Wall clock time and date at job start Fri Apr 10 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36878 * 126.39829 * 2 1 4 4 C 1.34666 * 106.81597 * 180.23772 * 3 2 1 5 5 N 1.34129 * 108.02165 * 359.60606 * 4 3 2 6 6 C 1.30498 * 109.25671 * 0.40230 * 5 4 3 7 7 C 1.50696 * 125.65003 * 179.77584 * 6 5 4 8 8 N 1.46903 * 109.47129 * 269.97492 * 7 6 5 9 9 C 1.46907 * 110.99734 * 294.30271 * 8 7 6 10 10 C 1.53236 * 109.33764 * 172.74738 * 9 8 7 11 11 N 1.47075 * 108.52529 * 53.82893 * 10 9 8 12 12 C 1.34780 * 120.88497 * 128.79073 * 11 10 9 13 13 O 1.21283 * 120.00250 * 180.02562 * 12 11 10 14 14 C 1.50698 * 119.99461 * 0.02759 * 12 11 10 15 15 S 1.80999 * 109.46803 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00298 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99679 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00533 * 179.97438 * 16 15 14 19 19 N 1.31639 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47489 * 59.99828 * 20 18 16 22 22 H 1.48507 * 109.47303 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47057 * 299.99848 * 20 18 16 24 24 C 1.47083 * 118.23600 * 308.81439 * 11 10 9 25 25 C 1.46897 * 111.00315 * 170.00320 * 8 7 6 26 26 H 1.09003 * 109.46811 * 90.03237 * 1 2 3 27 27 H 1.09001 * 109.46881 * 210.02672 * 1 2 3 28 28 H 1.08992 * 109.46991 * 330.03263 * 1 2 3 29 29 H 1.08002 * 126.58785 * 359.96564 * 3 2 1 30 30 H 1.08003 * 125.98708 * 179.75770 * 4 3 2 31 31 H 1.08996 * 109.47237 * 29.97295 * 7 6 5 32 32 H 1.09004 * 109.47461 * 149.97686 * 7 6 5 33 33 H 1.08997 * 109.48984 * 292.70286 * 9 8 7 34 34 H 1.08993 * 109.49355 * 52.78816 * 9 8 7 35 35 H 1.09004 * 109.62670 * 294.12096 * 10 9 8 36 36 H 1.08995 * 109.62833 * 173.53904 * 10 9 8 37 37 H 1.09001 * 109.47034 * 299.99202 * 14 12 11 38 38 H 1.09001 * 109.47551 * 59.99913 * 14 12 11 39 39 H 0.96997 * 119.99651 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.63324 * 291.47230 * 24 11 10 41 41 H 1.09005 * 109.62722 * 170.88809 * 24 11 10 42 42 H 1.09001 * 109.48877 * 307.21581 * 25 8 7 43 43 H 1.09004 * 109.49242 * 67.26219 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0053 5 7 3.5096 -0.6904 0.0002 6 6 2.2663 -1.0871 0.0002 7 6 1.8019 -2.5207 0.0008 8 7 1.6506 -2.9870 -1.3840 9 6 0.5713 -2.2626 -2.0685 10 6 0.5645 -2.6455 -3.5522 11 7 0.4936 -4.1108 -3.6563 12 6 -0.4319 -4.7051 -4.4354 13 8 -0.4763 -5.9148 -4.5091 14 6 -1.4114 -3.8661 -5.2150 15 16 -2.5158 -4.9474 -6.1570 16 6 -3.5251 -3.7393 -6.9485 17 1 -3.3496 -2.6885 -6.7705 18 6 -4.5455 -4.1378 -7.8007 19 7 -4.7590 -5.4184 -8.0181 20 14 -5.6150 -2.8570 -8.6403 21 1 -4.7654 -1.9787 -9.4841 22 1 -6.6238 -3.5361 -9.4926 23 1 -6.3057 -2.0378 -7.6121 24 6 1.4590 -4.9107 -2.8873 25 6 1.4305 -4.4387 -1.4297 26 1 -0.3633 -0.0006 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5133 29 1 1.9613 2.1345 -0.0005 30 1 4.4369 1.2611 -0.0105 31 1 2.5366 -3.1404 0.5146 32 1 0.8433 -2.5919 0.5149 33 1 -0.3861 -2.5279 -1.6201 34 1 0.7344 -1.1894 -1.9705 35 1 1.4788 -2.2886 -4.0266 36 1 -0.3025 -2.2013 -4.0410 37 1 -1.9981 -3.2584 -4.5261 38 1 -0.8681 -3.2161 -5.9007 39 1 -5.4724 -5.6969 -8.6134 40 1 2.4592 -4.7716 -3.2977 41 1 1.1833 -5.9641 -2.9364 42 1 2.2167 -4.9435 -0.8683 43 1 0.4613 -4.6736 -0.9897 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106030587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:47 Heat of formation + Delta-G solvation = 25.865297 kcal Electronic energy + Delta-G solvation = -25048.366900 eV Core-core repulsion = 21448.587870 eV Total energy + Delta-G solvation = -3599.779030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.05029 -41.19126 -39.08890 -35.91947 -34.92480 -34.58538 -32.80503 -31.57499 -30.66106 -28.65051 -27.75843 -27.58661 -25.55803 -24.80169 -22.56801 -22.21005 -20.65628 -20.32876 -19.50909 -18.34595 -17.97436 -17.15410 -17.03790 -16.87532 -16.70385 -16.29629 -15.91085 -15.82171 -15.46528 -15.26053 -14.76209 -14.62138 -14.48140 -14.42919 -13.87825 -13.82950 -13.58338 -13.46287 -13.17997 -13.14704 -12.90091 -12.86612 -12.64119 -12.44937 -12.31840 -12.15349 -11.73478 -11.12928 -10.91406 -10.89373 -10.51758 -10.27602 -9.91443 -9.46437 -9.24508 -8.68129 -8.34565 -6.13340 1.07054 1.24163 1.43975 1.45205 1.53647 1.54910 1.90333 2.01944 2.16871 2.27196 2.90130 2.99583 3.22631 3.40070 3.59948 3.79279 3.89478 3.92021 3.96854 4.12097 4.14371 4.23615 4.24161 4.33799 4.36307 4.41424 4.47389 4.56930 4.59649 4.63363 4.72792 4.76328 4.78445 4.87905 4.99026 5.34582 5.41154 5.43822 5.80693 5.84849 5.91492 6.19245 6.24690 6.27852 7.06424 7.09554 7.21190 8.74436 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.002733 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.795339 B =10243.878091 C =11458.324156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.458 5.458 3 C -0.046 4.046 4 C -0.059 4.059 5 N -0.516 5.516 6 C 0.198 3.802 7 C 0.146 3.854 8 N -0.539 5.539 9 C 0.043 3.957 10 C 0.110 3.890 11 N -0.609 5.609 12 C 0.534 3.466 13 O -0.564 6.564 14 C -0.123 4.123 15 S -0.151 6.151 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.260 1.260 24 C 0.115 3.885 25 C 0.055 3.945 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.205 0.795 30 H 0.179 0.821 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.983 15.546 19.973 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.141 5.141 3 C -0.180 4.180 4 C -0.207 4.207 5 N -0.236 5.236 6 C -0.064 4.064 7 C 0.017 3.983 8 N -0.265 5.265 9 C -0.085 4.085 10 C -0.013 4.013 11 N -0.344 5.344 12 C 0.322 3.678 13 O -0.442 6.442 14 C -0.275 4.275 15 S 0.076 5.924 16 C -0.693 4.693 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.184 1.184 24 C -0.007 4.007 25 C -0.074 4.074 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.222 0.778 30 H 0.197 0.803 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.776 13.209 19.553 26.833 hybrid contribution -1.851 2.105 -0.273 2.817 sum 10.925 15.315 19.280 26.937 Atomic orbital electron populations 1.22459 0.74858 1.06303 1.04810 1.45566 1.08651 1.06246 1.53587 1.23209 0.90792 0.93735 1.10271 1.22690 0.97994 0.90880 1.09153 1.70168 1.20006 1.13271 1.20172 1.23114 0.85800 0.91138 1.06390 1.20332 1.01341 0.87217 0.89398 1.61822 1.44771 1.04621 1.15267 1.22639 0.92831 0.99398 0.93663 1.21996 1.03834 0.78460 0.97020 1.48149 1.32363 1.08113 1.45729 1.20133 0.80893 0.87763 0.78998 1.90678 1.72512 1.16027 1.65016 1.23360 0.99750 1.02370 1.01972 1.85618 1.37123 1.13197 1.56462 1.23155 1.19404 0.94341 1.32422 0.89811 1.26138 0.98211 0.98320 0.96486 1.70184 1.31670 1.16839 1.36127 0.85004 0.77366 0.77490 0.78137 1.18704 1.20527 1.18430 1.21765 0.92291 0.95945 0.90746 1.22431 1.01807 0.87259 0.95857 0.89425 0.88811 0.87228 0.77780 0.80336 0.87254 0.91371 0.93350 0.88917 0.90209 0.88319 0.87248 0.87660 0.91996 0.90171 0.89955 0.86967 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 9.63 127.77 1.23 1.58 16 2 N -0.46 -6.09 2.74 -537.61 -1.47 -7.56 16 3 C -0.05 -0.61 11.58 83.09 0.96 0.35 16 4 C -0.06 -1.09 11.87 83.52 0.99 -0.10 16 5 N -0.52 -12.06 11.25 -188.13 -2.12 -14.17 16 6 C 0.20 3.61 6.55 138.13 0.91 4.52 16 7 C 0.15 2.14 5.28 85.55 0.45 2.59 16 8 N -0.54 -9.25 4.62 -899.82 -4.16 -13.41 16 9 C 0.04 0.70 4.69 86.38 0.41 1.11 16 10 C 0.11 2.26 6.50 86.35 0.56 2.82 16 11 N -0.61 -16.74 3.01 -817.94 -2.46 -19.20 16 12 C 0.53 20.17 7.73 87.66 0.68 20.84 16 13 O -0.56 -26.36 15.31 -3.04 -0.05 -26.41 16 14 C -0.12 -4.88 4.52 71.24 0.32 -4.56 16 15 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 16 C -0.55 -30.69 9.50 67.95 0.65 -30.04 16 17 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 18 C 0.01 0.74 5.49 84.85 0.47 1.21 16 19 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 20 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C 0.11 2.71 6.60 86.35 0.57 3.28 16 25 C 0.05 0.94 5.62 86.38 0.49 1.43 16 26 H 0.09 0.48 6.74 -2.39 -0.02 0.47 16 27 H 0.09 0.45 7.05 -2.39 -0.02 0.43 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.21 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.11 1.56 7.97 -2.39 -0.02 1.54 16 32 H 0.07 0.74 7.05 -2.38 -0.02 0.72 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.36 4.60 -2.39 -0.01 1.35 16 35 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.10 1.92 6.02 -2.39 -0.01 1.90 16 37 H 0.11 3.82 7.66 -2.39 -0.02 3.80 16 38 H 0.11 3.81 8.00 -2.40 -0.02 3.79 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.25 7.06 -2.38 -0.02 2.23 16 42 H 0.11 1.49 7.99 -2.39 -0.02 1.47 16 43 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -81.82 360.24 0.59 -81.23 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.02 Total: 14.57 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 8.67 Total: 5.03 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -9.92 Total: -109.74 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -81.82 0.59 -81.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106030587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.095 kcal (2) G-P(sol) polarization free energy of solvation -81.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds