Wall clock time and date at job start Fri Apr 10 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91918 * 2 1 4 4 C 1.31776 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.33635 * 114.50289 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.03805 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46901 * 90.02014 * 6 5 4 8 8 C 1.46952 * 110.99924 * 293.79546 * 7 6 5 9 9 C 1.53044 * 109.36655 * 176.81678 * 8 7 6 10 10 N 1.46954 * 109.36804 * 58.40111 * 9 8 7 11 11 C 1.46897 * 111.00234 * 176.81667 * 10 9 8 12 12 C 1.50698 * 109.46835 * 293.79766 * 11 10 9 13 13 O 1.21288 * 120.00198 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00112 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00220 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00092 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00155 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99920 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99995 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47231 * 90.00803 * 19 17 15 21 21 H 1.48509 * 109.47264 * 210.00319 * 19 17 15 22 22 H 1.48498 * 109.47551 * 330.00430 * 19 17 15 23 23 C 1.46959 * 110.88027 * 300.68171 * 10 9 8 24 24 C 1.46962 * 110.99694 * 169.99765 * 7 6 5 25 25 S 1.70977 * 124.91502 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47170 * 269.95235 * 1 2 3 27 27 H 1.09004 * 109.47224 * 29.95207 * 1 2 3 28 28 H 1.09002 * 109.47569 * 149.95396 * 1 2 3 29 29 H 1.08004 * 122.74701 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47049 * 210.01560 * 6 5 4 31 31 H 1.08991 * 109.47647 * 330.01681 * 6 5 4 32 32 H 1.09006 * 109.48995 * 296.78668 * 8 7 6 33 33 H 1.09004 * 109.48924 * 56.84546 * 8 7 6 34 34 H 1.09002 * 109.48646 * 298.43585 * 9 8 7 35 35 H 1.08997 * 109.50975 * 178.38510 * 9 8 7 36 36 H 1.09000 * 109.47506 * 53.79674 * 11 10 9 37 37 H 1.09003 * 109.47045 * 173.79940 * 11 10 9 38 38 H 0.97003 * 120.00028 * 359.97438 * 14 12 11 39 39 H 0.96996 * 119.99921 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.48896 * 299.35517 * 23 10 9 41 41 H 1.08996 * 109.48958 * 179.28671 * 23 10 9 42 42 H 1.08990 * 109.49094 * 303.15407 * 24 7 6 43 43 H 1.09002 * 109.48729 * 63.22013 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3574 -0.8994 -0.0029 7 7 5.8203 -1.0628 1.3818 8 6 5.9094 0.2358 2.0639 9 6 6.3172 0.0160 3.5225 10 7 7.6060 -0.6886 3.5673 11 6 8.0689 -0.8519 4.9518 12 6 8.3825 0.4999 5.5393 13 8 8.2345 1.5010 4.8707 14 7 8.8275 0.5967 6.8079 15 6 9.1123 1.8265 7.3425 16 1 8.9797 2.7179 6.7474 17 6 9.5705 1.9263 8.6505 18 7 9.7314 0.8417 9.3749 19 14 9.9592 3.6020 9.3787 20 1 8.7424 4.1548 10.0260 21 1 11.0384 3.4642 10.3897 22 1 10.4060 4.5192 8.2997 23 6 7.5170 -1.9872 2.8852 24 6 7.1092 -1.7674 1.4265 25 16 2.4856 -1.4020 -0.0006 26 1 -0.3633 -0.0009 1.0277 27 1 -0.3634 0.8904 -0.5131 28 1 -0.3634 -0.8896 -0.5145 29 1 4.2532 1.7000 -0.0002 30 1 5.4054 -1.8591 -0.5175 31 1 5.9946 -0.1796 -0.5164 32 1 6.6550 0.8570 1.5674 33 1 4.9398 0.7326 2.0282 34 1 5.5580 -0.5824 4.0261 35 1 6.4119 0.9795 4.0232 36 1 7.2883 -1.3322 5.5418 37 1 8.9663 -1.4705 4.9643 38 1 8.9456 -0.2038 7.3428 39 1 10.0516 0.9113 10.2878 40 1 6.7714 -2.6084 3.3815 41 1 8.4866 -2.4839 2.9208 42 1 7.0144 -2.7311 0.9262 43 1 7.8685 -1.1690 0.9229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108867271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:06 Heat of formation + Delta-G solvation = 2.234271 kcal Electronic energy + Delta-G solvation = -24756.350141 eV Core-core repulsion = 21155.546392 eV Total energy + Delta-G solvation = -3600.803748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99864 -40.52280 -39.46810 -36.71318 -35.81082 -33.44094 -33.23402 -31.86813 -31.10708 -29.19982 -27.26077 -25.97308 -24.71772 -24.58030 -23.65816 -21.10649 -20.79213 -20.29252 -19.88147 -18.91347 -17.80856 -17.30041 -16.62322 -16.45242 -16.38326 -16.10132 -15.91919 -15.69230 -15.42395 -15.30831 -15.00413 -14.86641 -14.46614 -14.01232 -13.84645 -13.52276 -13.43572 -13.32388 -13.13609 -12.96668 -12.84519 -12.65785 -12.43104 -12.25332 -12.13900 -12.11933 -11.93783 -11.80839 -11.45120 -10.57887 -10.29718 -10.21210 -10.00460 -9.76071 -9.41558 -9.19719 -8.46924 -5.95380 -0.28304 0.40714 0.79670 1.36879 1.40509 1.53273 1.79958 2.05038 2.27723 2.74883 2.93028 3.19758 3.27914 3.37708 3.78015 3.87755 4.06473 4.12798 4.16247 4.20978 4.32573 4.39509 4.46032 4.48616 4.54564 4.57364 4.61515 4.63447 4.66884 4.80409 4.85393 4.92391 5.00747 5.02409 5.09110 5.24484 5.40465 5.79629 5.88461 5.98479 6.11041 6.22737 6.60651 6.77854 7.12884 7.56366 8.12411 8.70599 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.002422 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.620234 B =11557.834662 C =12375.735872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.027 3.973 3 N -0.509 5.509 4 C 0.024 3.976 5 C -0.218 4.218 6 C 0.133 3.867 7 N -0.540 5.540 8 C 0.074 3.926 9 C 0.063 3.937 10 N -0.534 5.534 11 C 0.059 3.941 12 C 0.441 3.559 13 O -0.615 6.615 14 N -0.575 5.575 15 C -0.331 4.331 16 H 0.078 0.922 17 C -0.014 4.014 18 N -0.921 5.921 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.274 1.274 23 C 0.055 3.945 24 C 0.063 3.937 25 S 0.170 5.830 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.170 0.830 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.044 0.956 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 -11.494 -19.451 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.250 4.250 3 N -0.225 5.225 4 C -0.128 4.128 5 C -0.340 4.340 6 C 0.004 3.996 7 N -0.265 5.265 8 C -0.054 4.054 9 C -0.066 4.066 10 N -0.259 5.259 11 C -0.072 4.072 12 C 0.229 3.771 13 O -0.501 6.501 14 N -0.212 5.212 15 C -0.461 4.461 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.562 5.562 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.072 4.072 24 C -0.065 4.065 25 S 0.425 5.575 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.187 0.813 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.468 -11.430 -19.708 26.988 hybrid contribution 1.062 1.555 1.102 2.182 sum -13.406 -9.875 -18.605 24.968 Atomic orbital electron populations 1.20604 0.83130 1.05314 1.04801 1.27657 1.03305 0.91322 1.02697 1.66299 1.05376 1.33130 1.17694 1.21806 0.91247 0.96546 1.03179 1.25937 1.00649 0.96094 1.11355 1.20438 0.87567 1.02239 0.89345 1.62214 1.29266 1.19900 1.15109 1.21946 0.99791 0.90481 0.93208 1.22095 0.88653 0.99007 0.96808 1.61738 1.28734 1.21043 1.14428 1.21712 1.02072 0.93850 0.89581 1.20784 0.82337 0.91864 0.82159 1.90458 1.58446 1.39954 1.61211 1.41940 1.58601 1.09014 1.11679 1.19633 1.42941 0.86503 0.96987 0.90435 1.26026 0.96602 1.02625 0.96065 1.69670 1.46520 1.29501 1.10485 0.84946 0.78303 0.77322 0.77877 1.19700 1.19431 1.19844 1.22317 1.01845 0.88889 0.94161 1.22217 0.88526 0.99707 0.96003 1.83687 0.96074 1.10854 1.66881 0.88786 0.89235 0.87789 0.81303 0.87193 0.91987 0.94969 0.90844 0.95319 0.91792 0.91886 0.86834 0.77034 0.91311 0.93733 0.88394 0.87018 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.46 71.24 0.75 -0.15 16 2 C 0.03 0.52 7.39 88.52 0.65 1.17 16 3 N -0.51 -12.58 10.54 -191.45 -2.02 -14.60 16 4 C 0.02 0.56 9.77 83.66 0.82 1.37 16 5 C -0.22 -4.39 5.51 24.64 0.14 -4.25 16 6 C 0.13 2.36 5.50 85.56 0.47 2.83 16 7 N -0.54 -12.04 4.70 -900.27 -4.23 -16.27 16 8 C 0.07 2.13 5.37 86.31 0.46 2.59 16 9 C 0.06 2.18 5.26 86.31 0.45 2.63 16 10 N -0.53 -17.75 4.45 -900.31 -4.00 -21.75 16 11 C 0.06 2.10 5.45 85.56 0.47 2.56 16 12 C 0.44 21.42 7.48 87.66 0.66 22.08 16 13 O -0.61 -34.48 13.91 -3.05 -0.04 -34.52 16 14 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 15 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 16 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 17 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 18 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 19 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 C 0.06 1.30 5.61 86.31 0.48 1.78 16 24 C 0.06 1.25 5.61 86.31 0.48 1.73 16 25 S 0.17 2.86 23.18 -56.49 -1.31 1.55 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.11 1.44 8.03 -2.38 -0.02 1.42 16 31 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 2.13 6.15 -2.38 -0.01 2.11 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 2.78 5.85 -2.39 -0.01 2.77 16 36 H 0.06 2.06 8.12 -2.39 -0.02 2.05 16 37 H 0.11 3.47 8.03 -2.39 -0.02 3.45 16 38 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 39 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 42 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 43 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -71.61 363.43 -3.51 -75.12 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.29 Total: 30.61 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 7.11 Total: 15.83 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -11.59 Total: -134.18 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.04 Total: -34.52 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.31 Total: 1.55 kcal Total: -71.61 -3.51 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108867271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.354 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds