Wall clock time and date at job start Fri Apr 10 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91918 * 2 1 4 4 C 1.31776 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.33635 * 114.50289 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.03805 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46901 * 90.02014 * 6 5 4 8 8 C 1.46952 * 110.99924 * 293.79546 * 7 6 5 9 9 C 1.53044 * 109.36655 * 176.81678 * 8 7 6 10 10 N 1.46954 * 109.36804 * 58.40111 * 9 8 7 11 11 C 1.46897 * 111.00234 * 176.81667 * 10 9 8 12 12 C 1.50698 * 109.46835 * 293.79766 * 11 10 9 13 13 O 1.21288 * 120.00198 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00112 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00220 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00092 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00155 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99920 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47231 * 90.00803 * 19 17 15 21 21 H 1.48509 * 109.47264 * 210.00319 * 19 17 15 22 22 H 1.48498 * 109.47551 * 330.00430 * 19 17 15 23 23 C 1.46959 * 110.88027 * 300.68171 * 10 9 8 24 24 C 1.46962 * 110.99694 * 169.99765 * 7 6 5 25 25 S 1.70977 * 124.91502 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47170 * 269.95235 * 1 2 3 27 27 H 1.09004 * 109.47224 * 29.95207 * 1 2 3 28 28 H 1.09002 * 109.47569 * 149.95396 * 1 2 3 29 29 H 1.08004 * 122.74701 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47049 * 210.01560 * 6 5 4 31 31 H 1.08991 * 109.47647 * 330.01681 * 6 5 4 32 32 H 1.09006 * 109.48995 * 296.78668 * 8 7 6 33 33 H 1.09004 * 109.48924 * 56.84546 * 8 7 6 34 34 H 1.09002 * 109.48646 * 298.43585 * 9 8 7 35 35 H 1.08997 * 109.50975 * 178.38510 * 9 8 7 36 36 H 1.09000 * 109.47506 * 53.79674 * 11 10 9 37 37 H 1.09003 * 109.47045 * 173.79940 * 11 10 9 38 38 H 0.97003 * 120.00028 * 359.97438 * 14 12 11 39 39 H 0.96996 * 119.99921 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.48896 * 299.35517 * 23 10 9 41 41 H 1.08996 * 109.48958 * 179.28671 * 23 10 9 42 42 H 1.08990 * 109.49094 * 303.15407 * 24 7 6 43 43 H 1.09002 * 109.48729 * 63.22013 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3574 -0.8994 -0.0029 7 7 5.8203 -1.0628 1.3818 8 6 5.9094 0.2358 2.0639 9 6 6.3172 0.0160 3.5225 10 7 7.6060 -0.6886 3.5673 11 6 8.0689 -0.8519 4.9518 12 6 8.3825 0.4999 5.5393 13 8 8.2345 1.5010 4.8707 14 7 8.8275 0.5967 6.8079 15 6 9.1123 1.8265 7.3425 16 1 8.9797 2.7179 6.7474 17 6 9.5705 1.9263 8.6505 18 7 9.7314 0.8417 9.3749 19 14 9.9592 3.6020 9.3787 20 1 8.7424 4.1548 10.0260 21 1 11.0384 3.4642 10.3897 22 1 10.4060 4.5192 8.2997 23 6 7.5170 -1.9872 2.8852 24 6 7.1092 -1.7674 1.4265 25 16 2.4856 -1.4020 -0.0006 26 1 -0.3633 -0.0009 1.0277 27 1 -0.3634 0.8904 -0.5131 28 1 -0.3634 -0.8896 -0.5145 29 1 4.2532 1.7000 -0.0002 30 1 5.4054 -1.8591 -0.5175 31 1 5.9946 -0.1796 -0.5164 32 1 6.6550 0.8570 1.5674 33 1 4.9398 0.7326 2.0282 34 1 5.5580 -0.5824 4.0261 35 1 6.4119 0.9795 4.0232 36 1 7.2883 -1.3322 5.5418 37 1 8.9663 -1.4705 4.9643 38 1 8.9456 -0.2038 7.3428 39 1 10.0516 0.9113 10.2878 40 1 6.7714 -2.6084 3.3815 41 1 8.4866 -2.4839 2.9208 42 1 7.0144 -2.7311 0.9262 43 1 7.8685 -1.1690 0.9229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108867271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:06 Heat of formation + Delta-G solvation = 26.930659 kcal Electronic energy + Delta-G solvation = -24755.279225 eV Core-core repulsion = 21155.546392 eV Total energy + Delta-G solvation = -3599.732833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06432 -39.24697 -37.89779 -35.46174 -33.84338 -32.58490 -31.25046 -30.76030 -30.15049 -27.98684 -25.87573 -24.57095 -23.65608 -23.45313 -22.63977 -19.77629 -19.46645 -19.17477 -18.13423 -17.84582 -16.35079 -15.91972 -15.61140 -15.21994 -14.96589 -14.91218 -14.67360 -14.41444 -14.21238 -13.89003 -13.73206 -13.50244 -13.38498 -13.14140 -12.78788 -12.55792 -12.33536 -12.20788 -11.80221 -11.52336 -11.48881 -11.27420 -11.11128 -11.05066 -10.69463 -10.66329 -10.37854 -10.20462 -9.78702 -9.47169 -9.43186 -8.98186 -8.51521 -8.36004 -7.96304 -7.81807 -6.40452 -3.81099 0.49133 1.14316 1.57604 2.62693 3.18615 3.27193 3.33151 3.83830 3.92224 3.96744 4.01994 4.26349 4.60045 4.78647 4.85643 4.92326 5.04010 5.11435 5.15830 5.22341 5.25656 5.27091 5.37619 5.47794 5.54210 5.54955 5.58933 5.68804 5.78985 5.89894 5.93298 5.97822 5.99526 6.22068 6.30177 6.42951 6.84816 6.93771 7.31992 7.43232 7.55697 7.56514 8.07963 8.63394 9.19568 9.56113 10.07987 10.77373 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.002422 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.620234 B =11557.834662 C =12375.735872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.035 3.965 3 N -0.473 5.473 4 C 0.040 3.960 5 C -0.207 4.207 6 C 0.131 3.869 7 N -0.538 5.538 8 C 0.059 3.941 9 C 0.057 3.943 10 N -0.517 5.517 11 C 0.047 3.953 12 C 0.444 3.556 13 O -0.578 6.578 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.056 3.944 24 C 0.061 3.939 25 S 0.135 5.865 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -9.489 -18.693 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.242 4.242 3 N -0.188 5.188 4 C -0.112 4.112 5 C -0.329 4.329 6 C 0.001 3.999 7 N -0.263 5.263 8 C -0.068 4.068 9 C -0.071 4.071 10 N -0.242 5.242 11 C -0.085 4.085 12 C 0.230 3.770 13 O -0.462 6.462 14 N -0.201 5.201 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.072 4.072 24 C -0.067 4.067 25 S 0.389 5.611 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.190 0.810 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.006 -9.383 -18.941 25.357 hybrid contribution 0.981 0.979 0.923 1.665 sum -13.025 -8.404 -18.017 23.768 Atomic orbital electron populations 1.20425 0.85348 1.04007 1.03917 1.27035 1.01799 0.91323 1.04056 1.66274 1.04859 1.31687 1.15987 1.21724 0.91129 0.95905 1.02437 1.25796 0.99655 0.96026 1.11399 1.20357 0.88092 1.00849 0.90599 1.62228 1.28722 1.21617 1.13763 1.22218 1.00568 0.89257 0.94781 1.22301 0.88309 1.01128 0.95342 1.61759 1.28875 1.18431 1.15122 1.21831 1.00435 0.97452 0.88732 1.19748 0.84317 0.89958 0.83004 1.90476 1.57507 1.37806 1.60446 1.41873 1.57806 1.09608 1.10850 1.19689 1.40753 0.86109 0.96178 0.87942 1.25257 0.97412 0.99000 0.96317 1.69611 1.46668 1.27998 1.10096 0.85866 0.78077 0.81677 0.78720 1.20437 1.20935 1.19420 1.22160 1.00460 0.90974 0.93622 1.22132 0.89214 0.98300 0.97008 1.83897 0.97359 1.12064 1.67731 0.89599 0.89382 0.90238 0.80999 0.89612 0.92377 0.93536 0.90592 0.95244 0.87474 0.93444 0.89364 0.77498 0.91899 0.94327 0.90287 0.90477 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.13 16 2 C 0.04 0.36 7.39 -13.46 -0.10 0.26 16 3 N -0.47 -5.86 10.54 -11.86 -0.13 -5.98 16 4 C 0.04 0.46 9.77 -19.19 -0.19 0.27 16 5 C -0.21 -2.20 5.51 -35.92 -0.20 -2.40 16 6 C 0.13 1.29 5.50 -4.97 -0.03 1.26 16 7 N -0.54 -6.50 4.70 -235.91 -1.11 -7.61 16 8 C 0.06 0.85 5.37 -3.77 -0.02 0.83 16 9 C 0.06 0.98 5.26 -3.77 -0.02 0.96 16 10 N -0.52 -8.78 4.45 -235.92 -1.05 -9.83 16 11 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 12 C 0.44 10.54 7.48 -10.99 -0.08 10.45 16 13 O -0.58 -15.55 13.91 5.55 0.08 -15.47 16 14 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 15 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 19 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 C 0.06 0.74 5.61 -3.76 -0.02 0.72 16 24 C 0.06 0.70 5.61 -3.76 -0.02 0.68 16 25 S 0.14 1.27 23.18 -107.50 -2.49 -1.23 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 31 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.07 6.15 -51.93 -0.32 0.75 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 2.20 5.85 -51.93 -0.30 1.90 16 36 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.92 8.07 -51.93 -0.42 0.51 16 42 H 0.08 0.69 8.07 -51.93 -0.42 0.28 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -32.28 363.43 -10.50 -42.78 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.35 Total: 8.36 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.57 Total: 5.74 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -1.62 Total: -61.83 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.28 -10.50 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108867271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.714 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds