Wall clock time and date at job start Fri Apr 10 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37963 * 119.57391 * 2 1 4 4 C 1.39411 * 119.06370 * 179.97438 * 3 2 1 5 5 N 1.39414 * 120.86022 * 179.97438 * 4 3 2 6 6 C 1.34786 * 120.00305 * 325.10421 * 5 4 3 7 7 O 1.21727 * 119.99400 * 4.54726 * 6 5 4 8 8 C 1.46191 * 119.99993 * 184.55102 * 6 5 4 9 9 C 1.35057 * 119.99637 * 179.97438 * 8 6 5 10 10 C 1.46953 * 119.99753 * 179.97438 * 9 8 6 11 11 C 1.40025 * 120.10230 * 359.73231 * 10 9 8 12 12 C 1.37603 * 119.89491 * 179.76354 * 11 10 9 13 13 C 1.39173 * 120.10364 * 0.50677 * 12 11 10 14 14 O 1.35561 * 119.89987 * 179.76192 * 13 12 11 15 15 C 1.34782 * 117.00099 * 185.36182 * 14 13 12 16 16 H 1.07998 * 120.00070 * 354.96293 * 15 14 13 17 17 C 1.38721 * 119.99973 * 174.96034 * 15 14 13 18 18 N 1.31509 * 119.99963 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00175 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47147 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47302 * 119.99890 * 19 17 15 22 22 H 1.48496 * 109.47578 * 240.00164 * 19 17 15 23 23 C 1.39183 * 120.20083 * 359.74420 * 13 12 11 24 24 C 1.37590 * 120.10392 * 359.97438 * 23 13 12 25 25 C 1.39453 * 118.27724 * 0.02562 * 4 3 2 26 26 C 1.37913 * 119.07064 * 359.97438 * 25 4 3 27 27 N 1.31960 * 119.58443 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47487 * 269.99833 * 1 2 3 29 29 H 1.09001 * 109.47616 * 30.00380 * 1 2 3 30 30 H 1.08997 * 109.46889 * 150.00478 * 1 2 3 31 31 H 1.07996 * 120.46920 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00502 * 145.10024 * 5 4 3 33 33 H 1.07996 * 120.00430 * 359.97438 * 8 6 5 34 34 H 1.08001 * 120.00382 * 0.02562 * 9 8 6 35 35 H 1.08001 * 120.05183 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.94543 * 180.24895 * 12 11 10 37 37 H 0.97003 * 119.99831 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.94800 * 179.97438 * 23 13 12 39 39 H 1.08010 * 120.04990 * 180.02562 * 24 23 13 40 40 H 1.07998 * 120.46007 * 179.97438 * 25 4 3 41 41 H 1.08002 * 119.57804 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1999 0.0000 4 6 3.5820 1.1875 0.0005 5 7 4.3077 2.3778 0.0000 6 6 3.8414 3.4512 -0.6686 7 8 2.7484 3.4079 -1.2026 8 6 4.6484 4.6673 -0.7526 9 6 4.1813 5.7427 -1.4231 10 6 4.9922 6.9653 -1.5071 11 6 6.2470 7.0197 -0.8880 12 6 7.0049 8.1650 -0.9735 13 6 6.5215 9.2719 -1.6649 14 8 7.2696 10.3998 -1.7423 15 6 6.7012 11.4719 -2.3290 16 1 5.7255 11.3847 -2.7837 17 6 7.3695 12.6874 -2.3487 18 7 8.5578 12.7934 -1.7954 19 14 6.5821 14.1731 -3.1624 20 1 5.2536 13.7934 -3.7066 21 1 6.4147 15.2558 -2.1599 22 1 7.4517 14.6515 -4.2670 23 6 5.2726 9.2243 -2.2773 24 6 4.5102 8.0813 -2.2021 25 6 4.2316 -0.0465 0.0005 26 6 3.4772 -1.2010 0.0005 27 7 2.1585 -1.1476 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6486 2.1356 0.0004 32 1 5.1483 2.4337 0.4809 33 1 5.6180 4.7059 -0.2786 34 1 3.2115 5.7043 -1.8968 35 1 6.6209 6.1628 -0.3472 36 1 7.9745 8.2064 -0.4997 37 1 9.0252 13.6433 -1.8095 38 1 4.9013 10.0858 -2.8124 39 1 3.5413 8.0452 -2.6780 40 1 5.3104 -0.0972 0.0005 41 1 3.9719 -2.1610 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072281118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:28 Heat of formation + Delta-G solvation = 12.148521 kcal Electronic energy + Delta-G solvation = -24376.706197 eV Core-core repulsion = 20608.595661 eV Total energy + Delta-G solvation = -3768.110537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99313 -39.47237 -39.16826 -37.02192 -35.50735 -33.38582 -32.91676 -32.42457 -31.05745 -30.51277 -28.34075 -27.81816 -25.81910 -24.55589 -23.25627 -22.33884 -21.86035 -20.84214 -19.59605 -18.36647 -17.66595 -17.42658 -17.05732 -16.32750 -16.05138 -15.27915 -14.98241 -14.81807 -14.65298 -14.44854 -14.39324 -14.09976 -13.91225 -13.53137 -13.47193 -13.13845 -12.74460 -12.69106 -12.45739 -12.11187 -12.03718 -11.87576 -11.81805 -11.21091 -11.18337 -11.03772 -10.75496 -10.58847 -10.26920 -9.73773 -9.57915 -9.55611 -9.13920 -8.98542 -8.82701 -8.47013 -7.21858 -6.73000 -4.27252 0.73045 0.93206 1.15756 2.05846 2.41128 2.82749 2.98344 3.00062 3.06026 3.32283 3.62068 3.75938 4.11415 4.41854 4.47660 4.72737 4.82198 4.84479 4.94064 4.95483 5.10739 5.14492 5.27648 5.37998 5.43292 5.44348 5.56438 5.56577 5.64508 5.83018 5.86111 5.92672 6.01093 6.14770 6.32215 6.36956 6.49612 6.60205 6.69512 6.83144 7.03931 7.12073 7.16966 7.22294 7.55056 7.72376 7.82155 7.99334 8.71673 9.37673 10.43345 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.040078 B = 0.001732 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.470037 B =16163.485614 C =16760.186240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.141 3.859 3 C -0.176 4.176 4 C 0.200 3.800 5 N -0.674 5.674 6 C 0.558 3.442 7 O -0.536 6.536 8 C -0.293 4.293 9 C 0.053 3.947 10 C -0.206 4.206 11 C -0.040 4.040 12 C -0.200 4.200 13 C 0.168 3.832 14 O -0.159 6.159 15 C -0.393 4.393 16 H 0.099 0.901 17 C 0.042 3.958 18 N -0.849 5.849 19 Si 0.946 3.054 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.243 4.243 24 C -0.031 4.031 25 C -0.213 4.213 26 C 0.119 3.881 27 N -0.503 5.503 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.415 0.585 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.275 0.725 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 -19.281 4.027 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.004 3.996 3 C -0.198 4.198 4 C 0.096 3.904 5 N -0.318 5.318 6 C 0.353 3.647 7 O -0.414 6.414 8 C -0.314 4.314 9 C 0.033 3.967 10 C -0.207 4.207 11 C -0.058 4.058 12 C -0.219 4.219 13 C 0.111 3.889 14 O -0.060 6.060 15 C -0.468 4.468 16 H 0.116 0.884 17 C -0.165 4.165 18 N -0.481 5.481 19 Si 0.770 3.230 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.262 4.262 24 C -0.050 4.050 25 C -0.235 4.235 26 C -0.038 4.038 27 N -0.215 5.215 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.908 -19.707 3.731 21.946 hybrid contribution 0.827 1.580 -0.160 1.791 sum -8.080 -18.127 3.571 20.166 Atomic orbital electron populations 1.20713 0.88680 1.03610 1.03058 1.21196 0.97106 0.87720 0.93593 1.22124 0.93162 1.00596 1.03926 1.18028 0.91464 0.86010 0.94870 1.43407 1.25675 1.10137 1.52613 1.18608 0.86094 0.83257 0.76771 1.90787 1.21264 1.82885 1.46475 1.22261 1.02688 0.93708 1.12753 1.22336 0.96379 0.90143 0.87794 1.18422 0.97249 0.94708 1.10280 1.20880 0.92758 0.96235 0.95952 1.20154 1.02178 0.92856 1.06741 1.19623 0.89680 0.87935 0.91639 1.83898 1.38634 1.16853 1.66596 1.21558 1.03915 0.86033 1.35314 0.88370 1.25425 0.95806 0.98412 0.96849 1.70021 1.11987 1.26603 1.39511 0.85564 0.79106 0.79586 0.78761 1.18810 1.19844 1.19850 1.21107 0.96712 0.99993 1.08408 1.20998 0.97771 0.91673 0.94519 1.21922 1.01527 0.92022 1.08057 1.22494 0.89222 0.97792 0.94289 1.67519 1.09951 1.29356 1.14660 0.90396 0.90485 0.90439 0.83229 0.74895 0.85473 0.85780 0.86379 0.86053 0.91530 0.85034 0.86733 0.84569 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.17 36.01 0.37 -0.51 16 2 C 0.14 1.59 6.78 -82.64 -0.56 1.03 16 3 C -0.18 -2.12 8.40 -39.25 -0.33 -2.45 16 4 C 0.20 2.21 6.34 -83.52 -0.53 1.68 16 5 N -0.67 -6.82 5.34 -11.02 -0.06 -6.88 16 6 C 0.56 7.23 7.59 -13.06 -0.10 7.13 16 7 O -0.54 -8.55 13.72 5.17 0.07 -8.48 16 8 C -0.29 -3.62 9.41 -37.52 -0.35 -3.98 16 9 C 0.05 0.74 9.45 -37.18 -0.35 0.39 16 10 C -0.21 -3.30 5.87 -105.03 -0.62 -3.91 16 11 C -0.04 -0.64 9.40 -39.14 -0.37 -1.01 16 12 C -0.20 -3.83 9.97 -39.47 -0.39 -4.23 16 13 C 0.17 3.74 6.66 -38.88 -0.26 3.48 16 14 O -0.16 -4.21 9.74 0.76 0.01 -4.20 16 15 C -0.39 -10.18 9.48 30.91 0.29 -9.88 16 16 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.85 -23.25 13.67 55.48 0.76 -22.50 16 19 Si 0.95 19.06 29.55 -169.99 -5.02 14.04 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.24 -4.84 9.14 -39.47 -0.36 -5.20 16 24 C -0.03 -0.53 9.78 -39.15 -0.38 -0.91 16 25 C -0.21 -1.91 10.06 -39.25 -0.39 -2.30 16 26 C 0.12 1.11 11.17 -17.61 -0.20 0.92 16 27 N -0.50 -5.78 10.27 -9.56 -0.10 -5.88 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.15 1.95 6.32 -52.49 -0.33 1.62 16 32 H 0.41 2.83 8.80 -40.82 -0.36 2.47 16 33 H 0.13 1.31 6.07 -52.49 -0.32 0.99 16 34 H 0.12 1.71 7.52 -52.49 -0.39 1.32 16 35 H 0.12 1.51 6.16 -52.49 -0.32 1.18 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.13 2.60 5.61 -52.48 -0.29 2.31 16 39 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -31.10 359.34 -7.95 -39.04 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.38 Total: 8.21 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -4.63 Total: -18.78 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.60 Total: -35.25 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.10 -7.95 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072281118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.193 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds