599 1.13456 1.09564 1.25293 1.23127 1.00693 1.01105 0.87343 1.21200 0.92615 0.98943 1.03479 1.21089 1.00642 0.90264 0.96399 1.21258 0.86454 1.00321 0.89415 1.22949 1.02206 0.92827 0.99810 1.23792 1.02068 0.94456 1.05551 0.91786 0.82197 0.85293 0.83982 0.84129 0.82599 0.82100 0.85612 0.84633 0.86297 0.89617 0.89413 0.88956 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.02 9.93 55.50 0.55 -20.47 16 2 C 0.04 0.92 5.09 -17.45 -0.09 0.83 16 3 Si 0.93 19.80 29.56 -169.99 -5.03 14.77 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.30 -8.03 9.27 -15.00 -0.14 -8.16 16 8 H 0.11 2.94 7.29 -52.49 -0.38 2.56 16 9 N -0.40 -9.87 2.93 -108.92 -0.32 -10.19 16 10 C 0.47 11.49 7.34 -12.49 -0.09 11.40 16 11 O -0.59 -16.22 16.17 5.26 0.09 -16.14 16 12 C -0.09 -1.72 4.86 -104.96 -0.51 -2.23 16 13 C -0.09 -1.45 6.31 -39.20 -0.25 -1.69 16 14 C -0.13 -1.90 9.97 -39.49 -0.39 -2.29 16 15 C 0.07 0.95 4.34 -38.99 -0.17 0.78 16 16 O -0.25 -3.44 9.98 -2.97 -0.03 -3.47 16 17 C 0.08 0.97 6.62 -39.06 -0.26 0.71 16 18 C -0.11 -1.08 10.13 -39.13 -0.40 -1.48 16 19 C -0.14 -1.15 10.11 -39.47 -0.40 -1.55 16 20 C 0.06 0.57 11.18 -17.53 -0.20 0.37 16 21 N -0.45 -5.92 10.36 -13.12 -0.14 -6.06 16 22 C 0.04 0.48 10.16 -17.37 -0.18 0.30 16 23 C -0.14 -2.13 9.15 -39.49 -0.36 -2.49 16 24 C -0.06 -1.12 9.58 -39.20 -0.38 -1.49 16 25 C 0.13 2.71 1.95 -67.93 -0.13 2.58 16 26 C -0.14 -2.73 8.81 -26.74 -0.24 -2.96 16 27 C -0.22 -3.83 6.84 -26.73 -0.18 -4.01 16 28 H 0.27 6.30 8.32 -40.82 -0.34 5.96 16 29 H 0.16 2.73 3.76 -52.49 -0.20 2.53 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.16 2.26 6.51 -52.49 -0.34 1.92 16 35 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.14 2.36 7.79 -52.49 -0.41 1.95 16 37 H 0.12 2.52 6.71 -51.93 -0.35 2.17 16 38 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.09 1.36 7.82 -51.93 -0.41 0.96 16 41 H 0.09 1.58 7.52 -51.93 -0.39 1.19 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -29.65 344.25 -8.61 -38.26 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.57 Total: 9.51 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.35 Total: -11.40 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.10 Total: -36.72 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.06 Total: -19.61 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.65 -8.61 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.705 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds