Wall clock time and date at job start Fri Apr 10 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00260 * 2 1 4 4 O 1.20822 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99804 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46692 * 183.82718 * 5 3 2 7 7 C 1.36931 * 120.00328 * 90.83792 * 6 5 3 8 8 H 1.08004 * 120.00293 * 168.80472 * 7 6 5 9 9 C 1.38815 * 119.99636 * 348.80790 * 7 6 5 10 10 N 1.31610 * 120.00219 * 327.87806 * 9 7 6 11 11 Si 1.86805 * 119.99820 * 147.88619 * 9 7 6 12 12 H 1.48504 * 109.47186 * 94.98604 * 11 9 7 13 13 H 1.48502 * 109.47007 * 214.98450 * 11 9 7 14 14 H 1.48500 * 109.46996 * 334.98654 * 11 9 7 15 15 C 1.46508 * 119.99756 * 270.83400 * 6 5 3 16 16 C 1.50703 * 109.47059 * 274.10182 * 15 6 5 17 17 O 1.21277 * 119.99868 * 354.90532 * 16 15 6 18 18 N 1.34768 * 119.99805 * 174.90945 * 16 15 6 19 19 C 1.46509 * 119.99977 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.46897 * 179.97438 * 19 18 16 21 21 C 1.38223 * 120.01081 * 104.99997 * 20 19 18 22 22 C 1.38228 * 120.02237 * 179.97438 * 21 20 19 23 23 C 1.38261 * 120.05252 * 0.02627 * 22 21 20 24 24 C 1.38180 * 120.02756 * 359.97438 * 23 22 21 25 25 C 1.38436 * 120.01648 * 284.71951 * 20 19 18 26 26 F 1.35103 * 120.02194 * 0.02562 * 25 20 19 27 27 H 1.08995 * 109.47481 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47127 * 300.00354 * 1 2 3 29 29 H 1.08999 * 109.47086 * 59.99500 * 1 2 3 30 30 H 1.09000 * 109.47701 * 63.82896 * 5 3 2 31 31 H 1.08999 * 109.47069 * 303.82266 * 5 3 2 32 32 H 0.96997 * 120.00133 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.46872 * 154.09997 * 15 6 5 34 34 H 1.08999 * 109.47078 * 34.09917 * 15 6 5 35 35 H 0.96999 * 120.00257 * 359.97438 * 18 16 15 36 36 H 1.08994 * 109.46851 * 299.99486 * 19 18 16 37 37 H 1.08999 * 109.46911 * 59.99574 * 19 18 16 38 38 H 1.07997 * 119.98849 * 359.97438 * 21 20 19 39 39 H 1.08004 * 119.97256 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.98951 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.01076 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9820 2.6765 0.0917 7 6 4.1974 3.2475 1.3175 8 1 4.6737 4.2144 1.3867 9 6 3.8038 2.5836 2.4713 10 7 2.7416 1.8067 2.4535 11 14 4.7815 2.7930 4.0491 12 1 4.1633 3.8599 4.8767 13 1 4.7792 1.5154 4.8061 14 1 6.1794 3.1702 3.7189 15 6 4.1671 3.4675 -1.1275 16 6 5.5635 3.2587 -1.6545 17 8 6.3578 2.5963 -1.0213 18 7 5.9294 3.8081 -2.8295 19 6 7.2870 3.6056 -3.3416 20 6 7.4376 4.3179 -4.6610 21 6 8.1512 5.4996 -4.7313 22 6 8.2899 6.1528 -5.9416 23 6 7.7147 5.6255 -7.0829 24 6 7.0009 4.4443 -7.0151 25 6 6.8662 3.7860 -5.8043 26 9 6.1729 2.6283 -5.7377 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.9526 0.8413 -0.9231 31 1 3.9594 0.7223 0.8529 32 1 2.4663 1.3430 3.2598 33 1 4.0180 4.5233 -0.9018 34 1 3.4440 3.1510 -1.8792 35 1 5.2939 4.3376 -3.3361 36 1 8.0077 4.0053 -2.6282 37 1 7.4673 2.5398 -3.4817 38 1 8.6005 5.9126 -3.8403 39 1 8.8480 7.0759 -5.9956 40 1 7.8234 6.1370 -8.0280 41 1 6.5514 4.0328 -7.9068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:35 Heat of formation + Delta-G solvation = -104.414741 kcal Electronic energy + Delta-G solvation = -27223.919368 eV Core-core repulsion = 23019.985045 eV Total energy + Delta-G solvation = -4203.934324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.06146 -39.61222 -39.01476 -38.59145 -35.80951 -34.72965 -34.30701 -31.76206 -31.29237 -30.74008 -28.62582 -27.28662 -25.96956 -25.49853 -23.08148 -22.41100 -21.59684 -20.14418 -19.59843 -17.87925 -17.00971 -16.77468 -16.66324 -16.26726 -16.01167 -15.65177 -15.53316 -15.14367 -14.97270 -14.69258 -14.51391 -14.41670 -13.67625 -13.46575 -13.34255 -13.27662 -12.91084 -12.55959 -12.50323 -12.28699 -12.15468 -11.85528 -11.44539 -11.26183 -11.11261 -10.93114 -10.69272 -10.50251 -10.15321 -9.91339 -9.60317 -9.58744 -9.32650 -9.07924 -8.89731 -8.69615 -8.41989 -7.12712 -5.94483 -3.14902 0.78164 0.87968 3.16679 3.36570 3.40659 3.49756 3.56615 3.69312 3.89520 3.99108 4.09925 4.34709 4.44642 4.53338 4.63852 4.89469 5.00509 5.22818 5.32473 5.41136 5.44109 5.61736 5.74231 5.81760 5.82904 5.88074 5.90717 6.03092 6.07558 6.10814 6.13331 6.25311 6.30766 6.56018 6.67231 6.76971 6.96570 7.67772 7.79267 7.92207 8.13046 8.88564 9.00170 9.38051 9.70313 10.10368 11.17068 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003215 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.367324 B = 8707.986063 C =10107.494210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.381 6.381 3 C 0.467 3.533 4 O -0.506 6.506 5 C 0.191 3.809 6 N -0.542 5.542 7 C -0.257 4.257 8 H 0.080 0.920 9 C 0.008 3.992 10 N -0.887 5.887 11 Si 0.897 3.103 12 H -0.290 1.290 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.134 3.866 16 C 0.481 3.519 17 O -0.519 6.519 18 N -0.741 5.741 19 C 0.162 3.838 20 C -0.135 4.135 21 C -0.074 4.074 22 C -0.133 4.133 23 C -0.089 4.089 24 C -0.158 4.158 25 C 0.114 3.886 26 F -0.132 7.132 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.257 0.743 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.395 0.605 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 5.012 -18.820 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.299 6.299 3 C 0.307 3.693 4 O -0.391 6.391 5 C 0.061 3.939 6 N -0.258 5.258 7 C -0.384 4.384 8 H 0.098 0.902 9 C -0.191 4.191 10 N -0.530 5.530 11 Si 0.726 3.274 12 H -0.217 1.217 13 H -0.214 1.214 14 H -0.202 1.202 15 C 0.003 3.997 16 C 0.265 3.735 17 O -0.392 6.392 18 N -0.397 5.397 19 C 0.038 3.962 20 C -0.136 4.136 21 C -0.092 4.092 22 C -0.151 4.151 23 C -0.107 4.107 24 C -0.177 4.177 25 C 0.094 3.906 26 F -0.110 7.110 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.234 4.671 -18.122 20.064 hybrid contribution -0.290 0.221 0.639 0.736 sum 6.944 4.892 -17.482 19.436 Atomic orbital electron populations 1.22851 0.79751 1.01283 1.01274 1.86531 1.21017 1.36590 1.85721 1.25406 0.93335 0.80292 0.70311 1.90451 1.66653 1.36407 1.45553 1.20167 0.85609 0.86749 1.01347 1.43485 1.74183 1.06881 1.01283 1.19101 1.33261 1.04342 0.81745 0.90217 1.24663 0.96375 1.00202 0.97840 1.69984 1.20352 1.34033 1.28676 0.86364 0.80997 0.77071 0.82989 1.21698 1.21416 1.20234 1.20661 0.90369 0.98212 0.90498 1.23096 0.92746 0.78383 0.79229 1.90653 1.53481 1.38175 1.56878 1.46352 1.13010 1.56469 1.23836 1.19991 0.86331 0.99713 0.90124 1.20115 1.01340 0.97527 0.94661 1.21068 0.96604 0.93016 0.98558 1.21233 1.00783 1.00639 0.92478 1.21054 0.95948 0.94747 0.98983 1.21183 1.02528 0.97137 0.96822 1.17643 0.95008 0.83713 0.94246 1.91547 1.76515 1.45853 1.97082 0.90183 0.92729 0.93685 0.92442 0.87789 0.93239 0.89473 0.91423 0.77176 0.90537 0.90808 0.84683 0.85195 0.85042 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.51 10.56 -39.26 -0.41 -8.92 16 3 C 0.47 11.62 5.94 36.01 0.21 11.83 16 4 O -0.51 -13.86 15.84 -18.75 -0.30 -14.16 16 5 C 0.19 4.67 5.56 -5.19 -0.03 4.64 16 6 N -0.54 -13.58 1.52 -175.97 -0.27 -13.85 16 7 C -0.26 -7.09 9.59 -15.06 -0.14 -7.23 16 8 H 0.08 2.17 8.00 -52.48 -0.42 1.75 16 9 C 0.01 0.22 4.64 -17.43 -0.08 0.14 16 10 N -0.89 -25.61 9.51 55.49 0.53 -25.08 16 11 Si 0.90 22.13 29.66 -169.99 -5.04 17.09 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.13 2.71 6.15 -5.19 -0.03 2.68 16 16 C 0.48 9.15 7.89 -10.99 -0.09 9.06 16 17 O -0.52 -12.07 16.44 5.56 0.09 -11.97 16 18 N -0.74 -10.65 5.55 -61.47 -0.34 -10.99 16 19 C 0.16 2.11 5.49 -5.19 -0.03 2.08 16 20 C -0.14 -1.41 5.25 -104.56 -0.55 -1.96 16 21 C -0.07 -0.62 9.67 -39.59 -0.38 -1.01 16 22 C -0.13 -0.92 10.04 -39.58 -0.40 -1.32 16 23 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 24 C -0.16 -1.31 10.03 -39.51 -0.40 -1.70 16 25 C 0.11 1.21 7.25 -39.42 -0.29 0.92 16 26 F -0.13 -1.65 16.75 2.25 0.04 -1.61 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 30 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 31 H 0.10 2.75 6.66 -51.93 -0.35 2.41 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.09 1.67 8.01 -51.93 -0.42 1.25 16 34 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.40 4.75 8.46 -40.82 -0.35 4.41 16 36 H 0.08 1.00 7.95 -51.93 -0.41 0.59 16 37 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.14 0.97 8.00 -52.49 -0.42 0.55 16 39 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -35.25 363.48 -7.05 -42.30 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.29 Total: 2.75 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: -1.53 Total: 18.97 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.08 Total: -49.92 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.62 Total: -35.06 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.04 Total: 17.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.25 -7.05 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.113 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds