Wall clock time and date at job start Fri Apr 10 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47216 * 2 1 4 4 C 1.50712 * 109.47095 * 119.99639 * 2 1 3 5 5 H 1.08001 * 119.99795 * 114.54724 * 4 2 1 6 6 C 1.37874 * 120.00026 * 294.55264 * 4 2 1 7 7 N 1.31518 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00132 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46818 * 60.00084 * 8 6 4 10 10 H 1.48494 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46873 * 300.00055 * 8 6 4 12 12 N 1.46897 * 109.47485 * 239.99479 * 2 1 3 13 13 C 1.46894 * 111.00160 * 300.14535 * 12 2 1 14 14 C 1.53246 * 109.34076 * 187.25069 * 13 12 2 15 15 N 1.47073 * 108.52067 * 306.16676 * 14 13 12 16 16 C 1.34771 * 120.88520 * 231.18908 * 15 14 13 17 17 O 1.21589 * 119.99735 * 5.83173 * 16 15 14 18 18 C 1.47571 * 120.00220 * 185.84196 * 16 15 14 19 19 C 1.39734 * 120.14244 * 53.52722 * 18 16 15 20 20 C 1.37732 * 119.90197 * 180.02562 * 19 18 16 21 21 C 1.38763 * 120.19449 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.85668 * 179.97438 * 21 20 19 23 23 C 1.38484 * 120.28413 * 0.02562 * 21 20 19 24 24 C 1.38193 * 120.09637 * 359.97438 * 23 21 20 25 25 F 1.35098 * 120.10308 * 180.02562 * 24 23 21 26 26 C 1.47086 * 118.23531 * 51.45711 * 15 14 13 27 27 C 1.46902 * 110.99827 * 64.44334 * 12 2 1 28 28 H 1.09003 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47586 * 300.00002 * 1 2 3 30 30 H 1.09003 * 109.47122 * 60.00140 * 1 2 3 31 31 H 0.97004 * 119.99923 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.49603 * 67.28888 * 13 12 2 33 33 H 1.09000 * 109.51510 * 307.22521 * 13 12 2 34 34 H 1.09000 * 109.62855 * 186.45920 * 14 13 12 35 35 H 1.08994 * 109.78772 * 65.97457 * 14 13 12 36 36 H 1.07999 * 120.04525 * 0.03511 * 19 18 16 37 37 H 1.08005 * 119.89890 * 180.27896 * 20 19 18 38 38 H 1.08000 * 119.95111 * 179.97438 * 23 21 20 39 39 H 1.09004 * 109.62563 * 68.25321 * 26 15 14 40 40 H 1.08996 * 109.62698 * 188.83056 * 26 15 14 41 41 H 1.09004 * 109.49130 * 292.70979 * 27 12 2 42 42 H 1.09003 * 109.49228 * 52.76302 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.5787 -1.6370 1.1340 6 6 1.7943 -0.1774 2.4797 7 7 1.1294 0.9512 2.5972 8 14 2.4164 -1.0583 4.0050 9 1 3.8954 -1.1750 3.9406 10 1 2.0335 -0.2852 5.2137 11 1 1.8153 -2.4144 4.0731 12 7 2.0197 -0.6926 -1.1993 13 6 1.5459 -2.0826 -1.2349 14 6 2.2209 -2.8192 -2.3969 15 7 1.9930 -2.0528 -3.6313 16 6 1.5011 -2.6493 -4.7352 17 8 1.1401 -3.8095 -4.6895 18 6 1.4008 -1.8945 -5.9993 19 6 2.5231 -1.2447 -6.5195 20 6 2.4238 -0.5412 -7.6994 21 6 1.2125 -0.4763 -8.3733 22 9 1.1226 0.2162 -9.5299 23 6 0.0952 -1.1173 -7.8649 24 6 0.1815 -1.8265 -6.6820 25 9 -0.9083 -2.4524 -6.1862 26 6 2.3218 -0.6191 -3.6309 27 6 1.6374 0.0321 -2.4187 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.9616 1.3260 3.4761 32 1 0.4651 -2.0950 -1.3752 33 1 1.7965 -2.5768 -0.2963 34 1 1.7894 -3.8149 -2.4993 35 1 3.2914 -2.9017 -2.2095 36 1 3.4671 -1.2942 -5.9971 37 1 3.2924 -0.0427 -8.1037 38 1 -0.8449 -1.0629 -8.3937 39 1 3.4019 -0.4912 -3.5580 40 1 1.9571 -0.1596 -4.5495 41 1 0.5552 -0.0098 -2.5424 42 1 1.9544 1.0719 -2.3383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065625979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:15 Heat of formation + Delta-G solvation = -97.387770 kcal Electronic energy + Delta-G solvation = -27781.501363 eV Core-core repulsion = 23590.244541 eV Total energy + Delta-G solvation = -4191.256822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.21081 -50.10415 -41.57834 -39.74187 -38.95974 -36.51488 -34.41198 -32.83650 -31.94560 -31.61907 -30.80915 -27.56560 -27.25365 -25.23790 -24.63435 -24.02265 -23.10492 -21.66523 -20.18683 -19.26505 -18.64464 -18.29809 -18.24357 -17.43319 -17.10365 -16.87274 -16.77023 -16.42686 -16.14735 -15.99617 -15.80529 -15.55761 -15.49327 -15.14059 -14.98399 -14.53046 -14.16713 -13.95966 -13.75692 -13.55125 -13.28393 -13.06313 -12.90841 -12.80795 -12.66048 -12.55999 -12.49739 -12.34540 -12.12684 -11.87567 -11.58216 -11.17154 -10.88611 -10.49568 -10.22632 -9.95644 -9.78188 -8.91959 -8.11516 -6.20601 -0.49202 -0.11902 1.37819 1.45366 1.45748 1.53041 1.79631 2.24971 2.44080 2.67368 3.14026 3.18556 3.24363 3.31370 3.48528 3.80421 3.94332 4.01516 4.07774 4.23282 4.28072 4.45087 4.50709 4.60473 4.64268 4.67505 4.74136 4.76912 4.82573 4.86824 4.89358 4.94442 5.00221 5.02707 5.16844 5.33429 5.52435 5.57055 5.66803 5.72488 6.14670 6.22571 6.43210 6.69516 6.90789 6.92128 7.48329 8.96256 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.002921 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.678366 B = 9584.662937 C = 9863.236973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H 0.019 0.981 4 C -0.516 4.516 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.530 5.530 13 C 0.055 3.945 14 C 0.124 3.876 15 N -0.598 5.598 16 C 0.559 3.441 17 O -0.575 6.575 18 C -0.185 4.185 19 C -0.020 4.020 20 C -0.145 4.145 21 C 0.150 3.850 22 F -0.126 7.126 23 C -0.192 4.192 24 C 0.150 3.850 25 F -0.139 7.139 26 C 0.117 3.883 27 C 0.034 3.966 28 H 0.025 0.975 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.011 0.989 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.168 0.832 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.017 0.983 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -0.557 -22.601 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.554 4.554 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.074 4.074 14 C 0.002 3.998 15 N -0.329 5.329 16 C 0.348 3.652 17 O -0.456 6.456 18 C -0.189 4.189 19 C -0.038 4.038 20 C -0.164 4.164 21 C 0.130 3.870 22 F -0.104 7.104 23 C -0.212 4.212 24 C 0.129 3.871 25 F -0.117 7.117 26 C -0.005 4.005 27 C -0.095 4.095 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.194 0.806 37 H 0.204 0.796 38 H 0.185 0.815 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.035 0.965 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.278 -1.037 -22.421 22.849 hybrid contribution -1.562 -0.321 1.249 2.026 sum 2.716 -1.358 -21.173 21.389 Atomic orbital electron populations 1.22179 1.01058 0.98590 0.99455 1.19052 0.89298 0.93542 0.87055 0.96358 1.21377 1.34651 1.08432 0.90943 0.91995 1.25661 0.95472 0.95643 1.01804 1.70030 1.41618 1.20274 1.24272 0.85648 0.79011 0.78461 0.78739 1.19461 1.21386 1.19939 1.62244 1.59261 1.01619 1.02232 1.22260 0.95721 0.90776 0.98667 1.21747 1.01622 0.94836 0.81644 1.48216 1.62348 1.11260 1.11078 1.18407 0.76753 0.86112 0.83976 1.90786 1.50217 1.18993 1.85570 1.20002 0.95473 1.05905 0.97535 1.21317 0.97361 0.90709 0.94393 1.21492 0.97807 1.01759 0.95320 1.17577 0.94117 0.92329 0.82933 1.91572 1.96849 1.76305 1.45704 1.21075 1.01773 1.01889 0.96451 1.17496 0.82339 0.94158 0.93073 1.91544 1.52747 1.80145 1.87274 1.22268 1.02020 0.77895 0.98294 1.22605 0.97103 0.99050 0.90702 0.95611 0.92983 0.95625 0.93042 0.97125 0.90013 0.89932 0.89003 0.80646 0.79638 0.81489 0.87784 0.87346 0.96470 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.31 8.34 71.98 0.60 -6.71 16 2 C 0.22 10.46 2.25 44.17 0.10 10.56 16 3 H 0.02 0.98 8.08 -2.39 -0.02 0.97 16 4 C -0.52 -27.11 7.90 25.60 0.20 -26.91 16 5 H 0.06 3.20 6.51 -2.91 -0.02 3.18 16 6 C 0.01 0.70 5.32 84.65 0.45 1.15 16 7 N -0.92 -52.09 11.73 21.45 0.25 -51.84 16 8 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.53 -20.61 4.61 -873.46 -4.03 -24.64 16 13 C 0.05 2.05 4.79 86.39 0.41 2.47 16 14 C 0.12 3.81 6.61 86.35 0.57 4.38 16 15 N -0.60 -16.48 3.00 -820.78 -2.46 -18.95 16 16 C 0.56 16.40 6.90 86.71 0.60 17.00 16 17 O -0.58 -21.67 16.29 -4.00 -0.07 -21.74 16 18 C -0.19 -4.04 4.62 -20.05 -0.09 -4.13 16 19 C -0.02 -0.25 7.81 22.51 0.18 -0.07 16 20 C -0.15 -1.37 10.01 22.28 0.22 -1.15 16 21 C 0.15 1.97 7.30 22.45 0.16 2.13 16 22 F -0.13 -1.71 17.26 44.97 0.78 -0.93 16 23 C -0.19 -3.13 9.99 22.32 0.22 -2.91 16 24 C 0.15 3.40 7.27 22.66 0.16 3.56 16 25 F -0.14 -4.02 16.64 44.97 0.75 -3.27 16 26 C 0.12 2.62 5.69 86.50 0.49 3.11 16 27 C 0.03 1.07 5.14 86.54 0.44 1.52 16 28 H 0.02 1.20 6.57 -2.39 -0.02 1.19 16 29 H 0.05 2.76 6.52 -2.39 -0.02 2.74 16 30 H 0.02 1.09 6.67 -2.39 -0.02 1.07 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.01 0.43 6.72 -2.39 -0.02 0.42 16 33 H 0.08 3.32 6.18 -2.39 -0.01 3.30 16 34 H 0.08 2.67 7.04 -2.39 -0.02 2.65 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.18 1.39 7.73 -2.91 -0.02 1.37 16 37 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.11 1.85 5.53 -2.39 -0.01 1.83 16 41 H 0.02 0.59 6.80 -2.39 -0.02 0.57 16 42 H 0.09 2.65 8.06 -2.39 -0.02 2.63 16 Total: -1.00 -67.67 343.43 3.04 -64.63 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.06 Total: 7.97 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 4.73 Total: 4.00 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -6.24 Total: -95.43 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.07 Total: -21.74 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.52 Total: -4.21 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.67 3.04 -64.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065625979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.755 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds