Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29023 * 124.91786 * 2 1 4 4 C 1.31783 * 117.12566 * 180.22973 * 3 2 1 5 5 C 1.50701 * 122.75147 * 179.75659 * 4 3 2 6 6 N 1.46900 * 109.46924 * 274.71084 * 5 4 3 7 7 C 1.46958 * 111.00076 * 169.99597 * 6 5 4 8 8 C 1.53050 * 109.36408 * 176.81070 * 7 6 5 9 9 N 1.46958 * 109.36489 * 58.40551 * 8 7 6 10 10 C 1.46900 * 111.00071 * 176.81020 * 9 8 7 11 11 C 1.50704 * 109.46955 * 293.63909 * 10 9 8 12 12 O 1.21292 * 120.00196 * 353.79397 * 11 10 9 13 13 N 1.34783 * 119.99931 * 173.80130 * 11 10 9 14 14 C 1.37096 * 119.99667 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00270 * 359.97438 * 14 13 11 16 16 C 1.38957 * 119.99330 * 179.97438 * 14 13 11 17 17 N 1.31417 * 119.99608 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00196 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46989 * 90.00083 * 18 16 14 20 20 H 1.48503 * 109.47253 * 209.99965 * 18 16 14 21 21 H 1.48496 * 109.47506 * 329.99935 * 18 16 14 22 22 C 1.46950 * 110.87851 * 300.67896 * 9 8 7 23 23 C 1.46958 * 111.00071 * 46.19988 * 6 5 4 24 24 C 1.33634 * 114.49896 * 359.48626 * 4 3 2 25 25 S 1.70984 * 124.91477 * 179.70539 * 2 1 3 26 26 H 1.09001 * 109.46843 * 180.32436 * 1 2 3 27 27 H 1.08997 * 109.46879 * 300.32312 * 1 2 3 28 28 H 1.08999 * 109.47534 * 60.32230 * 1 2 3 29 29 H 1.08995 * 109.47204 * 154.71578 * 5 4 3 30 30 H 1.08999 * 109.47157 * 34.70671 * 5 4 3 31 31 H 1.09001 * 109.48473 * 56.84671 * 7 6 5 32 32 H 1.09002 * 109.49015 * 296.78145 * 7 6 5 33 33 H 1.09007 * 109.48551 * 178.37011 * 8 7 6 34 34 H 1.09000 * 109.49180 * 298.43544 * 8 7 6 35 35 H 1.08994 * 109.47275 * 53.63640 * 10 9 8 36 36 H 1.08999 * 109.47336 * 173.63784 * 10 9 8 37 37 H 0.97002 * 119.99812 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99800 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.48776 * 299.35125 * 22 9 8 40 40 H 1.09000 * 109.49095 * 179.28906 * 22 9 8 41 41 H 1.08998 * 109.49037 * 303.15526 * 23 6 5 42 42 H 1.09000 * 109.48963 * 63.21841 * 23 6 5 43 43 H 1.08000 * 126.03712 * 180.25963 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 -0.0047 5 6 4.5308 2.0245 -0.0107 6 7 4.7573 2.4678 -1.3927 7 6 5.5159 3.7261 -1.4246 8 6 5.7990 4.1113 -2.8785 9 7 4.5276 4.2478 -3.6028 10 6 4.7541 4.6912 -4.9849 11 6 5.3077 6.0929 -4.9784 12 8 5.3898 6.7077 -3.9361 13 7 5.7115 6.6633 -6.1309 14 6 6.2146 7.9386 -6.1251 15 1 6.2870 8.4863 -5.1971 16 6 6.6314 8.5264 -7.3132 17 7 7.1132 9.7490 -7.3077 18 14 6.5067 7.5788 -8.9181 19 1 5.1848 7.8365 -9.5437 20 1 7.5848 8.0207 -9.8389 21 1 6.6516 6.1259 -8.6476 22 6 3.7690 2.9897 -3.5710 23 6 3.4859 2.6044 -2.1171 24 6 3.9354 -0.4006 0.0020 25 16 2.4856 -1.4021 0.0072 26 1 -0.3633 -1.0277 0.0058 27 1 -0.3633 0.5188 0.8871 28 1 -0.3634 0.5088 -0.8928 29 1 5.4747 1.6974 0.4252 30 1 4.1272 2.8509 0.5744 31 1 6.4584 3.5959 -0.8927 32 1 4.9339 4.5139 -0.9463 33 1 6.3365 5.0592 -2.9054 34 1 6.4041 3.3362 -3.3489 35 1 5.4652 4.0220 -5.4692 36 1 3.8108 4.6756 -5.5307 37 1 5.6461 6.1714 -6.9645 38 1 7.4044 10.1593 -8.1370 39 1 4.3510 2.2019 -4.0492 40 1 2.8265 3.1198 -4.1028 41 1 2.9484 1.6566 -2.0901 42 1 2.8808 3.3794 -1.6467 43 1 4.9545 -0.7581 0.0037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066492323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = 11.326959 kcal Electronic energy + Delta-G solvation = -24917.916314 eV Core-core repulsion = 21317.506854 eV Total energy + Delta-G solvation = -3600.409460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32617 -40.59954 -39.38255 -36.54040 -35.81279 -33.76058 -33.37482 -31.90123 -30.68753 -29.24537 -27.87646 -26.26180 -24.97821 -24.35580 -23.10878 -21.28046 -20.85116 -20.53069 -20.20660 -18.60941 -17.78714 -17.44193 -16.80618 -16.54952 -16.30688 -15.95236 -15.87692 -15.59996 -15.45769 -15.23213 -14.92534 -14.85306 -14.41808 -14.33111 -13.98959 -13.87470 -13.49398 -13.19337 -13.09490 -12.98397 -12.82752 -12.73530 -12.41191 -12.29254 -12.25843 -11.99973 -11.87529 -11.79930 -11.46207 -10.57886 -10.39193 -10.30233 -10.23078 -9.76918 -9.39941 -9.20478 -8.40741 -6.01276 -0.21658 0.45784 0.77398 1.30304 1.35693 1.44456 1.69466 1.96098 2.23311 2.58847 2.93762 3.14837 3.17614 3.20711 3.84741 3.86767 4.05118 4.08396 4.19328 4.26770 4.34357 4.37396 4.39628 4.44254 4.53529 4.55387 4.57186 4.63957 4.68459 4.80597 4.83462 4.89730 5.00894 5.04181 5.06801 5.24332 5.53306 5.80872 5.88663 5.94975 6.06225 6.18049 6.60730 6.81708 6.89116 7.40514 7.97913 8.76966 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.002269 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.907483 B =12337.956411 C =12619.147424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.036 3.964 3 N -0.503 5.503 4 C 0.052 3.948 5 C 0.129 3.871 6 N -0.530 5.530 7 C 0.069 3.931 8 C 0.062 3.938 9 N -0.540 5.540 10 C 0.056 3.944 11 C 0.452 3.548 12 O -0.605 6.605 13 N -0.592 5.592 14 C -0.326 4.326 15 H 0.055 0.945 16 C -0.016 4.016 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.232 1.232 22 C 0.061 3.939 23 C 0.077 3.923 24 C -0.244 4.244 25 S 0.154 5.846 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.022 0.978 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 -29.822 10.921 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.242 4.242 3 N -0.220 5.220 4 C -0.079 4.079 5 C -0.001 4.001 6 N -0.255 5.255 7 C -0.059 4.059 8 C -0.066 4.066 9 N -0.265 5.265 10 C -0.075 4.075 11 C 0.240 3.760 12 O -0.489 6.489 13 N -0.235 5.235 14 C -0.455 4.455 15 H 0.073 0.927 16 C -0.215 4.215 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.156 1.156 22 C -0.066 4.066 23 C -0.052 4.052 24 C -0.384 4.384 25 S 0.409 5.591 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.040 0.960 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.165 -29.808 11.547 33.860 hybrid contribution 0.893 1.363 -0.817 1.823 sum -10.272 -28.445 10.730 32.090 Atomic orbital electron populations 1.20570 0.83356 1.05041 1.04745 1.27563 1.03073 0.91111 1.02451 1.66148 1.05110 1.33193 1.17528 1.20044 0.89783 0.94664 1.03380 1.20673 0.96933 0.93070 0.89377 1.62443 1.19343 1.29992 1.13767 1.22051 0.98721 0.89165 0.95982 1.22108 0.90449 1.00017 0.94003 1.61673 1.20643 1.30981 1.13251 1.21809 1.02791 0.91842 0.91080 1.20842 0.81982 0.89811 0.83355 1.90529 1.59321 1.66186 1.32843 1.42048 1.58382 1.14222 1.08807 1.18985 1.39831 0.90630 0.96033 0.92699 1.26119 0.95826 0.96919 1.02617 1.69809 1.42683 1.15314 1.29771 0.85358 0.79348 0.79845 0.76924 1.18150 1.19996 1.15555 1.22242 0.98555 0.89025 0.96789 1.21980 0.90260 0.99901 0.93039 1.27080 1.04680 0.95383 1.11213 1.83795 0.96538 1.11371 1.67441 0.87973 0.89151 0.89194 0.87026 0.94349 0.88383 0.95783 0.91883 0.93723 0.90525 0.86193 0.77551 0.91174 0.93263 0.89113 0.90034 0.95973 0.78757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.47 71.24 0.75 0.01 16 2 C 0.04 0.57 7.39 88.52 0.65 1.23 16 3 N -0.50 -10.97 9.16 -179.40 -1.64 -12.61 16 4 C 0.05 1.06 4.79 41.52 0.20 1.26 16 5 C 0.13 2.74 5.73 85.56 0.49 3.23 16 6 N -0.53 -13.12 4.85 -900.28 -4.37 -17.49 16 7 C 0.07 1.95 5.58 86.31 0.48 2.43 16 8 C 0.06 2.06 5.27 86.31 0.45 2.52 16 9 N -0.54 -17.89 4.40 -900.29 -3.96 -21.86 16 10 C 0.06 1.83 5.45 85.56 0.47 2.30 16 11 C 0.45 21.07 7.35 87.66 0.64 21.72 16 12 O -0.61 -34.32 14.26 -3.07 -0.04 -34.36 16 13 N -0.59 -28.55 5.09 -306.97 -1.56 -30.11 16 14 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 15 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 16 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 17 N -0.93 -57.01 13.96 21.67 0.30 -56.70 16 18 Si 0.97 39.30 27.73 68.60 1.90 41.21 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.23 -7.98 6.52 99.48 0.65 -7.34 16 22 C 0.06 1.58 5.61 86.31 0.48 2.07 16 23 C 0.08 2.00 4.88 86.31 0.42 2.42 16 24 C -0.24 -3.77 11.11 66.77 0.74 -3.03 16 25 S 0.15 1.91 23.17 -56.49 -1.31 0.60 16 26 H 0.10 0.45 8.12 -2.39 -0.02 0.43 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 2.59 6.09 -2.38 -0.01 2.58 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 36 H 0.12 3.27 8.02 -2.39 -0.02 3.25 16 37 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 38 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 41 H 0.08 2.03 5.98 -2.39 -0.01 2.01 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -79.16 359.73 -3.15 -82.31 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.43 Total: 31.83 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 7.10 Total: 17.20 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -11.24 Total: -138.78 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.04 Total: -34.36 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.90 Total: 41.21 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.60 kcal Total: -79.16 -3.15 -82.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.633 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds