Wall clock time and date at job start Fri Apr 10 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48492 * 109.47219 * 239.99719 * 3 2 1 5 5 H 1.48495 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46977 * 120.00037 * 3 2 1 7 7 C 1.39020 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99788 * 172.46847 * 7 2 1 9 9 N 1.36901 * 120.00046 * 352.47091 * 7 2 1 10 10 C 1.34775 * 119.99948 * 161.75979 * 9 7 2 11 11 O 1.21624 * 120.00111 * 4.27102 * 10 9 7 12 12 C 1.47488 * 120.00158 * 184.27727 * 10 9 7 13 13 C 1.39804 * 120.08824 * 20.60503 * 12 10 9 14 14 C 1.37682 * 119.90686 * 179.74606 * 13 12 10 15 15 C 1.39044 * 120.08929 * 0.53432 * 14 13 12 16 16 O 1.35697 * 119.90911 * 179.74546 * 15 14 13 17 17 C 1.35895 * 117.99676 * 256.65467 * 16 15 14 18 18 C 1.39165 * 120.47223 * 185.36665 * 17 16 15 19 19 C 1.38530 * 118.36828 * 180.02562 * 18 17 16 20 20 C 1.38257 * 119.22759 * 0.02562 * 19 18 17 21 21 N 1.31857 * 120.89122 * 0.02562 * 20 19 18 22 22 C 1.31839 * 121.77899 * 359.64980 * 21 20 19 23 23 C 1.39033 * 120.17956 * 359.71532 * 15 14 13 24 24 C 1.37675 * 120.09738 * 0.02997 * 23 15 14 25 25 C 1.46500 * 119.99710 * 342.03560 * 9 7 2 26 26 C 1.52993 * 117.50050 * 300.51534 * 25 9 7 27 27 C 1.52997 * 60.00242 * 252.51405 * 26 25 9 28 28 H 0.97006 * 120.00024 * 5.01840 * 1 2 3 29 29 H 1.08001 * 120.05155 * 359.97438 * 13 12 10 30 30 H 1.07993 * 119.95937 * 180.23228 * 14 13 12 31 31 H 1.08000 * 120.81936 * 0.03700 * 18 17 16 32 32 H 1.08006 * 120.38431 * 180.02562 * 19 18 17 33 33 H 1.07993 * 119.55776 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.65922 * 180.33664 * 22 21 20 35 35 H 1.08004 * 119.95270 * 180.02562 * 23 15 14 36 36 H 1.08000 * 120.04667 * 179.97438 * 24 23 15 37 37 H 1.08997 * 115.54955 * 86.23276 * 25 9 7 38 38 H 1.09003 * 117.49723 * 0.02562 * 26 25 9 39 39 H 1.09002 * 117.49844 * 145.01877 * 26 25 9 40 40 H 1.08997 * 117.49683 * 252.50639 * 27 26 25 41 41 H 1.09007 * 117.51848 * 107.47968 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1015 1.6965 -1.2124 5 1 1.2828 2.7465 0.0006 6 1 3.1015 1.6965 1.2126 7 6 2.0089 -1.2039 -0.0005 8 1 3.0819 -1.2079 -0.1231 9 7 1.3333 -2.3845 0.1543 10 6 1.9152 -3.5460 -0.2046 11 8 3.0677 -3.5543 -0.5929 12 6 1.1543 -4.8070 -0.1266 13 6 -0.2434 -4.7822 -0.1068 14 6 -0.9501 -5.9619 -0.0392 15 6 -0.2754 -7.1762 0.0206 16 8 -0.9755 -8.3364 0.0924 17 6 -1.0546 -8.9602 1.2971 18 6 -1.6633 -10.2068 1.4077 19 6 -1.7204 -10.8029 2.6569 20 6 -1.1758 -10.1452 3.7442 21 7 -0.6068 -8.9639 3.6055 22 6 -0.5262 -8.3654 2.4335 23 6 1.1146 -7.2049 0.0064 24 6 1.8287 -6.0301 -0.0663 25 6 -0.0245 -2.3847 0.7044 26 6 -0.2181 -1.8073 2.1079 27 6 -0.3091 -3.3179 1.8829 28 1 -0.4850 0.8369 -0.0735 29 1 -0.7682 -3.8392 -0.1482 30 1 -2.0298 -5.9439 -0.0276 31 1 -2.0808 -10.6976 0.5409 32 1 -2.1849 -11.7702 2.7799 33 1 -1.2177 -10.6049 4.7206 34 1 -0.0478 -7.4001 2.3582 35 1 1.6349 -8.1502 0.0526 36 1 2.9084 -6.0533 -0.0768 37 1 -0.8248 -2.2292 -0.0190 38 1 0.6647 -1.4270 2.6219 39 1 -1.1460 -1.2715 2.3081 40 1 -1.2967 -3.7759 1.9352 41 1 0.5139 -3.9320 2.2488 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058289918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:08 Heat of formation + Delta-G solvation = 48.855520 kcal Electronic energy + Delta-G solvation = -26818.805773 eV Core-core repulsion = 23052.286972 eV Total energy + Delta-G solvation = -3766.518802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22666 -41.32135 -40.01764 -38.24700 -38.05143 -35.06263 -33.43599 -33.17036 -32.11103 -31.80618 -30.80833 -27.28653 -25.40979 -24.62159 -24.20026 -23.86301 -23.07732 -22.60288 -21.02553 -19.86596 -19.06544 -18.27653 -18.13080 -17.60862 -17.16256 -17.03998 -16.47999 -15.91571 -15.85499 -15.60280 -15.36605 -15.08845 -14.92381 -14.81542 -14.38068 -14.12312 -13.99311 -13.73960 -13.67315 -13.23367 -13.17398 -12.98807 -12.80807 -12.49341 -12.30339 -12.15128 -11.96160 -11.75796 -11.08761 -10.74961 -10.71371 -10.53015 -10.31444 -9.99300 -9.80283 -9.74143 -9.45554 -8.33415 -5.95889 -0.31368 0.11879 0.27321 0.34013 1.37491 1.40464 1.48963 1.75898 2.20386 2.22471 2.75245 2.80318 2.88129 3.04410 3.19373 3.53711 3.70433 3.78941 3.85759 3.88227 3.97843 4.10466 4.14650 4.25252 4.29630 4.37347 4.42992 4.51478 4.63824 4.75131 4.79232 4.97058 5.00557 5.08527 5.13359 5.17310 5.24016 5.32285 5.37789 5.43130 5.47017 5.51370 5.73831 6.01158 6.40232 6.45506 6.97342 7.10721 7.37244 7.95369 8.64778 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.003116 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.074861 B = 8983.278615 C = 9392.189482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.273 1.273 7 C -0.348 4.348 8 H 0.072 0.928 9 N -0.414 5.414 10 C 0.461 3.539 11 O -0.639 6.639 12 C -0.115 4.115 13 C -0.079 4.079 14 C -0.121 4.121 15 C 0.086 3.914 16 O -0.253 6.253 17 C 0.058 3.942 18 C -0.104 4.104 19 C -0.121 4.121 20 C 0.054 3.946 21 N -0.483 5.483 22 C 0.016 3.984 23 C -0.135 4.135 24 C -0.069 4.069 25 C 0.113 3.887 26 C -0.144 4.144 27 C -0.181 4.181 28 H 0.277 0.723 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 -18.009 5.429 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.199 1.199 7 C -0.476 4.476 8 H 0.090 0.910 9 N -0.129 5.129 10 C 0.253 3.747 11 O -0.530 6.530 12 C -0.119 4.119 13 C -0.097 4.097 14 C -0.139 4.139 15 C 0.044 3.956 16 O -0.164 6.164 17 C 0.013 3.987 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.104 4.104 21 N -0.193 5.193 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.088 4.088 25 C 0.008 3.992 26 C -0.182 4.182 27 C -0.219 4.219 28 H 0.088 0.912 29 H 0.177 0.823 30 H 0.177 0.823 31 H 0.184 0.816 32 H 0.201 0.799 33 H 0.202 0.798 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.102 -17.427 5.866 20.980 hybrid contribution 0.809 1.078 -0.920 1.632 sum -9.293 -16.349 4.947 19.445 Atomic orbital electron populations 1.69905 1.06188 1.28957 1.45450 1.25901 0.96559 1.01506 0.95069 0.85128 0.78114 0.77224 0.78695 1.20366 1.18880 1.19867 1.19588 0.92740 0.83816 1.51433 0.91034 1.43283 1.13525 1.05029 1.51082 1.18545 0.87370 0.84716 0.84086 1.90554 1.19960 1.87336 1.55110 1.20089 0.94686 0.93079 1.04002 1.22230 0.92468 1.00148 0.94869 1.21326 1.01690 0.89533 1.01380 1.18833 0.89804 0.84575 1.02428 1.84311 1.68863 1.34768 1.28471 1.20469 0.99032 0.94449 0.84763 1.21364 0.99476 0.91565 1.00648 1.22455 0.98333 1.02214 0.91026 1.23333 0.95199 0.90567 1.01250 1.67569 1.14969 1.11335 1.25403 1.22915 1.01947 1.01075 0.88114 1.21310 0.93045 0.98644 1.02352 1.21037 1.00362 0.90592 0.96839 1.21304 0.84571 1.03365 0.89917 1.22922 1.01814 0.94756 0.98696 1.23756 1.03406 0.93032 1.01663 0.91237 0.82322 0.82262 0.81594 0.79878 0.79812 0.83830 0.83546 0.85758 0.86607 0.92101 0.87827 0.85192 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.54 9.93 21.68 0.22 -42.33 16 2 C 0.01 0.74 5.09 84.95 0.43 1.17 16 3 Si 0.98 41.60 29.56 68.60 2.03 43.63 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.35 -19.68 9.27 84.09 0.78 -18.90 16 8 H 0.07 4.39 7.29 -2.91 -0.02 4.37 16 9 N -0.41 -21.47 2.93 -616.76 -1.81 -23.28 16 10 C 0.46 23.90 7.34 86.68 0.64 24.54 16 11 O -0.64 -38.23 16.17 -4.11 -0.07 -38.30 16 12 C -0.12 -4.65 4.86 -20.08 -0.10 -4.75 16 13 C -0.08 -2.60 6.31 22.52 0.14 -2.45 16 14 C -0.12 -3.24 9.97 22.33 0.22 -3.02 16 15 C 0.09 2.32 4.34 22.65 0.10 2.42 16 16 O -0.25 -6.20 9.98 -33.56 -0.33 -6.53 16 17 C 0.06 1.28 6.62 22.61 0.15 1.43 16 18 C -0.10 -1.63 10.13 22.56 0.23 -1.40 16 19 C -0.12 -1.43 10.11 22.34 0.23 -1.20 16 20 C 0.05 0.88 11.18 84.69 0.95 1.82 16 21 N -0.48 -11.74 10.36 -195.42 -2.02 -13.77 16 22 C 0.02 0.41 10.16 84.81 0.86 1.28 16 23 C -0.14 -3.88 9.15 22.33 0.20 -3.67 16 24 C -0.07 -2.45 9.58 22.51 0.22 -2.24 16 25 C 0.11 4.76 1.95 44.99 0.09 4.85 16 26 C -0.14 -5.64 8.81 30.59 0.27 -5.37 16 27 C -0.18 -6.16 6.84 30.59 0.21 -5.95 16 28 H 0.28 12.73 8.32 -92.70 -0.77 11.96 16 29 H 0.16 5.31 3.76 -2.91 -0.01 5.30 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.14 3.96 6.51 -2.91 -0.02 3.94 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.12 4.63 7.79 -2.91 -0.02 4.61 16 37 H 0.12 4.94 6.71 -2.39 -0.02 4.92 16 38 H 0.06 2.67 8.14 -2.39 -0.02 2.66 16 39 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.13 3.45 7.82 -2.39 -0.02 3.43 16 41 H 0.08 2.79 7.52 -2.38 -0.02 2.77 16 Total: -1.00 -69.89 344.25 4.69 -65.20 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 1.07 Total: 26.82 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 5.61 Total: -11.44 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -3.62 Total: -79.38 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.40 Total: -44.83 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -69.89 4.69 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.051 kcal (2) G-P(sol) polarization free energy of solvation -69.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds