Wall clock time and date at job start Fri Apr 10 2020 18:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46616 * 175.92975 * 3 2 1 5 5 C 1.37101 * 120.00097 * 269.99646 * 4 3 2 6 6 H 1.07995 * 119.99743 * 134.60065 * 5 4 3 7 7 C 1.38944 * 119.99869 * 314.60082 * 5 4 3 8 8 N 1.31417 * 119.99613 * 169.87365 * 7 5 4 9 9 Si 1.86794 * 120.00257 * 349.87692 * 7 5 4 10 10 H 1.48498 * 109.47540 * 92.07402 * 9 7 5 11 11 H 1.48505 * 109.47390 * 212.07275 * 9 7 5 12 12 H 1.48494 * 109.47248 * 332.07189 * 9 7 5 13 13 C 1.34784 * 119.99582 * 90.00245 * 4 3 2 14 14 O 1.21286 * 120.00483 * 5.52277 * 13 4 3 15 15 C 1.50704 * 119.99391 * 185.52216 * 13 4 3 16 16 H 1.08998 * 108.70132 * 34.02727 * 15 13 4 17 17 C 1.54551 * 108.75675 * 275.92130 * 15 13 4 18 18 S 1.84215 * 101.32878 * 262.12922 * 17 15 13 19 19 C 1.84327 * 93.82460 * 327.58593 * 18 17 15 20 20 N 1.45501 * 108.75126 * 152.27858 * 15 13 4 21 21 C 1.34777 * 122.43472 * 302.05281 * 20 15 13 22 22 O 1.21286 * 119.99714 * 4.88949 * 21 20 15 23 23 C 1.50693 * 120.00254 * 185.16800 * 21 20 15 24 24 H 1.09000 * 109.47007 * 25.22136 * 23 21 20 25 25 C 1.52995 * 109.47281 * 265.21987 * 23 21 20 26 26 C 1.53003 * 109.47136 * 145.22300 * 23 21 20 27 27 C 1.53002 * 109.47156 * 185.00054 * 26 23 21 28 28 H 4.40638 * 5.51397 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47460 * 55.93439 * 3 2 1 30 30 H 1.09000 * 109.47268 * 295.92350 * 3 2 1 31 31 H 0.97006 * 119.99477 * 180.02562 * 8 7 5 32 32 H 1.09002 * 111.05166 * 20.13981 * 17 15 13 33 33 H 1.08996 * 111.05458 * 144.07692 * 17 15 13 34 34 H 1.09001 * 110.89993 * 275.42986 * 19 18 17 35 35 H 1.09005 * 110.77239 * 151.92760 * 19 18 17 36 36 H 1.08999 * 109.47176 * 303.31331 * 25 23 21 37 37 H 1.08998 * 109.46887 * 63.31061 * 25 23 21 38 38 H 1.09005 * 109.47433 * 183.31145 * 25 23 21 39 39 H 1.09001 * 109.46711 * 304.99372 * 26 23 21 40 40 H 1.08993 * 109.47272 * 65.00079 * 26 23 21 41 41 H 1.09007 * 109.46977 * 59.99661 * 27 26 23 42 42 H 1.09003 * 109.47148 * 179.97438 * 27 26 23 43 43 H 1.08999 * 109.47010 * 300.00025 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1335 1.3787 -0.0980 5 6 3.3618 1.9392 -1.3282 6 1 3.0130 2.9393 -1.5390 7 6 4.0419 1.2205 -2.3037 8 7 4.0887 1.6697 -3.5378 9 14 4.8895 -0.3841 -1.8610 10 1 3.9572 -1.5166 -2.0917 11 1 6.0969 -0.5564 -2.7083 12 1 5.2886 -0.3550 -0.4310 13 6 3.3578 2.0953 1.0212 14 8 3.2527 1.5697 2.1092 15 6 3.7392 3.5499 0.9207 16 1 3.2300 3.9861 0.0614 17 6 5.2647 3.6490 0.6933 18 16 5.8654 3.9730 2.4043 19 6 4.3580 4.9177 2.8870 20 7 3.2944 4.2343 2.1252 21 6 2.0041 4.2480 2.5141 22 8 1.1793 3.6029 1.9020 23 6 1.5849 5.0698 3.7057 24 1 2.2868 5.8920 3.8450 25 6 1.5773 4.1882 4.9560 26 6 0.1815 5.6318 3.4694 27 6 -0.1943 6.5661 4.6212 28 1 -1.0503 -0.0005 -0.0002 29 1 3.0096 -0.5748 -0.8512 30 1 3.0095 -0.4484 0.9242 31 1 4.5632 1.1678 -4.2189 32 1 5.6650 2.7109 0.3088 33 1 5.5084 4.4778 0.0286 34 1 4.4402 5.9618 2.5849 35 1 4.1783 4.8374 3.9591 36 1 0.9200 3.3339 4.7942 37 1 2.5886 3.8354 5.1579 38 1 1.2178 4.7672 5.8068 39 1 0.1656 6.1868 2.5314 40 1 -0.5345 4.8116 3.4186 41 1 0.5218 7.3864 4.6721 42 1 -1.1939 6.9668 4.4527 43 1 -0.1783 6.0112 5.5592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281488452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:41 Heat of formation + Delta-G solvation = -11.596918 kcal Electronic energy + Delta-G solvation = -26806.027949 eV Core-core repulsion = 23172.331684 eV Total energy + Delta-G solvation = -3633.696265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82547 -40.36180 -37.62095 -36.83625 -36.40777 -34.55494 -33.63478 -32.47007 -30.45398 -28.89372 -28.20634 -26.94337 -26.45920 -24.64399 -22.67068 -21.06400 -20.46068 -19.80016 -18.90578 -18.74998 -18.06586 -17.87676 -17.17134 -16.67619 -16.21622 -16.18514 -15.81524 -15.64145 -15.10663 -15.02166 -14.81034 -14.57471 -14.47555 -14.26565 -14.11278 -13.66289 -13.60341 -13.45571 -13.11050 -12.99545 -12.94276 -12.65423 -12.63218 -12.53333 -12.06625 -11.73734 -11.65447 -11.58589 -11.49628 -11.36640 -11.04677 -10.82195 -10.72188 -9.98174 -9.71053 -8.88069 -8.53631 -6.32914 0.58244 0.91492 1.14442 1.25837 1.33853 1.35682 1.64956 1.71899 1.83323 1.85103 2.11971 2.73132 2.84525 3.21968 3.48444 3.55230 3.77602 3.79103 3.96170 4.03157 4.11048 4.18116 4.23451 4.32024 4.37844 4.45033 4.47790 4.51911 4.58360 4.69153 4.85281 4.96540 4.97045 5.09787 5.11751 5.18259 5.35349 5.36466 5.49203 5.98117 6.11654 6.12983 6.63133 6.85985 7.05894 7.25802 7.63656 8.58805 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.005300 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.123056 B = 5281.903516 C = 6366.177551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.230 4.230 3 C 0.201 3.799 4 N -0.474 5.474 5 C -0.341 4.341 6 H 0.077 0.923 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 0.919 3.081 10 H -0.262 1.262 11 H -0.273 1.273 12 H -0.262 1.262 13 C 0.497 3.503 14 O -0.592 6.592 15 C 0.134 3.866 16 H 0.092 0.908 17 C -0.036 4.036 18 S -0.286 6.286 19 C 0.160 3.840 20 N -0.604 5.604 21 C 0.520 3.480 22 O -0.570 6.570 23 C -0.094 4.094 24 H 0.127 0.873 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.143 4.143 28 H 0.255 0.745 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.282 0.718 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.033 0.967 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 10.179 13.784 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.231 4.231 3 C 0.079 3.921 4 N -0.196 5.196 5 C -0.469 4.469 6 H 0.094 0.906 7 C -0.164 4.164 8 N -0.531 5.531 9 Si 0.745 3.255 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.186 1.186 13 C 0.286 3.714 14 O -0.475 6.475 15 C 0.025 3.975 16 H 0.110 0.890 17 C -0.185 4.185 18 S -0.061 6.061 19 C -0.072 4.072 20 N -0.339 5.339 21 C 0.310 3.690 22 O -0.447 6.447 23 C -0.115 4.115 24 H 0.144 0.856 25 C -0.194 4.194 26 C -0.145 4.145 27 C -0.200 4.200 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.095 9.250 14.408 17.122 hybrid contribution -0.877 -1.037 -1.451 1.987 sum -0.972 8.213 12.957 15.372 Atomic orbital electron populations 1.25647 0.96558 0.98051 1.00282 1.23948 0.95677 1.02370 1.01149 1.18606 0.84931 0.86830 1.01754 1.43665 1.58328 1.11515 1.06095 1.18809 1.36887 1.02485 0.88699 0.90585 1.25830 0.95465 1.00590 0.94526 1.69724 1.40807 1.40953 1.01585 0.86231 0.79165 0.80681 0.79451 1.18835 1.19873 1.18599 1.20893 0.77634 0.89487 0.83410 1.90511 1.56011 1.72646 1.28344 1.20876 0.96681 0.90712 0.89225 0.89032 1.24268 0.91074 1.07879 0.95278 1.88207 1.28184 1.73294 1.16379 1.24703 0.82951 0.98409 1.01116 1.48512 1.08133 1.52447 1.24820 1.21596 0.80064 0.81276 0.86108 1.90734 1.52018 1.44592 1.57350 1.21435 1.00321 0.98288 0.91486 0.85553 1.21759 1.02307 0.99053 0.96239 1.21371 0.93778 0.99231 1.00098 1.21788 1.02123 0.98970 0.97160 0.72914 0.89894 0.89256 0.90749 0.87666 0.84716 0.84423 0.84599 0.94762 0.92207 0.87600 0.92629 0.93462 0.90763 0.92015 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.66 19.25 74.32 1.43 -6.23 16 2 C -0.23 -11.00 13.67 31.13 0.43 -10.57 16 3 C 0.20 9.82 4.58 84.57 0.39 10.21 16 4 N -0.47 -24.21 2.06 -645.42 -1.33 -25.53 16 5 C -0.34 -18.11 8.77 84.04 0.74 -17.37 16 6 H 0.08 4.35 6.83 -2.91 -0.02 4.33 16 7 C 0.04 2.15 5.44 84.92 0.46 2.61 16 8 N -0.89 -48.70 13.96 21.66 0.30 -48.39 16 9 Si 0.92 41.27 24.75 68.60 1.70 42.97 16 10 H -0.26 -11.36 6.74 99.48 0.67 -10.69 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.26 -11.85 7.03 99.48 0.70 -11.15 16 13 C 0.50 24.31 5.23 87.66 0.46 24.77 16 14 O -0.59 -31.28 15.63 -1.76 -0.03 -31.31 16 15 C 0.13 5.38 2.30 44.96 0.10 5.48 16 16 H 0.09 4.01 6.55 -2.39 -0.02 4.00 16 17 C -0.04 -1.23 6.82 72.51 0.49 -0.73 16 18 S -0.29 -8.39 23.44 -56.49 -1.32 -9.72 16 19 C 0.16 3.64 6.65 127.56 0.85 4.48 16 20 N -0.60 -20.14 2.70 -807.04 -2.18 -22.32 16 21 C 0.52 18.36 6.15 87.65 0.54 18.90 16 22 O -0.57 -26.62 15.36 -1.76 -0.03 -26.64 16 23 C -0.09 -2.14 2.00 -11.54 -0.02 -2.17 16 24 H 0.13 1.87 6.90 -2.39 -0.02 1.85 16 25 C -0.14 -2.91 8.97 71.98 0.65 -2.26 16 26 C -0.11 -2.35 4.97 30.60 0.15 -2.20 16 27 C -0.14 -1.97 9.67 71.98 0.70 -1.27 16 28 H 0.25 7.49 7.80 -4.40 -0.03 7.45 16 29 H 0.08 3.97 3.34 -2.39 -0.01 3.96 16 30 H 0.09 4.30 7.35 -2.39 -0.02 4.29 16 31 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 32 H 0.10 4.04 7.78 -2.39 -0.02 4.03 16 33 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.14 2.42 6.75 -2.38 -0.02 2.40 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.28 7.52 -2.39 -0.02 1.26 16 38 H 0.11 1.47 6.42 -2.38 -0.02 1.46 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.29 8.01 -2.39 -0.02 1.27 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.81 6.49 -2.39 -0.02 0.80 16 Total: -1.00 -75.39 362.17 5.45 -69.95 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.98 Total: 27.35 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 7.36 Total: 23.65 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -3.21 Total: -96.24 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.05 Total: -57.96 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.70 Total: 42.97 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.32 Total: -9.72 kcal Total: -75.39 5.45 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.350 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds