Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47527 * 267.50134 * 3 2 1 5 5 N 1.46492 * 109.47264 * 180.02562 * 4 3 2 6 6 C 1.46509 * 120.00165 * 265.07352 * 5 4 3 7 7 C 1.50692 * 109.47287 * 285.92201 * 6 5 4 8 8 H 1.08006 * 120.00276 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99976 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00170 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47068 * 60.00428 * 11 9 7 13 13 H 1.48500 * 109.47158 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47085 * 300.00128 * 11 9 7 15 15 C 1.34776 * 120.00385 * 85.07895 * 5 4 3 16 16 O 1.21627 * 119.99538 * 6.55908 * 15 5 4 17 17 C 1.47321 * 120.00493 * 186.55798 * 15 5 4 18 18 C 1.40761 * 119.81392 * 324.84240 * 17 15 5 19 19 C 1.35580 * 120.92296 * 180.23887 * 18 17 15 20 20 C 1.40868 * 120.21700 * 359.49465 * 19 18 17 21 21 C 1.40445 * 120.98947 * 180.22882 * 20 19 18 22 22 C 1.36199 * 119.72337 * 180.02562 * 21 20 19 23 23 C 1.39280 * 120.97192 * 0.02562 * 22 21 20 24 24 C 1.36194 * 120.90936 * 359.97438 * 23 22 21 25 25 C 1.40415 * 119.67930 * 0.02562 * 24 23 22 26 26 C 1.39279 * 119.81581 * 144.57940 * 17 15 5 27 27 O 1.35444 * 120.35831 * 0.04657 * 26 17 15 28 28 H 1.09004 * 109.47011 * 147.50862 * 3 2 1 29 29 H 1.08997 * 109.47502 * 27.50974 * 3 2 1 30 30 H 1.09004 * 109.46380 * 60.00342 * 4 3 2 31 31 H 1.08997 * 109.47415 * 300.00893 * 4 3 2 32 32 H 1.09003 * 109.46520 * 45.92004 * 6 5 4 33 33 H 1.08997 * 109.46996 * 165.91544 * 6 5 4 34 34 H 0.96996 * 119.99889 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.53358 * 359.97438 * 18 17 15 36 36 H 1.08002 * 119.88606 * 179.77879 * 19 18 17 37 37 H 1.08003 * 120.14105 * 0.03183 * 21 20 19 38 38 H 1.07996 * 119.50810 * 180.02562 * 22 21 20 39 39 H 1.08007 * 119.54241 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.15741 * 180.02562 * 24 23 22 41 41 H 0.96705 * 113.99385 * 269.97485 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1180 0.0638 1.4411 5 7 4.5830 0.0650 1.4410 6 6 5.3166 -1.1925 1.6048 7 6 5.2308 -1.6409 3.0409 8 1 4.6847 -1.0482 3.7600 9 6 5.8493 -2.8077 3.4369 10 7 6.5147 -3.5291 2.5615 11 14 5.7435 -3.3632 5.2173 12 1 4.3202 -3.5680 5.5882 13 1 6.4871 -4.6378 5.3832 14 1 6.3396 -2.3250 6.0960 15 6 5.2559 1.2230 1.2904 16 8 4.6528 2.2791 1.2744 17 6 6.7219 1.2097 1.1453 18 6 7.4859 0.2578 1.8464 19 6 8.8366 0.2282 1.7332 20 6 9.4984 1.1497 0.8980 21 6 10.8964 1.1306 0.7650 22 6 11.5096 2.0339 -0.0493 23 6 10.7706 2.9805 -0.7547 24 6 9.4135 3.0284 -0.6499 25 6 8.7475 2.1126 0.1804 26 6 7.3436 2.1354 0.3109 27 8 6.6079 3.0485 -0.3670 28 1 2.9709 0.8677 -0.5521 29 1 2.9717 -0.9106 -0.4747 30 1 2.7551 -0.8032 1.9932 31 1 2.7542 0.9750 1.9158 32 1 4.8797 -1.9546 0.9594 33 1 6.3613 -1.0416 1.3330 34 1 6.9502 -4.3498 2.8402 35 1 6.9895 -0.4563 2.4867 36 1 9.4067 -0.5071 2.2815 37 1 11.4828 0.4026 1.3060 38 1 12.5848 2.0158 -0.1493 39 1 11.2806 3.6857 -1.3943 40 1 8.8524 3.7673 -1.2027 41 1 6.3217 2.7517 -1.2418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173064826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = 12.655262 kcal Electronic energy + Delta-G solvation = -26823.551290 eV Core-core repulsion = 23055.462727 eV Total energy + Delta-G solvation = -3768.088563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66395 -39.14939 -37.43507 -36.60395 -35.88879 -35.08394 -33.03367 -31.76303 -31.48126 -29.90296 -28.64362 -27.36334 -24.92978 -23.50020 -22.95462 -22.52787 -21.61175 -19.20896 -18.38305 -17.61506 -17.37541 -16.74109 -16.49335 -15.97399 -15.68105 -15.03594 -14.74604 -14.68567 -14.48011 -14.23278 -14.03645 -13.71214 -13.49593 -13.15675 -13.04699 -12.83892 -12.50296 -12.36045 -12.25290 -11.97823 -11.70983 -11.61702 -11.21932 -11.13407 -11.03647 -10.96409 -10.69004 -10.53712 -10.36985 -10.03918 -9.81472 -9.61927 -9.19092 -8.77107 -8.29377 -7.96811 -7.54208 -6.36163 -4.45416 0.56240 1.08817 2.06116 2.82793 2.92546 2.94609 3.16044 3.21725 3.25036 3.54313 3.66052 4.13797 4.19953 4.32322 4.38591 4.81991 4.92041 4.96432 5.02416 5.14212 5.29075 5.33785 5.36684 5.44064 5.51156 5.65569 5.70268 5.84409 6.03135 6.07336 6.18013 6.27085 6.29808 6.46309 6.53409 6.55518 6.69314 6.90885 6.93673 7.04723 7.15859 7.31548 7.57745 7.70519 7.81042 7.83188 8.13848 8.60834 8.81441 9.23556 10.68924 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.009171 B = 0.005094 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.386106 B = 5495.769898 C = 8083.878301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.222 3.778 3 C -0.045 4.045 4 C 0.128 3.872 5 N -0.590 5.590 6 C 0.206 3.794 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.071 3.929 10 N -0.882 5.882 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.556 3.444 16 O -0.545 6.545 17 C -0.147 4.147 18 C -0.073 4.073 19 C -0.134 4.134 20 C -0.020 4.020 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.135 4.135 24 C -0.088 4.088 25 C -0.091 4.091 26 C 0.165 3.835 27 O -0.474 6.474 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.269 0.731 35 H 0.190 0.810 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 6.324 -7.029 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.096 4.096 3 C -0.087 4.087 4 C 0.002 3.998 5 N -0.320 5.320 6 C 0.087 3.913 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.134 4.134 10 N -0.519 5.519 11 Si 0.722 3.278 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.345 3.655 16 O -0.424 6.424 17 C -0.151 4.151 18 C -0.090 4.090 19 C -0.152 4.152 20 C -0.020 4.020 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.153 4.153 24 C -0.106 4.106 25 C -0.092 4.092 26 C 0.118 3.882 27 O -0.284 6.284 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.207 0.793 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.748 7.019 -6.567 11.745 hybrid contribution 0.448 -0.864 0.519 1.103 sum 7.196 6.155 -6.047 11.236 Atomic orbital electron populations 1.81177 1.13064 1.09655 1.08834 1.29080 0.95099 0.92523 0.92925 1.19767 0.81404 1.05799 1.01683 1.21098 0.81248 1.04308 0.93108 1.48058 1.05384 1.08978 1.69603 1.20362 0.94143 0.79451 0.97330 1.21414 1.34866 1.07802 0.94470 0.91644 1.24947 0.94593 0.95880 0.98001 1.69907 1.32698 1.15030 1.34232 0.86579 0.78618 0.78156 0.84409 1.19972 1.21030 1.19857 1.18075 0.86657 0.83757 0.77018 1.90760 1.69643 1.30633 1.51395 1.20348 0.94284 0.97656 1.02767 1.22294 0.94072 0.95339 0.97314 1.20972 0.94807 0.99380 1.00031 1.18162 0.93437 0.94643 0.95762 1.21056 0.93251 0.99423 0.99339 1.20845 0.99823 0.95491 0.96902 1.20760 0.94087 0.99578 1.00855 1.20920 0.94617 0.97566 0.97463 1.18224 0.92436 0.98104 1.00446 1.18426 0.88119 0.87669 0.93977 1.84746 1.71055 1.39303 1.33271 0.87475 0.87062 0.88738 0.90136 0.94816 0.91042 0.92120 0.79336 0.85040 0.85425 0.86244 0.86260 0.85437 0.75722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.51 18.54 42.15 0.78 -6.72 16 2 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 3 C -0.05 -0.57 5.99 -29.52 -0.18 -0.75 16 4 C 0.13 2.02 5.29 -4.04 -0.02 2.00 16 5 N -0.59 -10.77 2.51 -176.37 -0.44 -11.21 16 6 C 0.21 4.21 4.67 -5.19 -0.02 4.18 16 7 C -0.55 -12.52 7.53 -34.45 -0.26 -12.78 16 8 H 0.07 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.88 -21.57 13.29 55.43 0.74 -20.83 16 11 Si 0.90 18.87 29.54 -169.99 -5.02 13.85 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.56 10.65 7.20 -12.57 -0.09 10.56 16 16 O -0.54 -11.46 15.53 -13.00 -0.20 -11.66 16 17 C -0.15 -2.67 5.50 -104.86 -0.58 -3.25 16 18 C -0.07 -1.33 7.27 -39.58 -0.29 -1.62 16 19 C -0.13 -2.17 9.72 -39.54 -0.38 -2.55 16 20 C -0.02 -0.30 5.74 -106.78 -0.61 -0.91 16 21 C -0.11 -1.40 9.76 -39.48 -0.39 -1.78 16 22 C -0.11 -1.22 9.95 -39.93 -0.40 -1.62 16 23 C -0.13 -1.48 9.95 -39.93 -0.40 -1.87 16 24 C -0.09 -1.10 9.56 -39.50 -0.38 -1.48 16 25 C -0.09 -1.38 5.75 -106.73 -0.61 -2.00 16 26 C 0.16 2.69 6.69 -38.14 -0.26 2.43 16 27 O -0.47 -7.05 11.30 -36.28 -0.41 -7.46 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.52 7.86 -51.93 -0.41 1.11 16 31 H 0.08 1.32 7.49 -51.93 -0.39 0.93 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.50 3.72 -52.73 -0.20 1.30 16 34 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 35 H 0.19 3.88 4.02 -52.49 -0.21 3.67 16 36 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.13 1.40 7.61 -52.49 -0.40 1.00 16 41 H 0.39 3.91 9.06 45.56 0.41 4.32 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -28.93 356.04 -8.17 -37.09 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.70 Total: 8.58 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -5.28 Total: -7.01 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 1.07 Total: -38.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.61 Total: -19.12 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.93 -8.17 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173064826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.749 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds