Wall clock time and date at job start Fri Apr 10 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36878 * 126.39829 * 2 1 4 4 C 1.34666 * 106.81597 * 180.23772 * 3 2 1 5 5 N 1.34129 * 108.02165 * 359.60606 * 4 3 2 6 6 C 1.30498 * 109.25671 * 0.40230 * 5 4 3 7 7 C 1.50696 * 125.65003 * 179.77584 * 6 5 4 8 8 N 1.46903 * 109.47129 * 269.97492 * 7 6 5 9 9 C 1.46907 * 110.99734 * 294.30271 * 8 7 6 10 10 C 1.53236 * 109.33764 * 172.74738 * 9 8 7 11 11 N 1.47075 * 108.52529 * 53.82893 * 10 9 8 12 12 C 1.34780 * 120.88497 * 128.79073 * 11 10 9 13 13 O 1.21283 * 120.00250 * 180.02562 * 12 11 10 14 14 C 1.50698 * 119.99461 * 0.02759 * 12 11 10 15 15 S 1.80999 * 109.46803 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00298 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99679 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00533 * 179.97438 * 16 15 14 19 19 N 1.31639 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47489 * 59.99828 * 20 18 16 22 22 H 1.48507 * 109.47303 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47057 * 299.99848 * 20 18 16 24 24 C 1.47083 * 118.23600 * 308.81439 * 11 10 9 25 25 C 1.46897 * 111.00315 * 170.00320 * 8 7 6 26 26 H 1.09003 * 109.46811 * 90.03237 * 1 2 3 27 27 H 1.09001 * 109.46881 * 210.02672 * 1 2 3 28 28 H 1.08992 * 109.46991 * 330.03263 * 1 2 3 29 29 H 1.08002 * 126.58785 * 359.96564 * 3 2 1 30 30 H 1.08003 * 125.98708 * 179.75770 * 4 3 2 31 31 H 1.08996 * 109.47237 * 29.97295 * 7 6 5 32 32 H 1.09004 * 109.47461 * 149.97686 * 7 6 5 33 33 H 1.08997 * 109.48984 * 292.70286 * 9 8 7 34 34 H 1.08993 * 109.49355 * 52.78816 * 9 8 7 35 35 H 1.09004 * 109.62670 * 294.12096 * 10 9 8 36 36 H 1.08995 * 109.62833 * 173.53904 * 10 9 8 37 37 H 1.09001 * 109.47034 * 299.99202 * 14 12 11 38 38 H 1.09001 * 109.47551 * 59.99913 * 14 12 11 39 39 H 0.96997 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.63324 * 291.47230 * 24 11 10 41 41 H 1.09005 * 109.62722 * 170.88809 * 24 11 10 42 42 H 1.09001 * 109.48877 * 307.21581 * 25 8 7 43 43 H 1.09004 * 109.49242 * 67.26219 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0053 5 7 3.5096 -0.6904 0.0002 6 6 2.2663 -1.0871 0.0002 7 6 1.8019 -2.5207 0.0008 8 7 1.6506 -2.9870 -1.3840 9 6 0.5713 -2.2626 -2.0685 10 6 0.5645 -2.6455 -3.5522 11 7 0.4936 -4.1108 -3.6563 12 6 -0.4319 -4.7051 -4.4354 13 8 -0.4763 -5.9148 -4.5091 14 6 -1.4114 -3.8661 -5.2150 15 16 -2.5158 -4.9474 -6.1570 16 6 -3.5251 -3.7393 -6.9485 17 1 -3.3496 -2.6885 -6.7705 18 6 -4.5455 -4.1378 -7.8007 19 7 -4.7590 -5.4184 -8.0181 20 14 -5.6150 -2.8570 -8.6403 21 1 -4.7654 -1.9787 -9.4841 22 1 -6.6238 -3.5361 -9.4926 23 1 -6.3057 -2.0378 -7.6121 24 6 1.4590 -4.9107 -2.8873 25 6 1.4305 -4.4387 -1.4297 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5133 29 1 1.9613 2.1345 -0.0005 30 1 4.4369 1.2611 -0.0105 31 1 2.5366 -3.1404 0.5146 32 1 0.8433 -2.5919 0.5149 33 1 -0.3861 -2.5279 -1.6201 34 1 0.7344 -1.1894 -1.9705 35 1 1.4788 -2.2886 -4.0266 36 1 -0.3025 -2.2013 -4.0410 37 1 -1.9981 -3.2584 -4.5261 38 1 -0.8681 -3.2161 -5.9007 39 1 -5.4724 -5.6969 -8.6134 40 1 2.4592 -4.7716 -3.2977 41 1 1.1833 -5.9641 -2.9364 42 1 2.2167 -4.9435 -0.8683 43 1 0.4613 -4.6736 -0.9897 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106030587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:48 Heat of formation + Delta-G solvation = 51.454664 kcal Electronic energy + Delta-G solvation = -25047.257262 eV Core-core repulsion = 21448.587870 eV Total energy + Delta-G solvation = -3598.669392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.42873 -39.99086 -37.96688 -34.81671 -34.33837 -32.45691 -31.81799 -30.76429 -29.34379 -27.84626 -27.08691 -25.52954 -24.71478 -23.88850 -21.70139 -21.41550 -19.96912 -19.03102 -17.78306 -17.45651 -16.98885 -16.30892 -15.78663 -15.46654 -15.42063 -15.17846 -14.83922 -14.81349 -14.48797 -13.98635 -13.92891 -13.59503 -13.34739 -13.29064 -13.12323 -12.94410 -12.64583 -12.50423 -12.13992 -11.88755 -11.53291 -11.46875 -11.28041 -11.06843 -11.06648 -10.79021 -10.20604 -9.89865 -9.84375 -9.39161 -9.08885 -8.92841 -8.71160 -8.41566 -8.26128 -6.53320 -6.24242 -3.95266 1.68439 2.41620 2.78531 2.92086 3.02080 3.20586 3.22906 3.26511 3.54085 3.64955 4.02911 4.17443 4.25880 4.42624 4.54690 4.62712 4.68795 4.79182 4.87638 4.91736 4.96988 5.08119 5.10771 5.14535 5.18903 5.22372 5.34653 5.40324 5.48670 5.52875 5.67847 5.75501 5.82602 5.92533 5.94233 6.06654 6.46164 6.49966 6.57337 6.66326 6.84882 7.53454 7.56333 7.86042 8.31855 8.52526 9.20722 10.83125 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.002733 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.795339 B =10243.878091 C =11458.324156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.459 5.459 3 C -0.058 4.058 4 C -0.028 4.028 5 N -0.474 5.474 6 C 0.214 3.786 7 C 0.142 3.858 8 N -0.529 5.529 9 C 0.035 3.965 10 C 0.116 3.884 11 N -0.622 5.622 12 C 0.535 3.465 13 O -0.516 6.516 14 C -0.151 4.151 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.071 0.929 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.119 3.881 25 C 0.044 3.956 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.345 12.527 18.865 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.143 5.143 3 C -0.191 4.191 4 C -0.177 4.177 5 N -0.193 5.193 6 C -0.049 4.049 7 C 0.013 3.987 8 N -0.254 5.254 9 C -0.094 4.094 10 C -0.008 4.008 11 N -0.359 5.359 12 C 0.323 3.677 13 O -0.390 6.390 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.004 4.004 25 C -0.084 4.084 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.191 0.809 30 H 0.187 0.813 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.111 10.148 18.404 24.770 hybrid contribution -2.102 2.977 -0.024 3.645 sum 11.009 13.126 18.379 25.125 Atomic orbital electron populations 1.22202 0.76815 1.04770 1.04042 1.45370 1.07478 1.06790 1.54633 1.22714 0.91414 0.92484 1.12457 1.22326 0.96413 0.91221 1.07702 1.70242 1.18368 1.11841 1.18799 1.22959 0.85828 0.90230 1.05844 1.20322 1.00379 0.87814 0.90209 1.61869 1.44636 1.04802 1.14123 1.22719 0.92487 0.98866 0.95320 1.21749 1.03311 0.80642 0.95129 1.48160 1.33782 1.06551 1.47397 1.20330 0.80250 0.88556 0.78533 1.90693 1.70979 1.14230 1.63123 1.23548 1.00667 1.03718 1.02176 1.85419 1.34464 1.09024 1.54400 1.22809 1.19271 0.94014 1.32344 0.91035 1.24991 0.96709 0.95986 0.95869 1.70010 1.30771 1.14308 1.35150 0.86228 0.79529 0.80573 0.79183 1.19913 1.20784 1.19971 1.21610 0.92851 0.96869 0.89114 1.22530 1.00973 0.86936 0.97947 0.89928 0.89571 0.89336 0.80904 0.81332 0.87407 0.93290 0.93991 0.89982 0.90667 0.88928 0.89473 0.89253 0.92098 0.90863 0.88329 0.89093 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 9.63 59.85 0.58 0.89 16 2 N -0.46 -3.69 2.74 -121.28 -0.33 -4.02 16 3 C -0.06 -0.45 11.58 -16.56 -0.19 -0.65 16 4 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16 5 N -0.47 -5.76 11.25 -10.82 -0.12 -5.88 16 6 C 0.21 2.15 6.55 -155.42 -1.02 1.14 16 7 C 0.14 1.21 5.28 -4.98 -0.03 1.18 16 8 N -0.53 -5.16 4.62 -235.76 -1.09 -6.25 16 9 C 0.03 0.33 4.69 -3.70 -0.02 0.31 16 10 C 0.12 1.32 6.50 -3.61 -0.02 1.30 16 11 N -0.62 -8.91 3.01 -172.46 -0.52 -9.43 16 12 C 0.54 10.13 7.73 -10.99 -0.08 10.05 16 13 O -0.52 -11.71 15.31 5.56 0.09 -11.63 16 14 C -0.15 -3.02 4.52 36.00 0.16 -2.86 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 17 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 20 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.12 1.45 6.60 -3.60 -0.02 1.43 16 25 C 0.04 0.43 5.62 -3.70 -0.02 0.40 16 26 H 0.08 0.38 6.74 -51.93 -0.35 0.03 16 27 H 0.09 0.36 7.05 -51.93 -0.37 -0.01 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 31 H 0.11 0.87 7.97 -51.93 -0.41 0.46 16 32 H 0.05 0.34 7.05 -51.93 -0.37 -0.03 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.73 4.60 -51.93 -0.24 0.49 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.03 6.02 -51.93 -0.31 0.71 16 37 H 0.09 1.60 7.66 -51.92 -0.40 1.20 16 38 H 0.09 1.68 8.00 -51.91 -0.42 1.26 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 1.33 7.06 -51.93 -0.37 0.96 16 42 H 0.09 0.70 7.99 -51.93 -0.41 0.29 16 43 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -36.51 360.24 -9.88 -46.39 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.15 Total: -1.56 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.68 Total: -0.10 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -1.33 Total: -50.82 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.51 -9.88 -46.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106030587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.846 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds