Wall clock time and date at job start Fri Apr 10 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48501 * 109.46976 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99778 * 3 2 1 6 6 H 1.48497 * 109.47089 * 60.00030 * 3 2 1 7 7 C 1.37881 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.46510 * 119.99832 * 270.00151 * 10 9 7 12 12 C 1.50698 * 109.47000 * 285.95099 * 11 10 9 13 13 C 1.34511 * 125.78526 * 84.09890 * 12 11 10 14 14 C 1.41386 * 106.83760 * 179.97438 * 13 12 11 15 15 C 1.34512 * 106.83924 * 0.02562 * 14 13 12 16 16 O 1.34293 * 108.42058 * 359.73057 * 15 14 13 17 17 C 1.34771 * 120.00167 * 89.99966 * 10 9 7 18 18 O 1.21592 * 120.00121 * 5.25011 * 17 10 9 19 19 C 1.47578 * 119.99983 * 185.24730 * 17 10 9 20 20 C 1.40244 * 119.83304 * 127.63280 * 19 17 10 21 21 C 1.36202 * 120.38097 * 180.02562 * 20 19 17 22 22 C 1.39915 * 119.96050 * 359.97438 * 21 20 19 23 23 C 1.46252 * 133.84041 * 180.02562 * 22 21 20 24 24 C 1.34462 * 107.03227 * 179.22357 * 23 22 21 25 25 N 1.36568 * 109.97523 * 0.68160 * 24 23 22 26 26 H 0.97003 * 125.07483 * 179.35527 * 25 24 23 27 27 C 1.37826 * 109.85719 * 359.39111 * 25 24 23 28 28 C 1.38685 * 133.37431 * 180.02562 * 27 25 24 29 29 H 0.96997 * 119.99989 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46979 * 60.00657 * 9 7 2 31 31 H 1.08996 * 109.47430 * 300.00701 * 9 7 2 32 32 H 1.09003 * 109.46747 * 45.95159 * 11 10 9 33 33 H 1.08996 * 109.47087 * 165.95248 * 11 10 9 34 34 H 1.07996 * 126.58669 * 359.96596 * 13 12 11 35 35 H 1.07998 * 126.57845 * 179.97438 * 14 13 12 36 36 H 1.07999 * 125.78641 * 180.02562 * 15 14 13 37 37 H 1.08001 * 119.80635 * 0.02908 * 20 19 17 38 38 H 1.07999 * 120.01531 * 179.97438 * 21 20 19 39 39 H 1.07998 * 126.48179 * 359.94802 * 23 22 21 40 40 H 1.07997 * 125.01520 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.16052 * 359.96518 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2694 12 6 1.5840 -4.9911 -1.8996 13 6 0.5845 -4.5155 -2.6639 14 6 -0.2067 -5.6251 -3.0405 15 6 0.3565 -6.7122 -2.4834 16 8 1.4438 -6.3228 -1.7982 17 6 2.6408 -4.1250 1.1666 18 8 2.1750 -3.7284 2.2174 19 6 3.6856 -5.1672 1.1692 20 6 4.8343 -5.0016 1.9566 21 6 5.8058 -5.9562 1.9670 22 6 5.6599 -7.1101 1.1894 23 6 6.4859 -8.2977 0.9740 24 6 5.8173 -9.0930 0.1205 25 7 4.6385 -8.5046 -0.2393 26 1 3.9906 -8.8844 -0.8532 27 6 4.5073 -7.2903 0.3993 28 6 3.5259 -6.3104 0.3899 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8896 32 1 2.9563 -3.3572 -1.9412 33 1 3.5475 -4.8017 -1.0856 34 1 0.4181 -3.4840 -2.9373 35 1 -1.0935 -5.6037 -3.6566 36 1 -0.0021 -7.7267 -2.5758 37 1 4.9491 -4.1120 2.5582 38 1 6.6881 -5.8224 2.5753 39 1 7.4454 -8.5029 1.4252 40 1 6.1662 -10.0505 -0.2368 41 1 2.6402 -6.4352 -0.2155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069488939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:23 Heat of formation + Delta-G solvation = 31.812684 kcal Electronic energy + Delta-G solvation = -27082.516776 eV Core-core repulsion = 23315.258942 eV Total energy + Delta-G solvation = -3767.257834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.55094 -42.20710 -40.79078 -37.58128 -37.03120 -34.88969 -33.96281 -32.99266 -31.57210 -30.59718 -30.33193 -28.96238 -26.89594 -25.46216 -24.03019 -23.04899 -22.67594 -21.65460 -21.56294 -20.43864 -18.93369 -18.84145 -18.34766 -18.02440 -17.27928 -17.10032 -16.74934 -16.33273 -16.17342 -15.52997 -15.34081 -15.04446 -15.00121 -14.68738 -14.28539 -14.15422 -14.02193 -13.82919 -13.76751 -13.60674 -13.30484 -12.99085 -12.80947 -12.77476 -12.64668 -12.40446 -12.25046 -12.00062 -11.75656 -10.93923 -10.83966 -10.66515 -10.62584 -9.75244 -9.45513 -9.23712 -8.64148 -8.23990 -6.38598 -0.11236 0.49600 0.70498 1.36768 1.39210 1.51097 1.58793 1.67357 1.87748 2.02049 2.18160 2.36869 2.45837 2.87299 3.06416 3.55263 3.74763 3.81821 3.99232 3.99899 4.12278 4.21980 4.30819 4.37128 4.41541 4.52709 4.70051 4.72184 4.88125 4.96253 5.00923 5.03240 5.05759 5.17921 5.22016 5.35338 5.46491 5.53963 5.59511 5.70062 5.75416 5.81343 6.02385 6.13221 6.17450 6.52268 6.69725 6.72671 7.16332 7.34314 8.84224 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.011868 B = 0.004564 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.801220 B = 6133.765848 C = 7940.530203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.262 3.738 10 N -0.588 5.588 11 C 0.183 3.817 12 C -0.046 4.046 13 C -0.203 4.203 14 C -0.227 4.227 15 C -0.031 4.031 16 O -0.182 6.182 17 C 0.549 3.451 18 O -0.586 6.586 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.073 4.073 22 C -0.106 4.106 23 C -0.229 4.229 24 C 0.080 3.920 25 N -0.583 5.583 26 H 0.430 0.570 27 C 0.074 3.926 28 C -0.096 4.096 29 H 0.268 0.732 30 H 0.032 0.968 31 H -0.004 1.004 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.168 0.832 36 H 0.249 0.751 37 H 0.117 0.883 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.219 0.781 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -22.340 -7.332 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.141 3.859 10 N -0.317 5.317 11 C 0.060 3.940 12 C -0.096 4.096 13 C -0.223 4.223 14 C -0.246 4.246 15 C -0.098 4.098 16 O -0.079 6.079 17 C 0.339 3.661 18 O -0.467 6.467 19 C -0.130 4.130 20 C -0.137 4.137 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.253 4.253 24 C -0.047 4.047 25 N -0.186 5.186 26 H 0.269 0.731 27 C -0.033 4.033 28 C -0.117 4.117 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.186 0.814 36 H 0.265 0.735 37 H 0.135 0.865 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.235 0.765 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.716 -22.257 -6.741 25.605 hybrid contribution -0.947 1.564 -0.132 1.833 sum 9.768 -20.693 -6.873 23.893 Atomic orbital electron populations 1.70066 1.07589 1.28145 1.50769 1.25840 0.95770 1.02963 0.94227 0.85351 0.78861 0.78524 0.77995 1.18971 1.19333 1.20728 1.21708 0.93408 0.91601 1.51643 0.92542 1.18827 0.87778 0.83077 0.96168 1.48161 1.44959 1.33534 1.05068 1.20142 0.92807 0.95966 0.85080 1.22718 1.02026 0.81484 1.03396 1.21894 0.96904 1.00915 1.02616 1.22136 1.03798 0.91907 1.06790 1.24898 0.86999 1.01741 0.96137 1.83889 1.42122 1.22680 1.59238 1.18935 0.82078 0.81704 0.83374 1.90716 1.59809 1.63333 1.32820 1.19446 0.96196 0.95427 1.01964 1.20616 0.93249 1.00568 0.99226 1.20371 0.98902 0.91447 0.98441 1.19803 0.95440 0.96823 0.99059 1.22045 1.02660 0.93772 1.06826 1.22642 0.84908 0.99760 0.97395 1.41867 1.20571 1.15298 1.40881 0.73099 1.18002 0.96964 0.89267 0.99101 1.20342 0.99184 0.92183 0.99968 0.92356 0.94968 0.98563 0.87417 0.86763 0.84637 0.81449 0.73547 0.86525 0.82926 0.81310 0.76453 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.66 5.46 84.66 0.46 1.12 16 3 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.55 -32.17 9.39 25.60 0.24 -31.93 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.26 14.80 5.14 85.63 0.44 15.24 16 10 N -0.59 -27.60 2.49 -834.21 -2.08 -29.67 16 11 C 0.18 6.68 5.49 85.63 0.47 7.15 16 12 C -0.05 -1.53 6.38 24.83 0.16 -1.38 16 13 C -0.20 -6.85 9.87 22.19 0.22 -6.63 16 14 C -0.23 -5.93 10.91 22.19 0.24 -5.69 16 15 C -0.03 -0.67 12.09 66.97 0.81 0.14 16 16 O -0.18 -5.08 8.19 -2.33 -0.02 -5.10 16 17 C 0.55 26.51 7.17 86.71 0.62 27.13 16 18 O -0.59 -33.86 16.61 -4.01 -0.07 -33.92 16 19 C -0.13 -4.79 4.89 -20.08 -0.10 -4.88 16 20 C -0.12 -3.97 9.66 22.28 0.22 -3.76 16 21 C -0.07 -1.95 10.03 22.20 0.22 -1.73 16 22 C -0.11 -2.60 6.37 -20.14 -0.13 -2.73 16 23 C -0.23 -3.74 11.08 23.49 0.26 -3.48 16 24 C 0.08 0.93 11.81 83.09 0.98 1.91 16 25 N -0.58 -9.20 6.07 -187.70 -1.14 -10.34 16 26 H 0.43 4.41 8.96 -92.71 -0.83 3.57 16 27 C 0.07 1.86 7.26 38.96 0.28 2.15 16 28 C -0.10 -2.99 7.43 22.63 0.17 -2.82 16 29 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.03 1.82 6.68 -2.39 -0.02 1.81 16 31 H 0.00 -0.25 7.35 -2.39 -0.02 -0.26 16 32 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 33 H 0.11 3.70 4.88 -2.39 -0.01 3.69 16 34 H 0.14 4.95 7.75 -2.91 -0.02 4.93 16 35 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.25 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.22 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.14 4.17 4.17 -2.91 -0.01 4.15 16 Total: -1.00 -83.01 350.34 4.84 -78.18 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.26 Total: 19.97 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.57 Total: -10.19 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -2.93 Total: -96.47 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.09 Total: -39.02 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -83.01 4.84 -78.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069488939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.993 kcal (2) G-P(sol) polarization free energy of solvation -83.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds