Wall clock time and date at job start Fri Apr 10 2020 18:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46616 * 175.92975 * 3 2 1 5 5 C 1.37101 * 120.00097 * 269.99646 * 4 3 2 6 6 H 1.07995 * 119.99743 * 134.60065 * 5 4 3 7 7 C 1.38944 * 119.99869 * 314.60082 * 5 4 3 8 8 N 1.31417 * 119.99613 * 169.87365 * 7 5 4 9 9 Si 1.86794 * 120.00257 * 349.87692 * 7 5 4 10 10 H 1.48498 * 109.47540 * 92.07402 * 9 7 5 11 11 H 1.48505 * 109.47390 * 212.07275 * 9 7 5 12 12 H 1.48494 * 109.47248 * 332.07189 * 9 7 5 13 13 C 1.34784 * 119.99582 * 90.00245 * 4 3 2 14 14 O 1.21286 * 120.00483 * 5.52277 * 13 4 3 15 15 C 1.50704 * 119.99391 * 185.52216 * 13 4 3 16 16 H 1.08998 * 108.70132 * 34.02727 * 15 13 4 17 17 C 1.54551 * 108.75675 * 275.92130 * 15 13 4 18 18 S 1.84215 * 101.32878 * 262.12922 * 17 15 13 19 19 C 1.84327 * 93.82460 * 327.58593 * 18 17 15 20 20 N 1.45501 * 108.75126 * 152.27858 * 15 13 4 21 21 C 1.34777 * 122.43472 * 302.05281 * 20 15 13 22 22 O 1.21286 * 119.99714 * 4.88949 * 21 20 15 23 23 C 1.50693 * 120.00254 * 185.16800 * 21 20 15 24 24 H 1.09000 * 109.47007 * 25.22136 * 23 21 20 25 25 C 1.52995 * 109.47281 * 265.21987 * 23 21 20 26 26 C 1.53003 * 109.47136 * 145.22300 * 23 21 20 27 27 C 1.53002 * 109.47156 * 185.00054 * 26 23 21 28 28 H 4.40638 * 5.51397 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47460 * 55.93439 * 3 2 1 30 30 H 1.09000 * 109.47268 * 295.92350 * 3 2 1 31 31 H 0.97006 * 119.99477 * 180.02562 * 8 7 5 32 32 H 1.09002 * 111.05166 * 20.13981 * 17 15 13 33 33 H 1.08996 * 111.05458 * 144.07692 * 17 15 13 34 34 H 1.09001 * 110.89993 * 275.42986 * 19 18 17 35 35 H 1.09005 * 110.77239 * 151.92760 * 19 18 17 36 36 H 1.08999 * 109.47176 * 303.31331 * 25 23 21 37 37 H 1.08998 * 109.46887 * 63.31061 * 25 23 21 38 38 H 1.09005 * 109.47433 * 183.31145 * 25 23 21 39 39 H 1.09001 * 109.46711 * 304.99372 * 26 23 21 40 40 H 1.08993 * 109.47272 * 65.00079 * 26 23 21 41 41 H 1.09007 * 109.46977 * 59.99661 * 27 26 23 42 42 H 1.09003 * 109.47148 * 179.97438 * 27 26 23 43 43 H 1.08999 * 109.47010 * 300.00025 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1335 1.3787 -0.0980 5 6 3.3618 1.9392 -1.3282 6 1 3.0130 2.9393 -1.5390 7 6 4.0419 1.2205 -2.3037 8 7 4.0887 1.6697 -3.5378 9 14 4.8895 -0.3841 -1.8610 10 1 3.9572 -1.5166 -2.0917 11 1 6.0969 -0.5564 -2.7083 12 1 5.2886 -0.3550 -0.4310 13 6 3.3578 2.0953 1.0212 14 8 3.2527 1.5697 2.1092 15 6 3.7392 3.5499 0.9207 16 1 3.2300 3.9861 0.0614 17 6 5.2647 3.6490 0.6933 18 16 5.8654 3.9730 2.4043 19 6 4.3580 4.9177 2.8870 20 7 3.2944 4.2343 2.1252 21 6 2.0041 4.2480 2.5141 22 8 1.1793 3.6029 1.9020 23 6 1.5849 5.0698 3.7057 24 1 2.2868 5.8920 3.8450 25 6 1.5773 4.1882 4.9560 26 6 0.1815 5.6318 3.4694 27 6 -0.1943 6.5661 4.6212 28 1 -1.0503 -0.0005 -0.0002 29 1 3.0096 -0.5748 -0.8512 30 1 3.0095 -0.4484 0.9242 31 1 4.5632 1.1678 -4.2189 32 1 5.6650 2.7109 0.3088 33 1 5.5084 4.4778 0.0286 34 1 4.4402 5.9618 2.5849 35 1 4.1783 4.8374 3.9591 36 1 0.9200 3.3339 4.7942 37 1 2.5886 3.8354 5.1579 38 1 1.2178 4.7672 5.8068 39 1 0.1656 6.1868 2.5314 40 1 -0.5345 4.8116 3.4186 41 1 0.5218 7.3864 4.6721 42 1 -1.1939 6.9668 4.4527 43 1 -0.1783 6.0112 5.5592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281488452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:41 Heat of formation + Delta-G solvation = 9.106270 kcal Electronic energy + Delta-G solvation = -26805.130192 eV Core-core repulsion = 23172.331684 eV Total energy + Delta-G solvation = -3632.798507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31937 -38.69576 -36.13994 -35.26633 -34.99545 -32.70053 -31.80099 -31.02965 -29.51402 -27.36930 -26.70984 -25.49026 -24.94772 -23.34421 -21.40217 -19.53247 -18.82951 -18.23065 -17.40290 -17.17804 -16.68661 -16.12506 -15.42985 -15.19306 -15.10829 -14.66910 -14.31894 -14.18395 -13.76918 -13.47804 -13.33879 -13.16857 -13.06589 -12.71010 -12.56026 -12.36604 -12.18477 -12.07387 -11.82815 -11.76282 -11.67659 -11.53218 -11.09804 -10.84173 -10.75538 -10.74079 -10.26365 -10.16861 -9.76654 -9.46827 -9.36084 -9.25979 -9.05729 -8.28398 -7.88238 -7.64771 -6.53009 -4.29029 1.77013 2.18888 2.79094 2.96922 2.99250 3.13404 3.18578 3.36216 3.60576 3.64203 4.02832 4.38220 4.52408 4.69393 4.79282 4.88417 4.89758 5.01126 5.13530 5.19362 5.26135 5.29642 5.39394 5.40114 5.51602 5.69215 5.78100 5.83843 5.87448 5.93394 5.98351 6.00958 6.02440 6.23933 6.25225 6.26627 6.49602 6.60912 7.29620 7.43790 7.98798 8.12359 8.36597 8.41155 8.85097 9.20159 9.55523 10.56391 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.005300 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.123056 B = 5281.903516 C = 6366.177551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C 0.204 3.796 4 N -0.464 5.464 5 C -0.347 4.347 6 H 0.102 0.898 7 C 0.071 3.929 8 N -0.863 5.863 9 Si 0.873 3.127 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.257 1.257 13 C 0.503 3.497 14 O -0.567 6.567 15 C 0.129 3.871 16 H 0.113 0.887 17 C -0.038 4.038 18 S -0.279 6.279 19 C 0.158 3.842 20 N -0.601 5.601 21 C 0.531 3.469 22 O -0.510 6.510 23 C -0.103 4.103 24 H 0.086 0.914 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.151 4.151 28 H 0.211 0.789 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.277 0.723 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 8.580 11.751 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.167 4.167 3 C 0.082 3.918 4 N -0.186 5.186 5 C -0.474 4.474 6 H 0.119 0.881 7 C -0.136 4.136 8 N -0.498 5.498 9 Si 0.700 3.300 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.181 1.181 13 C 0.290 3.710 14 O -0.448 6.448 15 C 0.021 3.979 16 H 0.130 0.870 17 C -0.187 4.187 18 S -0.054 6.054 19 C -0.076 4.076 20 N -0.337 5.337 21 C 0.318 3.682 22 O -0.383 6.383 23 C -0.125 4.125 24 H 0.104 0.896 25 C -0.198 4.198 26 C -0.146 4.146 27 C -0.208 4.208 28 H 0.227 0.773 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.311 7.629 12.360 14.528 hybrid contribution -0.703 -0.562 -0.858 1.243 sum -1.015 7.067 11.503 13.538 Atomic orbital electron populations 1.24596 0.95579 1.00873 1.03118 1.23630 0.94837 0.99712 0.98476 1.18639 0.84020 0.87185 1.01975 1.43533 1.57926 1.11009 1.06134 1.19051 1.36942 1.03264 0.88143 0.88070 1.25385 0.95263 0.98144 0.94856 1.69662 1.39805 1.39494 1.00800 0.86977 0.79594 0.83499 0.79898 1.19712 1.21054 1.18144 1.20195 0.78711 0.87976 0.84126 1.90553 1.54927 1.71620 1.27678 1.21015 0.95158 0.93371 0.88334 0.86994 1.24373 0.93064 1.07852 0.93378 1.88202 1.26932 1.72402 1.17820 1.24218 0.86042 0.97330 1.00024 1.48350 1.07168 1.52847 1.25370 1.20453 0.80573 0.81742 0.85449 1.90771 1.50376 1.41957 1.55204 1.21310 0.99142 0.98057 0.93994 0.89568 1.21752 1.02901 0.99714 0.95433 1.21383 0.94797 0.99574 0.98839 1.21826 1.01275 0.99201 0.98524 0.77251 0.89854 0.88956 0.91285 0.85472 0.87268 0.88751 0.87248 0.91614 0.92150 0.91329 0.91691 0.90663 0.92772 0.92511 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.64 19.25 29.55 0.57 -4.07 16 2 C -0.17 -3.87 13.67 -37.12 -0.51 -4.38 16 3 C 0.20 4.84 4.58 -6.83 -0.03 4.80 16 4 N -0.46 -11.42 2.06 -117.93 -0.24 -11.66 16 5 C -0.35 -8.84 8.77 -14.93 -0.13 -8.97 16 6 H 0.10 2.73 6.83 -52.49 -0.36 2.37 16 7 C 0.07 1.82 5.44 -17.47 -0.09 1.73 16 8 N -0.86 -23.05 13.96 55.50 0.77 -22.28 16 9 Si 0.87 19.79 24.75 -169.99 -4.21 15.58 16 10 H -0.27 -6.00 6.74 56.52 0.38 -5.62 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.26 -5.83 7.03 56.52 0.40 -5.43 16 13 C 0.50 11.89 5.23 -10.98 -0.06 11.84 16 14 O -0.57 -14.54 15.63 4.20 0.07 -14.47 16 15 C 0.13 2.54 2.30 -68.80 -0.16 2.38 16 16 H 0.11 2.33 6.55 -51.93 -0.34 1.99 16 17 C -0.04 -0.64 6.82 37.97 0.26 -0.38 16 18 S -0.28 -4.33 23.44 -107.50 -2.52 -6.85 16 19 C 0.16 2.05 6.65 60.45 0.40 2.45 16 20 N -0.60 -10.27 2.70 -169.02 -0.46 -10.73 16 21 C 0.53 9.44 6.15 -10.99 -0.07 9.37 16 22 O -0.51 -11.48 15.36 4.20 0.06 -11.41 16 23 C -0.10 -1.29 2.00 -91.78 -0.18 -1.48 16 24 H 0.09 0.84 6.90 -51.93 -0.36 0.49 16 25 C -0.14 -1.66 8.97 37.16 0.33 -1.33 16 26 C -0.11 -1.27 4.97 -26.73 -0.13 -1.40 16 27 C -0.15 -1.29 9.67 37.16 0.36 -0.93 16 28 H 0.21 3.37 7.80 -54.08 -0.42 2.95 16 29 H 0.08 1.95 3.34 -51.93 -0.17 1.78 16 30 H 0.09 2.13 7.35 -51.93 -0.38 1.75 16 31 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.13 2.37 7.78 -51.93 -0.40 1.97 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.22 6.75 -51.93 -0.35 0.87 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.73 7.52 -51.93 -0.39 0.34 16 38 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.01 8.01 -51.93 -0.42 0.60 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.46 6.49 -51.93 -0.34 0.13 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -32.63 362.17 -6.47 -39.09 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.96 Total: 7.65 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 0.56 Total: 9.63 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.08 Total: -44.67 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.13 Total: -25.88 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.21 Total: 15.58 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.52 Total: -6.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.63 -6.47 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.200 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds