Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29023 * 124.91786 * 2 1 4 4 C 1.31783 * 117.12566 * 180.22973 * 3 2 1 5 5 C 1.50701 * 122.75147 * 179.75659 * 4 3 2 6 6 N 1.46900 * 109.46924 * 274.71084 * 5 4 3 7 7 C 1.46958 * 111.00076 * 169.99597 * 6 5 4 8 8 C 1.53050 * 109.36408 * 176.81070 * 7 6 5 9 9 N 1.46958 * 109.36489 * 58.40551 * 8 7 6 10 10 C 1.46900 * 111.00071 * 176.81020 * 9 8 7 11 11 C 1.50704 * 109.46955 * 293.63909 * 10 9 8 12 12 O 1.21292 * 120.00196 * 353.79397 * 11 10 9 13 13 N 1.34783 * 119.99931 * 173.80130 * 11 10 9 14 14 C 1.37096 * 119.99667 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00270 * 359.97438 * 14 13 11 16 16 C 1.38957 * 119.99330 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99608 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00196 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46989 * 90.00083 * 18 16 14 20 20 H 1.48503 * 109.47253 * 209.99965 * 18 16 14 21 21 H 1.48496 * 109.47506 * 329.99935 * 18 16 14 22 22 C 1.46950 * 110.87851 * 300.67896 * 9 8 7 23 23 C 1.46958 * 111.00071 * 46.19988 * 6 5 4 24 24 C 1.33634 * 114.49896 * 359.48626 * 4 3 2 25 25 S 1.70984 * 124.91477 * 179.70539 * 2 1 3 26 26 H 1.09001 * 109.46843 * 180.32436 * 1 2 3 27 27 H 1.08997 * 109.46879 * 300.32312 * 1 2 3 28 28 H 1.08999 * 109.47534 * 60.32230 * 1 2 3 29 29 H 1.08995 * 109.47204 * 154.71578 * 5 4 3 30 30 H 1.08999 * 109.47157 * 34.70671 * 5 4 3 31 31 H 1.09001 * 109.48473 * 56.84671 * 7 6 5 32 32 H 1.09002 * 109.49015 * 296.78145 * 7 6 5 33 33 H 1.09007 * 109.48551 * 178.37011 * 8 7 6 34 34 H 1.09000 * 109.49180 * 298.43544 * 8 7 6 35 35 H 1.08994 * 109.47275 * 53.63640 * 10 9 8 36 36 H 1.08999 * 109.47336 * 173.63784 * 10 9 8 37 37 H 0.97002 * 119.99812 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99800 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.48776 * 299.35125 * 22 9 8 40 40 H 1.09000 * 109.49095 * 179.28906 * 22 9 8 41 41 H 1.08998 * 109.49037 * 303.15526 * 23 6 5 42 42 H 1.09000 * 109.48963 * 63.21841 * 23 6 5 43 43 H 1.08000 * 126.03712 * 180.25963 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0047 5 6 4.5308 2.0245 -0.0107 6 7 4.7573 2.4678 -1.3927 7 6 5.5159 3.7261 -1.4246 8 6 5.7990 4.1113 -2.8785 9 7 4.5276 4.2478 -3.6028 10 6 4.7541 4.6912 -4.9849 11 6 5.3077 6.0929 -4.9784 12 8 5.3898 6.7077 -3.9361 13 7 5.7115 6.6633 -6.1309 14 6 6.2146 7.9386 -6.1251 15 1 6.2870 8.4863 -5.1971 16 6 6.6314 8.5264 -7.3132 17 7 7.1132 9.7490 -7.3077 18 14 6.5067 7.5788 -8.9181 19 1 5.1848 7.8365 -9.5437 20 1 7.5848 8.0207 -9.8389 21 1 6.6516 6.1259 -8.6476 22 6 3.7690 2.9897 -3.5710 23 6 3.4859 2.6044 -2.1171 24 6 3.9354 -0.4006 0.0020 25 16 2.4856 -1.4021 0.0072 26 1 -0.3633 -1.0277 0.0058 27 1 -0.3633 0.5188 0.8871 28 1 -0.3634 0.5088 -0.8928 29 1 5.4747 1.6974 0.4252 30 1 4.1272 2.8509 0.5744 31 1 6.4584 3.5959 -0.8927 32 1 4.9339 4.5139 -0.9463 33 1 6.3365 5.0592 -2.9054 34 1 6.4041 3.3362 -3.3489 35 1 5.4652 4.0220 -5.4692 36 1 3.8108 4.6756 -5.5307 37 1 5.6461 6.1714 -6.9645 38 1 7.4044 10.1593 -8.1370 39 1 4.3510 2.2019 -4.0492 40 1 2.8265 3.1198 -4.1028 41 1 2.9484 1.6566 -2.0901 42 1 2.8808 3.3794 -1.6467 43 1 4.9545 -0.7581 0.0037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066492323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = 38.458551 kcal Electronic energy + Delta-G solvation = -24916.739799 eV Core-core repulsion = 21317.506854 eV Total energy + Delta-G solvation = -3599.232946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50864 -39.17647 -37.89237 -35.28328 -33.85350 -32.68805 -31.63409 -30.73968 -29.63656 -28.40050 -26.59232 -24.78643 -23.71850 -23.13934 -22.23278 -19.99122 -19.56134 -19.31207 -18.24873 -17.91453 -16.44050 -16.00431 -15.62831 -15.08139 -15.02535 -14.88543 -14.79777 -14.63438 -14.10269 -13.88057 -13.76351 -13.64526 -13.18372 -13.06715 -12.78578 -12.59608 -12.48016 -12.18739 -12.09670 -11.71934 -11.68017 -11.39170 -11.15064 -11.05864 -10.68539 -10.67666 -10.56451 -9.95033 -9.91749 -9.66522 -9.50781 -9.08031 -8.54329 -8.33185 -8.14613 -7.89156 -6.28391 -3.79418 0.42333 1.05567 1.41785 2.42901 3.04783 3.08970 3.16859 3.69398 3.78490 3.97152 4.04190 4.12926 4.56644 4.79017 4.80136 4.95043 4.97614 5.04666 5.08872 5.22629 5.25937 5.29925 5.43737 5.47766 5.53217 5.55286 5.59285 5.65359 5.74752 5.84306 5.85318 5.97571 5.98145 6.04525 6.23577 6.35833 6.90127 6.98329 7.26208 7.38867 7.47110 7.62294 8.17788 8.63893 8.98528 9.45876 9.87664 10.84844 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.002269 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.907483 B =12337.956411 C =12619.147424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 N -0.467 5.467 4 C 0.075 3.925 5 C 0.128 3.872 6 N -0.536 5.536 7 C 0.061 3.939 8 C 0.058 3.942 9 N -0.516 5.516 10 C 0.044 3.956 11 C 0.453 3.547 12 O -0.558 6.558 13 N -0.593 5.593 14 C -0.303 4.303 15 H 0.119 0.881 16 C 0.040 3.960 17 N -0.883 5.883 18 Si 0.880 3.120 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.057 3.943 23 C 0.067 3.933 24 C -0.241 4.241 25 S 0.107 5.893 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 -25.462 12.572 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.229 4.229 3 N -0.183 5.183 4 C -0.056 4.056 5 C -0.002 4.002 6 N -0.261 5.261 7 C -0.067 4.067 8 C -0.070 4.070 9 N -0.241 5.241 10 C -0.088 4.088 11 C 0.239 3.761 12 O -0.440 6.440 13 N -0.233 5.233 14 C -0.431 4.431 15 H 0.137 0.863 16 C -0.162 4.162 17 N -0.523 5.523 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.195 1.195 22 C -0.071 4.071 23 C -0.061 4.061 24 C -0.381 4.381 25 S 0.361 5.639 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.202 0.798 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.205 -25.407 13.180 30.388 hybrid contribution 0.634 0.009 -1.510 1.638 sum -9.571 -25.398 11.671 29.544 Atomic orbital electron populations 1.20431 0.85135 1.03437 1.04637 1.27051 1.01769 0.90830 1.03286 1.66147 1.04549 1.31586 1.15977 1.20099 0.89807 0.94241 1.01471 1.20639 0.95659 0.93131 0.90807 1.62411 1.19842 1.31436 1.12448 1.22169 0.97908 0.89107 0.97475 1.22259 0.90535 1.01780 0.92397 1.61732 1.20165 1.28774 1.13397 1.21877 1.01073 0.95816 0.89988 1.19670 0.83942 0.87917 0.84563 1.90540 1.58053 1.64318 1.31039 1.42234 1.58022 1.15566 1.07455 1.19423 1.37461 0.88592 0.97669 0.86290 1.25038 0.97340 0.95908 0.97957 1.69625 1.41739 1.12921 1.27998 0.86671 0.78883 0.79784 0.84048 1.19642 1.20233 1.19535 1.22189 0.98285 0.90319 0.96347 1.22095 0.90263 1.00471 0.93286 1.26799 1.03083 0.95572 1.12597 1.83980 0.98158 1.13060 1.68740 0.90324 0.89383 0.89250 0.89076 0.92776 0.90365 0.93329 0.87892 0.94954 0.93484 0.89198 0.79756 0.91670 0.94598 0.90591 0.90842 0.93438 0.80478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.47 36.01 0.38 -0.05 16 2 C 0.05 0.44 7.39 -13.46 -0.10 0.34 16 3 N -0.47 -5.29 9.16 -8.06 -0.07 -5.36 16 4 C 0.08 0.81 4.79 -84.23 -0.40 0.40 16 5 C 0.13 1.40 5.73 -4.98 -0.03 1.37 16 6 N -0.54 -6.90 4.85 -235.91 -1.14 -8.04 16 7 C 0.06 0.86 5.58 -3.77 -0.02 0.84 16 8 C 0.06 0.97 5.27 -3.77 -0.02 0.95 16 9 N -0.52 -8.82 4.40 -235.91 -1.04 -9.86 16 10 C 0.04 0.77 5.45 -4.97 -0.03 0.75 16 11 C 0.45 10.48 7.35 -10.98 -0.08 10.40 16 12 O -0.56 -15.05 14.26 5.55 0.08 -14.97 16 13 N -0.59 -14.33 5.09 -10.96 -0.06 -14.38 16 14 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 15 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 16 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 17 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 18 Si 0.88 19.59 27.73 -169.99 -4.71 14.87 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 22 C 0.06 0.80 5.61 -3.77 -0.02 0.78 16 23 C 0.07 0.91 4.88 -3.77 -0.02 0.89 16 24 C -0.24 -2.14 11.11 29.12 0.32 -1.82 16 25 S 0.11 0.80 23.17 -107.50 -2.49 -1.69 16 26 H 0.08 0.28 8.12 -51.93 -0.42 -0.14 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.03 6.09 -51.93 -0.32 1.71 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.09 1.40 8.02 -51.93 -0.42 0.98 16 37 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 41 H 0.07 0.97 5.98 -51.93 -0.31 0.66 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -33.59 359.73 -9.83 -43.42 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.32 Total: 8.74 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.27 Total: 7.07 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.54 Total: -62.86 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.08 Total: -14.97 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.87 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.49 Total: -1.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.59 -9.83 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.874 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds