Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37963 * 119.57391 * 2 1 4 4 C 1.39411 * 119.06370 * 179.97438 * 3 2 1 5 5 N 1.39414 * 120.86022 * 179.97438 * 4 3 2 6 6 C 1.34786 * 120.00305 * 325.10421 * 5 4 3 7 7 O 1.21727 * 119.99400 * 4.54726 * 6 5 4 8 8 C 1.46191 * 119.99993 * 184.55102 * 6 5 4 9 9 C 1.35057 * 119.99637 * 179.97438 * 8 6 5 10 10 C 1.46953 * 119.99753 * 179.97438 * 9 8 6 11 11 C 1.40025 * 120.10230 * 359.73231 * 10 9 8 12 12 C 1.37603 * 119.89491 * 179.76354 * 11 10 9 13 13 C 1.39173 * 120.10364 * 0.50677 * 12 11 10 14 14 O 1.35561 * 119.89987 * 179.76192 * 13 12 11 15 15 C 1.34782 * 117.00099 * 185.36182 * 14 13 12 16 16 H 1.07998 * 120.00070 * 354.96293 * 15 14 13 17 17 C 1.38721 * 119.99973 * 174.96034 * 15 14 13 18 18 N 1.31509 * 119.99963 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00175 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47147 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47302 * 119.99890 * 19 17 15 22 22 H 1.48496 * 109.47578 * 240.00164 * 19 17 15 23 23 C 1.39183 * 120.20083 * 359.74420 * 13 12 11 24 24 C 1.37590 * 120.10392 * 359.97438 * 23 13 12 25 25 C 1.39453 * 118.27724 * 0.02562 * 4 3 2 26 26 C 1.37913 * 119.07064 * 359.97438 * 25 4 3 27 27 N 1.31960 * 119.58443 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47487 * 269.99833 * 1 2 3 29 29 H 1.09001 * 109.47616 * 30.00380 * 1 2 3 30 30 H 1.08997 * 109.46889 * 150.00478 * 1 2 3 31 31 H 1.07996 * 120.46920 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00502 * 145.10024 * 5 4 3 33 33 H 1.07996 * 120.00430 * 359.97438 * 8 6 5 34 34 H 1.08001 * 120.00382 * 0.02562 * 9 8 6 35 35 H 1.08001 * 120.05183 * 359.97438 * 11 10 9 36 36 H 1.07997 * 119.94543 * 180.24895 * 12 11 10 37 37 H 0.97003 * 119.99831 * 179.97438 * 18 17 15 38 38 H 1.08003 * 119.94800 * 179.97438 * 23 13 12 39 39 H 1.08010 * 120.04990 * 180.02562 * 24 23 13 40 40 H 1.07998 * 120.46007 * 179.97438 * 25 4 3 41 41 H 1.08002 * 119.57804 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1999 0.0000 4 6 3.5820 1.1875 0.0005 5 7 4.3077 2.3778 0.0000 6 6 3.8414 3.4512 -0.6686 7 8 2.7484 3.4079 -1.2026 8 6 4.6484 4.6673 -0.7526 9 6 4.1813 5.7427 -1.4231 10 6 4.9922 6.9653 -1.5071 11 6 6.2470 7.0197 -0.8880 12 6 7.0049 8.1650 -0.9735 13 6 6.5215 9.2719 -1.6649 14 8 7.2696 10.3998 -1.7423 15 6 6.7012 11.4719 -2.3290 16 1 5.7255 11.3847 -2.7837 17 6 7.3695 12.6874 -2.3487 18 7 8.5578 12.7934 -1.7954 19 14 6.5821 14.1731 -3.1624 20 1 5.2536 13.7934 -3.7066 21 1 6.4147 15.2558 -2.1599 22 1 7.4517 14.6515 -4.2670 23 6 5.2726 9.2243 -2.2773 24 6 4.5102 8.0813 -2.2021 25 6 4.2316 -0.0465 0.0005 26 6 3.4772 -1.2010 0.0005 27 7 2.1585 -1.1476 0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6486 2.1356 0.0004 32 1 5.1483 2.4337 0.4809 33 1 5.6180 4.7059 -0.2786 34 1 3.2115 5.7043 -1.8968 35 1 6.6209 6.1628 -0.3472 36 1 7.9745 8.2064 -0.4997 37 1 9.0252 13.6433 -1.8095 38 1 4.9013 10.0858 -2.8124 39 1 3.5413 8.0452 -2.6780 40 1 5.3104 -0.0972 0.0005 41 1 3.9719 -2.1610 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072281118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = -7.004392 kcal Electronic energy + Delta-G solvation = -24377.536730 eV Core-core repulsion = 20608.595661 eV Total energy + Delta-G solvation = -3768.941069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87255 -40.86893 -40.28471 -38.53670 -36.45742 -34.79941 -34.06516 -33.64812 -32.03199 -31.92340 -29.66934 -28.55277 -27.54601 -25.64477 -24.24539 -23.73729 -22.91770 -21.94469 -20.83690 -19.85514 -18.94276 -18.56610 -18.29299 -17.19904 -16.86571 -16.51261 -16.48790 -16.04070 -15.93604 -15.62582 -15.49604 -15.29460 -15.21916 -14.76151 -14.63704 -14.23246 -14.12659 -13.62411 -13.45768 -13.33078 -13.20515 -13.11077 -12.85827 -12.74511 -12.59699 -12.23368 -12.11283 -11.91410 -11.28914 -11.22198 -11.15351 -10.61035 -10.40923 -9.90359 -9.90248 -9.71711 -8.71102 -8.53770 -6.19680 -0.39132 0.15266 0.24615 0.57893 1.10006 1.35600 1.44140 1.53251 1.94292 2.14046 2.22280 2.81747 2.85650 3.16182 3.40986 3.43441 3.59520 3.85280 3.92593 4.02674 4.07278 4.20626 4.23587 4.30706 4.40148 4.46405 4.60475 4.63502 4.75391 4.78511 4.91613 4.93097 4.98947 5.05293 5.17598 5.18267 5.23535 5.30687 5.37471 5.55736 5.62834 5.77540 5.81151 5.96204 6.09068 6.33700 6.90887 7.02361 7.06082 7.67626 8.68367 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.040078 B = 0.001732 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.470037 B =16163.485614 C =16760.186240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.128 3.872 3 C -0.195 4.195 4 C 0.182 3.818 5 N -0.656 5.656 6 C 0.554 3.446 7 O -0.566 6.566 8 C -0.250 4.250 9 C 0.029 3.971 10 C -0.175 4.175 11 C -0.034 4.034 12 C -0.208 4.208 13 C 0.131 3.869 14 O -0.219 6.219 15 C -0.416 4.416 16 H 0.106 0.894 17 C -0.018 4.018 18 N -0.913 5.913 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.251 4.251 24 C -0.038 4.038 25 C -0.201 4.201 26 C 0.114 3.886 27 N -0.523 5.523 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.433 0.567 33 H 0.159 0.841 34 H 0.127 0.873 35 H 0.163 0.837 36 H 0.123 0.877 37 H 0.275 0.725 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.254 -22.995 4.521 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.009 4.009 3 C -0.218 4.218 4 C 0.078 3.922 5 N -0.302 5.302 6 C 0.348 3.652 7 O -0.446 6.446 8 C -0.271 4.271 9 C 0.010 3.990 10 C -0.175 4.175 11 C -0.052 4.052 12 C -0.227 4.227 13 C 0.079 3.921 14 O -0.124 6.124 15 C -0.492 4.492 16 H 0.123 0.877 17 C -0.217 4.217 18 N -0.549 5.549 19 Si 0.838 3.162 20 H -0.174 1.174 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.270 4.270 24 C -0.056 4.056 25 C -0.223 4.223 26 C -0.043 4.043 27 N -0.235 5.235 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.273 0.727 33 H 0.176 0.824 34 H 0.145 0.855 35 H 0.181 0.819 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.047 -23.510 4.248 25.918 hybrid contribution 0.925 1.964 -0.164 2.177 sum -9.122 -21.547 4.084 23.752 Atomic orbital electron populations 1.20757 0.87406 1.03856 1.03916 1.21519 0.98267 0.87583 0.93547 1.22108 0.94037 1.00248 1.05382 1.18247 0.91341 0.86934 0.95682 1.43200 1.26042 1.09203 1.51726 1.18742 0.85694 0.84009 0.76793 1.90802 1.22656 1.83458 1.47711 1.22597 1.02929 0.92339 1.09189 1.22221 0.96831 0.89840 0.90150 1.18748 0.96810 0.94833 1.07147 1.21314 0.92151 0.96337 0.95387 1.20439 1.02836 0.93085 1.06385 1.20219 0.90852 0.87958 0.93073 1.83882 1.40415 1.18159 1.69918 1.21940 1.04510 0.86768 1.35973 0.87654 1.26604 0.96310 1.01275 0.97520 1.70151 1.14164 1.27393 1.43226 0.84527 0.78553 0.75452 0.77714 1.17402 1.19342 1.19327 1.21205 0.96437 1.01030 1.08329 1.21332 0.98705 0.90860 0.94667 1.22238 1.03155 0.90775 1.06170 1.23120 0.88721 0.99449 0.92986 1.67584 1.11269 1.29399 1.15285 0.89199 0.90282 0.90095 0.84821 0.72735 0.82357 0.85469 0.81945 0.85875 0.91575 0.85833 0.83743 0.81252 0.79383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.17 71.24 0.72 -0.89 16 2 C 0.13 2.70 6.78 42.47 0.29 2.98 16 3 C -0.20 -4.41 8.40 22.49 0.19 -4.22 16 4 C 0.18 3.44 6.34 38.51 0.24 3.68 16 5 N -0.66 -10.52 5.34 -306.99 -1.64 -12.16 16 6 C 0.55 12.19 7.59 86.31 0.66 12.85 16 7 O -0.57 -16.67 13.72 -4.43 -0.06 -16.73 16 8 C -0.25 -4.88 9.41 23.60 0.22 -4.66 16 9 C 0.03 0.70 9.45 23.82 0.23 0.92 16 10 C -0.17 -5.01 5.87 -20.13 -0.12 -5.13 16 11 C -0.03 -0.99 9.40 22.55 0.21 -0.78 16 12 C -0.21 -7.92 9.97 22.34 0.22 -7.70 16 13 C 0.13 6.07 6.66 22.72 0.15 6.22 16 14 O -0.22 -12.42 9.74 -20.18 -0.20 -12.62 16 15 C -0.42 -23.03 9.48 67.94 0.64 -22.38 16 16 H 0.11 5.33 5.18 -2.91 -0.02 5.31 16 17 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 18 N -0.91 -53.61 13.67 21.62 0.30 -53.32 16 19 Si 1.02 40.91 29.55 68.60 2.03 42.93 16 20 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.25 -10.17 9.14 22.34 0.20 -9.96 16 24 C -0.04 -1.21 9.78 22.55 0.22 -0.99 16 25 C -0.20 -2.79 10.06 22.49 0.23 -2.57 16 26 C 0.11 1.73 11.17 84.59 0.95 2.68 16 27 N -0.52 -10.87 10.27 -184.16 -1.89 -12.76 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.13 3.40 6.32 -2.91 -0.02 3.38 16 32 H 0.43 3.61 8.80 -92.71 -0.82 2.79 16 33 H 0.16 2.12 6.07 -2.91 -0.02 2.10 16 34 H 0.13 3.07 7.52 -2.91 -0.02 3.04 16 35 H 0.16 3.19 6.16 -2.91 -0.02 3.17 16 36 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.12 5.10 5.61 -2.91 -0.02 5.09 16 39 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 40 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -74.39 359.34 4.53 -69.86 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.27 Total: 25.25 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.72 Total: -30.46 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -3.23 Total: -78.23 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.26 Total: -29.35 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -74.39 4.53 -69.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072281118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds