Wall clock time and date at job start Fri Apr 10 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48501 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99778 * 3 2 1 6 6 H 1.48497 * 109.47089 * 60.00030 * 3 2 1 7 7 C 1.37881 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.46510 * 119.99832 * 270.00151 * 10 9 7 12 12 C 1.50698 * 109.47000 * 285.95099 * 11 10 9 13 13 C 1.34511 * 125.78526 * 84.09890 * 12 11 10 14 14 C 1.41386 * 106.83760 * 179.97438 * 13 12 11 15 15 C 1.34512 * 106.83924 * 0.02562 * 14 13 12 16 16 O 1.34293 * 108.42058 * 359.73057 * 15 14 13 17 17 C 1.34771 * 120.00167 * 89.99966 * 10 9 7 18 18 O 1.21592 * 120.00121 * 5.25011 * 17 10 9 19 19 C 1.47578 * 119.99983 * 185.24730 * 17 10 9 20 20 C 1.40244 * 119.83304 * 127.63280 * 19 17 10 21 21 C 1.36202 * 120.38097 * 180.02562 * 20 19 17 22 22 C 1.39915 * 119.96050 * 359.97438 * 21 20 19 23 23 C 1.46252 * 133.84041 * 180.02562 * 22 21 20 24 24 C 1.34462 * 107.03227 * 179.22357 * 23 22 21 25 25 N 1.36568 * 109.97523 * 0.68160 * 24 23 22 26 26 H 0.97003 * 125.07483 * 179.35527 * 25 24 23 27 27 C 1.37826 * 109.85719 * 359.39111 * 25 24 23 28 28 C 1.38685 * 133.37431 * 180.02562 * 27 25 24 29 29 H 0.96997 * 119.99989 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46979 * 60.00657 * 9 7 2 31 31 H 1.08996 * 109.47430 * 300.00701 * 9 7 2 32 32 H 1.09003 * 109.46747 * 45.95159 * 11 10 9 33 33 H 1.08996 * 109.47087 * 165.95248 * 11 10 9 34 34 H 1.07996 * 126.58669 * 359.96596 * 13 12 11 35 35 H 1.07998 * 126.57845 * 179.97438 * 14 13 12 36 36 H 1.07999 * 125.78641 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.80635 * 0.02908 * 20 19 17 38 38 H 1.07999 * 120.01531 * 179.97438 * 21 20 19 39 39 H 1.07998 * 126.48179 * 359.94802 * 23 22 21 40 40 H 1.07997 * 125.01520 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.16052 * 359.96518 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2694 12 6 1.5840 -4.9911 -1.8996 13 6 0.5845 -4.5155 -2.6639 14 6 -0.2067 -5.6251 -3.0405 15 6 0.3565 -6.7122 -2.4834 16 8 1.4438 -6.3228 -1.7982 17 6 2.6408 -4.1250 1.1666 18 8 2.1750 -3.7284 2.2174 19 6 3.6856 -5.1672 1.1692 20 6 4.8343 -5.0016 1.9566 21 6 5.8058 -5.9562 1.9670 22 6 5.6599 -7.1101 1.1894 23 6 6.4859 -8.2977 0.9740 24 6 5.8173 -9.0930 0.1205 25 7 4.6385 -8.5046 -0.2393 26 1 3.9906 -8.8844 -0.8532 27 6 4.5073 -7.2903 0.3993 28 6 3.5259 -6.3104 0.3899 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.9563 -3.3572 -1.9412 33 1 3.5475 -4.8017 -1.0856 34 1 0.4181 -3.4840 -2.9373 35 1 -1.0935 -5.6037 -3.6566 36 1 -0.0021 -7.7267 -2.5758 37 1 4.9491 -4.1120 2.5582 38 1 6.6881 -5.8224 2.5753 39 1 7.4454 -8.5029 1.4252 40 1 6.1662 -10.0505 -0.2368 41 1 2.6402 -6.4352 -0.2155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069488939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:24 Heat of formation + Delta-G solvation = 53.650801 kcal Electronic energy + Delta-G solvation = -27081.569804 eV Core-core repulsion = 23315.258942 eV Total energy + Delta-G solvation = -3766.310863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38597 -41.22161 -39.19054 -36.37796 -35.25854 -32.82092 -32.79704 -31.85515 -30.14886 -29.42686 -29.20675 -27.23401 -25.46359 -23.69025 -22.84213 -21.69524 -21.45051 -20.72722 -20.43288 -19.00959 -17.80698 -17.38417 -16.82508 -16.30824 -15.96371 -15.69234 -15.36699 -14.77776 -14.44776 -14.35122 -14.28155 -13.85900 -13.76208 -13.35721 -13.13021 -12.67205 -12.63225 -12.53933 -12.47059 -12.15931 -11.72639 -11.56362 -11.37636 -11.17788 -10.94950 -10.81614 -10.60505 -10.19450 -9.76192 -9.68370 -9.62123 -9.08105 -8.44495 -8.29565 -8.18374 -7.82522 -7.69004 -6.05358 -4.10296 1.01265 1.64250 1.88804 2.61485 2.84325 3.02734 3.09087 3.30056 3.37495 3.40275 3.47042 3.86690 4.12925 4.44345 4.70362 4.82563 4.92726 4.98898 5.20400 5.22812 5.25659 5.29772 5.42219 5.43972 5.52792 5.60795 5.77315 5.91716 5.94583 6.01199 6.06673 6.22372 6.32512 6.49243 6.61591 6.70930 6.73813 6.74015 7.02763 7.16391 7.30734 7.43657 7.44765 7.48920 7.90975 8.20730 8.28203 8.85148 9.00564 9.54841 11.02854 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.004564 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.801220 B = 6133.765848 C = 7940.530203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.243 3.757 10 N -0.585 5.585 11 C 0.180 3.820 12 C -0.025 4.025 13 C -0.187 4.187 14 C -0.209 4.209 15 C -0.055 4.055 16 O -0.182 6.182 17 C 0.555 3.445 18 O -0.526 6.526 19 C -0.096 4.096 20 C -0.097 4.097 21 C -0.081 4.081 22 C -0.098 4.098 23 C -0.210 4.210 24 C 0.051 3.949 25 N -0.593 5.593 26 H 0.415 0.585 27 C 0.089 3.911 28 C -0.104 4.104 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.197 0.803 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -18.925 -5.684 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.125 3.875 10 N -0.316 5.316 11 C 0.055 3.945 12 C -0.076 4.076 13 C -0.206 4.206 14 C -0.228 4.228 15 C -0.123 4.123 16 O -0.079 6.079 17 C 0.342 3.658 18 O -0.403 6.403 19 C -0.101 4.101 20 C -0.116 4.116 21 C -0.099 4.099 22 C -0.103 4.103 23 C -0.236 4.236 24 C -0.076 4.076 25 N -0.196 5.196 26 H 0.252 0.748 27 C -0.018 4.018 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.214 0.786 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.186 0.814 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.489 -18.801 -5.034 21.234 hybrid contribution -0.259 0.745 -0.576 0.977 sum 8.230 -18.056 -5.610 20.621 Atomic orbital electron populations 1.69946 1.05996 1.26930 1.50277 1.24923 0.94856 0.99185 0.94993 0.86450 0.80079 0.83366 0.77594 1.19690 1.20990 1.20869 1.21470 0.93492 0.90474 1.51306 0.92163 1.19390 0.87484 0.81662 0.98999 1.48218 1.45826 1.34460 1.03116 1.20080 0.91667 0.95521 0.87186 1.23132 1.01746 0.80465 1.02231 1.21776 0.96026 1.00665 1.02183 1.21844 1.02850 0.92568 1.05532 1.23910 0.89110 1.00060 0.99178 1.83896 1.41135 1.23960 1.58931 1.18171 0.81948 0.81393 0.84329 1.90780 1.57715 1.60896 1.30899 1.19845 0.96399 0.95278 0.98559 1.20653 0.92560 0.99764 0.98658 1.20154 0.99071 0.92100 0.98590 1.19340 0.94854 0.96154 0.99937 1.21678 1.01477 0.94846 1.05554 1.21803 0.86812 0.99019 0.99932 1.41743 1.19678 1.16717 1.41454 0.74806 1.18050 0.97372 0.88162 0.98170 1.20500 0.98750 0.92460 1.00816 0.92752 0.94384 0.93584 0.87297 0.88625 0.82886 0.83711 0.78619 0.85125 0.85631 0.83738 0.81442 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 6.34 5.14 -5.19 -0.03 6.31 16 10 N -0.59 -12.74 2.49 -177.65 -0.44 -13.18 16 11 C 0.18 3.12 5.49 -5.19 -0.03 3.09 16 12 C -0.02 -0.41 6.38 -35.63 -0.23 -0.64 16 13 C -0.19 -3.05 9.87 -39.70 -0.39 -3.44 16 14 C -0.21 -2.85 10.91 -39.70 -0.43 -3.28 16 15 C -0.06 -0.68 12.09 29.42 0.36 -0.32 16 16 O -0.18 -2.65 8.19 5.75 0.05 -2.61 16 17 C 0.55 12.35 7.17 -12.45 -0.09 12.26 16 18 O -0.53 -13.87 16.61 5.28 0.09 -13.79 16 19 C -0.10 -1.74 4.89 -104.95 -0.51 -2.25 16 20 C -0.10 -1.57 9.66 -39.56 -0.38 -1.95 16 21 C -0.08 -1.11 10.03 -39.69 -0.40 -1.50 16 22 C -0.10 -1.32 6.37 -105.04 -0.67 -1.99 16 23 C -0.21 -2.20 11.08 -37.70 -0.42 -2.61 16 24 C 0.05 0.44 11.81 -16.78 -0.20 0.24 16 25 N -0.59 -5.95 6.07 -10.68 -0.06 -6.01 16 26 H 0.42 3.08 8.96 -40.82 -0.37 2.71 16 27 C 0.09 1.21 7.26 -84.00 -0.61 0.60 16 28 C -0.10 -1.63 7.43 -39.03 -0.29 -1.92 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.99 6.68 -51.93 -0.35 0.64 16 31 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 32 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 33 H 0.10 1.50 4.88 -51.93 -0.25 1.24 16 34 H 0.15 2.59 7.75 -52.49 -0.41 2.18 16 35 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.14 2.12 4.17 -52.48 -0.22 1.90 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -34.82 350.34 -8.60 -43.41 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.48 Total: 6.61 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -4.74 Total: -10.81 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.23 Total: -44.70 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.13 Total: -16.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.82 -8.60 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069488939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.063 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds