Wall clock time and date at job start Fri Apr 10 2020 18:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30723 * 120.00084 * 2 1 4 4 N 1.40100 * 119.99956 * 359.97438 * 3 2 1 5 5 C 1.34779 * 119.99772 * 179.97438 * 4 3 2 6 6 O 1.21984 * 120.00252 * 0.02562 * 5 4 3 7 7 C 1.40597 * 119.99840 * 180.02562 * 5 4 3 8 8 H 1.08001 * 120.00050 * 359.97438 * 7 5 4 9 9 C 1.40197 * 120.00425 * 180.02562 * 7 5 4 10 10 N 1.30613 * 119.99521 * 359.97438 * 9 7 5 11 11 Si 1.86792 * 120.00349 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47517 * 89.99714 * 11 9 7 13 13 H 1.48500 * 109.47091 * 209.99780 * 11 9 7 14 14 H 1.48503 * 109.47298 * 329.99267 * 11 9 7 15 15 C 1.46691 * 119.99878 * 180.02562 * 2 1 3 16 16 C 1.40305 * 120.12469 * 180.02562 * 15 2 1 17 17 C 1.36553 * 119.87459 * 180.29665 * 16 15 2 18 18 C 1.39263 * 120.12351 * 359.46498 * 17 16 15 19 19 O 1.35636 * 119.87485 * 180.25749 * 18 17 16 20 20 C 1.35848 * 117.99676 * 67.70188 * 19 18 17 21 21 C 1.38793 * 120.06568 * 5.84090 * 20 19 18 22 22 C 1.38123 * 119.93970 * 179.77081 * 21 20 19 23 23 C 1.38283 * 120.05824 * 0.50441 * 22 21 20 24 24 C 1.38279 * 120.12811 * 359.74587 * 23 22 21 25 25 C 1.38127 * 120.05773 * 0.02562 * 24 23 22 26 26 C 1.39264 * 120.25249 * 0.51252 * 18 17 16 27 27 C 1.36561 * 120.12361 * 359.76659 * 26 18 17 28 28 H 1.08996 * 109.47193 * 269.99683 * 1 2 3 29 29 H 1.09004 * 109.47194 * 29.99849 * 1 2 3 30 30 H 1.09004 * 109.47456 * 150.00011 * 1 2 3 31 31 H 0.97000 * 120.00271 * 0.02562 * 4 3 2 32 32 H 0.96993 * 120.00152 * 180.02562 * 10 9 7 33 33 H 1.07998 * 120.05811 * 0.02562 * 16 15 2 34 34 H 1.08005 * 119.93334 * 179.71768 * 17 16 15 35 35 H 1.08002 * 120.02544 * 0.02563 * 21 20 19 36 36 H 1.08002 * 119.96606 * 180.25657 * 22 21 20 37 37 H 1.07999 * 119.93404 * 179.72445 * 23 22 21 38 38 H 1.07998 * 119.97246 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.03183 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.94467 * 179.74366 * 26 18 17 41 41 H 1.07995 * 120.06717 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1606 1.1321 0.0000 4 7 1.4601 2.3454 -0.0005 5 6 2.1341 3.5126 0.0000 6 8 3.3539 3.5126 0.0005 7 6 1.4311 4.7302 0.0000 8 1 0.3511 4.7302 -0.0009 9 6 2.1320 5.9444 0.0000 10 7 3.4382 5.9443 0.0005 11 14 1.1981 7.5621 0.0007 12 1 0.9510 7.9905 1.4010 13 1 2.0004 8.5972 -0.6994 14 1 -0.0997 7.3847 -0.6990 15 6 2.2404 -1.2704 -0.0006 16 6 3.6435 -1.2735 0.0000 17 6 4.3210 -2.4590 -0.0067 18 6 3.6221 -3.6635 -0.0028 19 8 4.3002 -4.8382 -0.0041 20 6 5.0175 -5.1618 1.1033 21 6 4.9456 -4.3632 2.2362 22 6 5.6722 -4.6972 3.3623 23 6 6.4789 -5.8203 3.3581 24 6 6.5565 -6.6150 2.2291 25 6 5.8284 -6.2883 1.1018 26 6 2.2294 -3.6666 -0.0028 27 6 1.5415 -2.4870 -0.0019 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.4901 2.3454 -0.0005 32 1 3.9232 6.7843 0.0009 33 1 4.1864 -0.3399 0.0012 34 1 5.4011 -2.4625 -0.0109 35 1 4.3188 -3.4836 2.2385 36 1 5.6134 -4.0783 4.2455 37 1 7.0497 -6.0772 4.2383 38 1 7.1877 -7.4913 2.2285 39 1 5.8896 -6.9090 0.2201 40 1 1.6924 -4.6036 -0.0039 41 1 0.4615 -2.4904 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254620594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:34 Heat of formation + Delta-G solvation = 28.749786 kcal Electronic energy + Delta-G solvation = -25086.100654 eV Core-core repulsion = 21318.710003 eV Total energy + Delta-G solvation = -3767.390652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01826 -39.03011 -37.98756 -37.34491 -35.59848 -32.82387 -31.98952 -31.36454 -31.14252 -30.30503 -28.84880 -28.21298 -26.39825 -24.00525 -22.95728 -22.37113 -22.01369 -20.61868 -18.99198 -18.73249 -17.90772 -17.02571 -16.34978 -16.05898 -15.78551 -15.52352 -14.89315 -14.71502 -14.47010 -14.13735 -14.08736 -13.74834 -13.68296 -13.59297 -13.44790 -12.81572 -12.75372 -12.45954 -12.23118 -12.05568 -11.84504 -11.70172 -11.41948 -11.27726 -11.15116 -10.86071 -10.69824 -10.63143 -10.41024 -9.52556 -9.23335 -9.12544 -9.08683 -8.84942 -8.37019 -7.82538 -7.26734 -6.44996 -5.00749 0.75117 1.12667 1.22737 1.42738 2.56340 3.01424 3.07528 3.11611 3.16911 3.57293 3.65522 3.91769 4.04454 4.39280 4.64608 4.70937 4.75640 4.86756 4.88389 4.95299 5.13548 5.17845 5.32787 5.33533 5.38599 5.50175 5.61243 5.67165 5.73004 5.75621 5.79841 5.99218 6.04433 6.11361 6.20218 6.31370 6.32211 6.37177 6.57305 6.59006 6.80388 6.83570 7.15697 7.50197 7.77647 7.92833 8.58816 8.71040 9.22644 10.33795 10.58285 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002203 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.061180 B =12706.054459 C =13507.663973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 N -0.179 5.179 4 N -0.583 5.583 5 C 0.555 3.445 6 O -0.553 6.553 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.087 3.913 10 N -0.743 5.743 11 Si 0.918 3.082 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.262 1.262 15 C -0.003 4.003 16 C -0.079 4.079 17 C -0.134 4.134 18 C 0.070 3.930 19 O -0.257 6.257 20 C 0.124 3.876 21 C -0.192 4.192 22 C -0.082 4.082 23 C -0.157 4.157 24 C -0.086 4.086 25 C -0.150 4.150 26 C -0.119 4.119 27 C -0.098 4.098 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.371 0.629 32 H 0.275 0.725 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -21.472 3.609 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 N 0.010 4.990 4 N -0.330 5.330 5 C 0.364 3.636 6 O -0.432 6.432 7 C -0.572 4.572 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.370 5.370 11 Si 0.741 3.259 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.186 1.186 15 C -0.006 4.006 16 C -0.099 4.099 17 C -0.152 4.152 18 C 0.027 3.973 19 O -0.168 6.168 20 C 0.081 3.919 21 C -0.211 4.211 22 C -0.100 4.100 23 C -0.175 4.175 24 C -0.104 4.104 25 C -0.168 4.168 26 C -0.137 4.137 27 C -0.119 4.119 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.208 0.792 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.439 -20.800 3.431 21.085 hybrid contribution -1.802 0.730 0.047 1.945 sum -1.364 -20.069 3.478 20.414 Atomic orbital electron populations 1.21088 0.92803 1.03160 1.02714 1.22724 0.93095 0.91320 1.08464 1.74967 1.27041 0.92511 1.04526 1.48150 1.07767 1.01698 1.75421 1.16812 0.87898 0.80354 0.78504 1.90729 1.13404 1.85241 1.53841 1.19722 0.94468 0.89607 1.53379 0.91084 1.25776 0.94703 1.00730 0.92439 1.70011 1.07363 1.28145 1.31471 0.86202 0.80114 0.80408 0.79146 1.19381 1.20090 1.18616 1.18513 0.92615 0.90690 0.98745 1.21219 0.93484 0.98467 0.96704 1.21151 1.00640 0.91658 1.01776 1.18888 0.90495 0.83713 1.04205 1.84297 1.60138 1.36603 1.35792 1.19249 0.92396 0.94738 0.85556 1.21457 1.04094 1.01913 0.93620 1.21015 0.95027 0.96414 0.97539 1.21105 1.01248 0.96333 0.98838 1.20947 0.97946 0.99220 0.92301 1.20442 0.98905 0.97362 1.00122 1.20701 0.92019 0.98948 1.02027 1.20918 1.00130 0.90498 1.00338 0.90872 0.91527 0.90695 0.79199 0.91401 0.83813 0.85328 0.84951 0.85644 0.85925 0.85378 0.85166 0.85139 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.04 36.00 0.33 -1.46 16 2 C 0.03 0.54 7.10 -79.65 -0.57 -0.03 16 3 N -0.18 -3.94 10.19 35.07 0.36 -3.59 16 4 N -0.58 -13.72 6.11 28.90 0.18 -13.55 16 5 C 0.56 15.96 7.65 -15.37 -0.12 15.84 16 6 O -0.55 -18.25 15.19 4.93 0.07 -18.18 16 7 C -0.54 -14.60 9.25 -37.96 -0.35 -14.95 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.09 2.34 5.50 -17.33 -0.10 2.25 16 10 N -0.74 -21.52 11.70 55.56 0.65 -20.87 16 11 Si 0.92 19.10 29.56 -169.99 -5.02 14.07 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 14 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 15 C 0.00 -0.05 5.88 -104.93 -0.62 -0.67 16 16 C -0.08 -1.23 9.54 -39.41 -0.38 -1.60 16 17 C -0.13 -1.84 8.30 -39.81 -0.33 -2.17 16 18 C 0.07 0.91 4.73 -38.82 -0.18 0.73 16 19 O -0.26 -3.32 9.98 -2.64 -0.03 -3.35 16 20 C 0.12 1.48 6.54 -39.17 -0.26 1.22 16 21 C -0.19 -2.23 8.79 -39.42 -0.35 -2.58 16 22 C -0.08 -0.82 10.04 -39.61 -0.40 -1.21 16 23 C -0.16 -1.38 10.04 -39.55 -0.40 -1.78 16 24 C -0.09 -0.74 10.04 -39.61 -0.40 -1.14 16 25 C -0.15 -1.51 9.99 -39.41 -0.39 -1.90 16 26 C -0.12 -1.37 9.93 -39.81 -0.40 -1.76 16 27 C -0.10 -1.16 9.32 -39.41 -0.37 -1.53 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.89 6.37 -51.93 -0.33 0.56 16 30 H 0.07 0.75 6.45 -51.93 -0.34 0.42 16 31 H 0.37 7.35 6.41 -182.60 -1.17 6.18 16 32 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 33 H 0.14 2.55 7.55 -52.49 -0.40 2.15 16 34 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.13 1.61 6.19 -52.49 -0.33 1.28 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.14 1.23 6.35 -52.49 -0.33 0.90 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -34.80 357.69 -9.06 -43.86 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.40 Total: 8.95 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -5.26 Total: -12.75 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 1.18 Total: -38.00 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.05 Total: -21.53 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.80 -9.06 -43.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254620594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.612 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds