Wall clock time and date at job start Fri Apr 10 2020 18:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30723 * 120.00084 * 2 1 4 4 N 1.40100 * 119.99956 * 359.97438 * 3 2 1 5 5 C 1.34779 * 119.99772 * 179.97438 * 4 3 2 6 6 O 1.21984 * 120.00252 * 0.02562 * 5 4 3 7 7 C 1.40597 * 119.99840 * 180.02562 * 5 4 3 8 8 H 1.08001 * 120.00050 * 359.97438 * 7 5 4 9 9 C 1.40197 * 120.00425 * 180.02562 * 7 5 4 10 10 N 1.30613 * 119.99521 * 359.97438 * 9 7 5 11 11 Si 1.86792 * 120.00349 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47517 * 89.99714 * 11 9 7 13 13 H 1.48500 * 109.47091 * 209.99780 * 11 9 7 14 14 H 1.48503 * 109.47298 * 329.99267 * 11 9 7 15 15 C 1.46691 * 119.99878 * 180.02562 * 2 1 3 16 16 C 1.40305 * 120.12469 * 180.02562 * 15 2 1 17 17 C 1.36553 * 119.87459 * 180.29665 * 16 15 2 18 18 C 1.39263 * 120.12351 * 359.46498 * 17 16 15 19 19 O 1.35636 * 119.87485 * 180.25749 * 18 17 16 20 20 C 1.35848 * 117.99676 * 67.70188 * 19 18 17 21 21 C 1.38793 * 120.06568 * 5.84090 * 20 19 18 22 22 C 1.38123 * 119.93970 * 179.77081 * 21 20 19 23 23 C 1.38283 * 120.05824 * 0.50441 * 22 21 20 24 24 C 1.38279 * 120.12811 * 359.74587 * 23 22 21 25 25 C 1.38127 * 120.05773 * 0.02562 * 24 23 22 26 26 C 1.39264 * 120.25249 * 0.51252 * 18 17 16 27 27 C 1.36561 * 120.12361 * 359.76659 * 26 18 17 28 28 H 1.08996 * 109.47193 * 269.99683 * 1 2 3 29 29 H 1.09004 * 109.47194 * 29.99849 * 1 2 3 30 30 H 1.09004 * 109.47456 * 150.00011 * 1 2 3 31 31 H 0.97000 * 120.00271 * 0.02562 * 4 3 2 32 32 H 0.96993 * 120.00152 * 180.02562 * 10 9 7 33 33 H 1.07998 * 120.05811 * 0.02562 * 16 15 2 34 34 H 1.08005 * 119.93334 * 179.71768 * 17 16 15 35 35 H 1.08002 * 120.02544 * 0.02563 * 21 20 19 36 36 H 1.08002 * 119.96606 * 180.25657 * 22 21 20 37 37 H 1.07999 * 119.93404 * 179.72445 * 23 22 21 38 38 H 1.07998 * 119.97246 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.03183 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.94467 * 179.74366 * 26 18 17 41 41 H 1.07995 * 120.06717 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1606 1.1321 0.0000 4 7 1.4601 2.3454 -0.0005 5 6 2.1341 3.5126 0.0000 6 8 3.3539 3.5126 0.0005 7 6 1.4311 4.7302 0.0000 8 1 0.3511 4.7302 -0.0009 9 6 2.1320 5.9444 0.0000 10 7 3.4382 5.9443 0.0005 11 14 1.1981 7.5621 0.0007 12 1 0.9510 7.9905 1.4010 13 1 2.0004 8.5972 -0.6994 14 1 -0.0997 7.3847 -0.6990 15 6 2.2404 -1.2704 -0.0006 16 6 3.6435 -1.2735 0.0000 17 6 4.3210 -2.4590 -0.0067 18 6 3.6221 -3.6635 -0.0028 19 8 4.3002 -4.8382 -0.0041 20 6 5.0175 -5.1618 1.1033 21 6 4.9456 -4.3632 2.2362 22 6 5.6722 -4.6972 3.3623 23 6 6.4789 -5.8203 3.3581 24 6 6.5565 -6.6150 2.2291 25 6 5.8284 -6.2883 1.1018 26 6 2.2294 -3.6666 -0.0028 27 6 1.5415 -2.4870 -0.0019 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.4901 2.3454 -0.0005 32 1 3.9232 6.7843 0.0009 33 1 4.1864 -0.3399 0.0012 34 1 5.4011 -2.4625 -0.0109 35 1 4.3188 -3.4836 2.2385 36 1 5.6134 -4.0783 4.2455 37 1 7.0497 -6.0772 4.2383 38 1 7.1877 -7.4913 2.2285 39 1 5.8896 -6.9090 0.2201 40 1 1.6924 -4.6036 -0.0039 41 1 0.4615 -2.4904 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254620594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:33 Heat of formation + Delta-G solvation = 6.534607 kcal Electronic energy + Delta-G solvation = -25087.063977 eV Core-core repulsion = 21318.710003 eV Total energy + Delta-G solvation = -3768.353974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98332 -40.16250 -39.54161 -38.53146 -37.18911 -34.79966 -33.61020 -32.45671 -31.97330 -31.26536 -30.22495 -29.42344 -28.24042 -25.10433 -23.87022 -23.33981 -23.12490 -22.21213 -20.52273 -19.70881 -19.61956 -17.96195 -17.77975 -17.56635 -16.89431 -16.82087 -16.15169 -15.79857 -15.65824 -15.52070 -15.30806 -14.87108 -14.74514 -14.67702 -14.47071 -14.43793 -14.37285 -13.48230 -13.32989 -13.31731 -12.98450 -12.87658 -12.78745 -12.71027 -12.52911 -12.29517 -12.04526 -11.91981 -11.87912 -11.01705 -10.92618 -10.21595 -10.17687 -10.01406 -9.97515 -9.30887 -8.84036 -8.44812 -7.12095 -0.40538 0.32084 0.38888 0.42257 1.25684 1.37768 1.43582 1.56680 2.04978 2.14204 2.33887 2.40451 2.78699 2.82607 3.54056 3.62288 3.77975 3.81566 3.89442 3.97115 4.18247 4.20632 4.26986 4.30965 4.40299 4.47237 4.52045 4.61073 4.66368 4.81960 4.93559 5.01046 5.05962 5.13349 5.17736 5.25074 5.33801 5.37875 5.46518 5.54723 5.57463 5.62719 5.78945 5.94138 6.00734 6.53547 6.65280 6.92213 7.42934 8.39072 8.56616 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002203 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.061180 B =12706.054459 C =13507.663973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 N -0.263 5.263 4 N -0.591 5.591 5 C 0.542 3.458 6 O -0.618 6.618 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.028 3.972 10 N -0.801 5.801 11 Si 1.011 2.989 12 H -0.257 1.257 13 H -0.270 1.270 14 H -0.244 1.244 15 C -0.040 4.040 16 C -0.090 4.090 17 C -0.142 4.142 18 C 0.083 3.917 19 O -0.265 6.265 20 C 0.099 3.901 21 C -0.209 4.209 22 C -0.094 4.094 23 C -0.154 4.154 24 C -0.082 4.082 25 C -0.155 4.155 26 C -0.115 4.115 27 C -0.067 4.067 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.385 0.615 32 H 0.281 0.719 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.165 0.835 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -24.249 4.171 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 N -0.072 5.072 4 N -0.337 5.337 5 C 0.352 3.648 6 O -0.503 6.503 7 C -0.596 4.596 8 H 0.114 0.886 9 C -0.190 4.190 10 N -0.429 5.429 11 Si 0.828 3.172 12 H -0.182 1.182 13 H -0.195 1.195 14 H -0.167 1.167 15 C -0.042 4.042 16 C -0.110 4.110 17 C -0.160 4.160 18 C 0.039 3.961 19 O -0.177 6.177 20 C 0.057 3.943 21 C -0.227 4.227 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.100 4.100 25 C -0.174 4.174 26 C -0.133 4.133 27 C -0.087 4.087 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.071 -23.637 3.997 24.062 hybrid contribution -0.956 1.081 -0.070 1.444 sum -3.027 -22.557 3.927 23.095 Atomic orbital electron populations 1.21288 0.89299 1.04963 1.04619 1.23595 0.95716 0.90624 1.01185 1.75062 1.28229 0.93068 1.10847 1.47302 1.07964 1.01625 1.76809 1.17213 0.87408 0.82299 0.77897 1.90659 1.15910 1.86814 1.56930 1.20287 0.95793 0.89982 1.53576 0.88589 1.27187 0.95562 1.05462 0.90811 1.70189 1.10023 1.29813 1.32838 0.84838 0.78748 0.73834 0.79776 1.18184 1.19478 1.16670 1.18660 0.92282 0.91261 1.02020 1.21022 0.94377 0.97710 0.97918 1.21087 1.00700 0.91685 1.02564 1.19082 0.91381 0.83402 1.02228 1.84253 1.60638 1.36152 1.36666 1.19478 0.93596 0.95935 0.85288 1.21455 1.04958 1.01800 0.94528 1.21270 0.95114 0.97290 0.97479 1.21485 1.00409 0.95401 0.99912 1.21366 0.97341 0.99894 0.91405 1.20759 0.98427 0.96851 1.01315 1.21079 0.91283 1.00261 1.00650 1.21263 1.01860 0.88702 0.96920 0.88683 0.91937 0.86616 0.77559 0.90825 0.87423 0.85533 0.86377 0.84500 0.83268 0.82179 0.83811 0.81781 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.04 71.24 0.64 -2.66 16 2 C 0.08 2.64 7.10 44.93 0.32 2.96 16 3 N -0.26 -12.35 10.19 -42.95 -0.44 -12.79 16 4 N -0.59 -29.34 6.11 -180.56 -1.10 -30.44 16 5 C 0.54 33.19 7.65 84.82 0.65 33.84 16 6 O -0.62 -44.16 15.19 -5.26 -0.08 -44.24 16 7 C -0.56 -31.70 9.25 23.32 0.22 -31.48 16 8 H 0.10 4.71 7.85 -2.91 -0.02 4.69 16 9 C 0.03 1.56 5.50 85.35 0.47 2.03 16 10 N -0.80 -48.93 11.70 21.86 0.26 -48.67 16 11 Si 1.01 39.49 29.56 68.60 2.03 41.52 16 12 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 13 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 14 H -0.24 -8.71 7.11 99.48 0.71 -8.00 16 15 C -0.04 -1.19 5.88 -20.06 -0.12 -1.31 16 16 C -0.09 -3.00 9.54 22.38 0.21 -2.78 16 17 C -0.14 -4.07 8.30 22.12 0.18 -3.89 16 18 C 0.08 2.06 4.73 22.76 0.11 2.17 16 19 O -0.26 -6.57 9.98 -32.36 -0.32 -6.90 16 20 C 0.10 2.28 6.54 22.54 0.15 2.43 16 21 C -0.21 -4.80 8.79 22.38 0.20 -4.60 16 22 C -0.09 -1.77 10.04 22.25 0.22 -1.54 16 23 C -0.15 -2.31 10.04 22.29 0.22 -2.09 16 24 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 25 C -0.16 -2.82 9.99 22.38 0.22 -2.60 16 26 C -0.11 -2.29 9.93 22.12 0.22 -2.07 16 27 C -0.07 -1.37 9.32 22.38 0.21 -1.16 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.56 6.37 -2.38 -0.02 1.54 16 30 H 0.12 1.75 6.45 -2.38 -0.02 1.73 16 31 H 0.38 15.78 6.41 -213.32 -1.37 14.41 16 32 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 33 H 0.11 4.36 7.55 -2.91 -0.02 4.34 16 34 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.12 2.96 6.19 -2.91 -0.02 2.95 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.18 2.14 6.35 -2.91 -0.02 2.12 16 Total: -1.00 -85.05 357.69 4.40 -80.65 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.29 Total: 34.58 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.35 Total: -13.71 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -1.28 Total: -91.90 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.40 Total: -51.14 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -85.05 4.40 -80.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254620594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.183 kcal (2) G-P(sol) polarization free energy of solvation -85.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds