Wall clock time and date at job start Fri Apr 10 2020 18:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47370 * 37.67698 * 3 2 1 5 5 C 1.37095 * 119.99853 * 95.82872 * 4 3 2 6 6 H 1.08001 * 119.99533 * 171.10085 * 5 4 3 7 7 C 1.38947 * 120.00392 * 351.09532 * 5 4 3 8 8 N 1.31413 * 120.00342 * 326.92463 * 7 5 4 9 9 Si 1.86806 * 120.00031 * 146.91876 * 7 5 4 10 10 H 1.48502 * 109.46930 * 94.97379 * 9 7 5 11 11 H 1.48491 * 109.47250 * 214.97608 * 9 7 5 12 12 H 1.48497 * 109.47062 * 334.97933 * 9 7 5 13 13 C 1.34767 * 119.99741 * 275.83279 * 4 3 2 14 14 O 1.21294 * 120.00217 * 185.03259 * 13 4 3 15 15 C 1.50709 * 120.00370 * 5.03133 * 13 4 3 16 16 H 1.08998 * 108.69774 * 43.29979 * 15 13 4 17 17 C 1.54560 * 108.75114 * 285.20052 * 15 13 4 18 18 S 1.84218 * 101.32317 * 262.12195 * 17 15 13 19 19 C 1.84332 * 93.82728 * 327.58707 * 18 17 15 20 20 N 1.45493 * 108.75631 * 161.55526 * 15 13 4 21 21 C 1.34777 * 122.43100 * 302.04922 * 20 15 13 22 22 O 1.21280 * 120.00055 * 0.02562 * 21 20 15 23 23 C 1.50701 * 120.00119 * 180.02562 * 21 20 15 24 24 H 1.09007 * 109.46999 * 299.99805 * 23 21 20 25 25 C 1.53000 * 109.47209 * 59.99925 * 23 21 20 26 26 C 1.52999 * 109.47376 * 180.02562 * 23 21 20 27 27 C 1.52992 * 109.47182 * 174.99873 * 26 23 21 28 28 H 4.40643 * 5.51387 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47791 * 277.66997 * 3 2 1 30 30 H 1.09008 * 109.47100 * 157.67304 * 3 2 1 31 31 H 0.96999 * 120.00254 * 179.97438 * 8 7 5 32 32 H 1.08997 * 111.05717 * 20.13579 * 17 15 13 33 33 H 1.08998 * 111.04982 * 144.07262 * 17 15 13 34 34 H 1.08999 * 110.89893 * 275.43574 * 19 18 17 35 35 H 1.09002 * 110.76535 * 151.93171 * 19 18 17 36 36 H 1.09007 * 109.47070 * 180.02562 * 25 23 21 37 37 H 1.09007 * 109.47011 * 300.00003 * 25 23 21 38 38 H 1.08994 * 109.47033 * 60.00275 * 25 23 21 39 39 H 1.08999 * 109.47194 * 54.99870 * 26 23 21 40 40 H 1.09002 * 109.47139 * 295.00137 * 26 23 21 41 41 H 1.09002 * 109.47776 * 60.00025 * 27 26 23 42 42 H 1.09004 * 109.47406 * 179.97438 * 27 26 23 43 43 H 1.09004 * 109.47547 * 299.99427 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0923 -0.8442 5 6 3.4769 -0.8499 -2.1495 6 1 3.9703 -1.6158 -2.7295 7 6 3.1888 0.3810 -2.7262 8 7 2.1114 1.0403 -2.3639 9 14 4.3332 1.0987 -4.0165 10 1 3.8357 0.7459 -5.3705 11 1 4.3753 2.5762 -3.8740 12 1 5.6982 0.5444 -3.8308 13 6 3.2482 -2.3360 -0.3377 14 8 3.7380 -3.2212 -1.0069 15 6 2.7664 -2.6272 1.0603 16 1 1.8025 -2.1398 1.2063 17 6 3.7772 -2.0338 2.0679 18 16 4.7861 -3.5178 2.4846 19 6 3.3729 -4.6855 2.2915 20 7 2.5907 -4.0642 1.2048 21 6 1.7691 -4.7757 0.4078 22 8 1.1432 -4.2191 -0.4693 23 6 1.6280 -6.2629 0.6065 24 1 2.5993 -6.7405 0.4769 25 6 1.1069 -6.5417 2.0178 26 6 0.6433 -6.8237 -0.4214 27 6 0.5943 -8.3481 -0.3018 28 1 -1.0498 -0.0004 0.0000 29 1 3.0095 -0.1363 1.0184 30 1 3.0089 0.9515 -0.3904 31 1 1.9104 1.8998 -2.7662 32 1 4.3895 -1.2628 1.6003 33 1 3.2684 -1.6452 2.9500 34 1 2.7856 -4.7400 3.2082 35 1 3.7258 -5.6740 1.9977 36 1 1.0053 -7.6175 2.1616 37 1 1.8089 -6.1423 2.7498 38 1 0.1358 -6.0642 2.1474 39 1 0.9689 -6.5482 -1.4244 40 1 -0.3490 -6.4126 -0.2358 41 1 0.2687 -8.6238 0.7012 42 1 -0.1076 -8.7477 -1.0338 43 1 1.5866 -8.7593 -0.4875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281488457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:45 Heat of formation + Delta-G solvation = 18.184348 kcal Electronic energy + Delta-G solvation = -26796.675986 eV Core-core repulsion = 23164.271134 eV Total energy + Delta-G solvation = -3632.404852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29489 -38.50535 -35.97266 -35.32388 -34.94060 -32.40997 -31.48447 -30.96257 -29.33829 -27.32644 -26.46728 -25.50341 -24.89906 -23.33495 -21.42249 -19.69913 -18.50433 -17.98302 -17.26778 -16.97965 -16.67567 -16.19647 -15.28504 -15.16019 -14.93956 -14.50895 -14.16042 -14.13916 -13.65624 -13.54568 -13.45698 -13.19182 -12.91437 -12.63048 -12.40587 -12.27794 -12.07650 -11.79658 -11.73890 -11.66968 -11.60492 -11.43383 -10.95618 -10.83720 -10.65119 -10.55267 -10.32937 -10.23570 -9.47203 -9.30982 -9.20522 -8.94755 -8.90921 -8.12459 -7.88759 -7.73543 -6.40159 -3.72927 1.67322 2.04851 2.85262 3.06714 3.15504 3.28385 3.36166 3.61170 3.83127 3.94431 4.19169 4.43019 4.67483 4.73247 4.75734 4.87469 4.99543 5.04653 5.06624 5.20558 5.27326 5.31383 5.35310 5.44381 5.47432 5.53408 5.70157 5.77614 5.80077 5.83489 5.89042 6.06383 6.14297 6.25215 6.37804 6.47855 6.65163 6.95169 7.48198 7.59454 8.03248 8.42509 8.52124 8.73174 9.16114 9.37561 9.92224 10.63360 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.004739 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.665705 B = 5907.364252 C = 6530.728817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.130 4.130 3 C 0.222 3.778 4 N -0.435 5.435 5 C -0.319 4.319 6 H 0.107 0.893 7 C 0.037 3.963 8 N -0.846 5.846 9 Si 0.905 3.095 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.454 3.546 14 O -0.559 6.559 15 C 0.118 3.882 16 H 0.099 0.901 17 C -0.063 4.063 18 S -0.269 6.269 19 C 0.159 3.841 20 N -0.596 5.596 21 C 0.533 3.467 22 O -0.503 6.503 23 C -0.105 4.105 24 H 0.096 0.904 25 C -0.154 4.154 26 C -0.106 4.106 27 C -0.151 4.151 28 H 0.200 0.800 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.268 0.732 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 -9.440 13.416 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.131 4.131 3 C 0.099 3.901 4 N -0.154 5.154 5 C -0.445 4.445 6 H 0.125 0.875 7 C -0.168 4.168 8 N -0.483 5.483 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.192 1.192 13 C 0.241 3.759 14 O -0.441 6.441 15 C 0.009 3.991 16 H 0.116 0.884 17 C -0.212 4.212 18 S -0.043 6.043 19 C -0.075 4.075 20 N -0.333 5.333 21 C 0.320 3.680 22 O -0.375 6.375 23 C -0.127 4.127 24 H 0.114 0.886 25 C -0.211 4.211 26 C -0.144 4.144 27 C -0.208 4.208 28 H 0.218 0.782 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.497 -9.568 12.797 15.986 hybrid contribution -0.987 0.837 -0.995 1.633 sum -1.484 -8.731 11.801 14.755 Atomic orbital electron populations 1.24337 0.95434 1.02470 1.04131 1.23238 0.94445 0.98447 0.96986 1.18501 0.84356 0.94502 0.92780 1.43679 1.55792 1.05096 1.10880 1.19560 1.36979 1.00059 0.87925 0.87533 1.25144 0.95554 0.97556 0.98555 1.70291 1.19514 1.15256 1.43229 0.86269 0.81813 0.78039 0.80784 1.20531 1.20759 1.19238 1.19658 0.85354 0.83036 0.87882 1.90514 1.47891 1.44512 1.61166 1.21189 0.99896 0.81916 0.96111 0.88374 1.24666 0.97775 0.97823 1.00980 1.88232 1.19097 1.05409 1.91562 1.24416 0.91316 0.98954 0.92853 1.48085 1.45159 1.06514 1.33573 1.20389 0.78343 0.88986 0.80327 1.90792 1.44685 1.71535 1.30526 1.21296 1.01739 0.91942 0.97673 0.88599 1.22034 1.01890 1.02601 0.94578 1.21334 0.99001 0.94880 0.99142 1.21830 1.01761 0.95642 1.01593 0.78244 0.92068 0.86866 0.92200 0.85655 0.87641 0.88565 0.87065 0.91165 0.91780 0.91996 0.90796 0.91361 0.92617 0.92556 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -5.17 19.25 29.55 0.57 -4.60 16 2 C -0.13 -2.92 10.75 -37.12 -0.40 -3.32 16 3 C 0.22 4.85 4.75 -6.83 -0.03 4.82 16 4 N -0.44 -11.11 2.60 -117.93 -0.31 -11.41 16 5 C -0.32 -8.98 9.36 -14.94 -0.14 -9.12 16 6 H 0.11 3.23 7.37 -52.49 -0.39 2.85 16 7 C 0.04 0.98 4.64 -17.47 -0.08 0.90 16 8 N -0.85 -22.46 10.05 55.50 0.56 -21.90 16 9 Si 0.91 20.54 29.66 -169.99 -5.04 15.50 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.45 11.21 5.56 -10.99 -0.06 11.14 16 14 O -0.56 -15.85 15.15 -3.46 -0.05 -15.91 16 15 C 0.12 2.24 2.19 -68.80 -0.15 2.09 16 16 H 0.10 1.93 6.56 -51.93 -0.34 1.59 16 17 C -0.06 -0.95 5.73 37.98 0.22 -0.73 16 18 S -0.27 -3.93 23.44 -107.50 -2.52 -6.45 16 19 C 0.16 2.00 5.67 60.45 0.34 2.34 16 20 N -0.60 -10.24 2.71 -169.02 -0.46 -10.70 16 21 C 0.53 9.89 6.29 -10.98 -0.07 9.82 16 22 O -0.50 -12.00 14.92 -3.45 -0.05 -12.06 16 23 C -0.11 -1.38 1.99 -91.77 -0.18 -1.57 16 24 H 0.10 1.18 7.64 -51.93 -0.40 0.78 16 25 C -0.15 -1.45 8.69 37.16 0.32 -1.12 16 26 C -0.11 -1.40 4.75 -26.74 -0.13 -1.52 16 27 C -0.15 -1.47 9.67 37.15 0.36 -1.11 16 28 H 0.20 3.47 7.80 -54.10 -0.42 3.05 16 29 H 0.06 1.07 5.04 -51.93 -0.26 0.81 16 30 H 0.11 2.60 6.19 -51.92 -0.32 2.28 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.13 1.94 6.67 -51.93 -0.35 1.59 16 33 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.10 0.91 6.93 -51.93 -0.36 0.55 16 35 H 0.11 1.23 6.94 -51.93 -0.36 0.87 16 36 H 0.07 0.52 6.57 -51.93 -0.34 0.18 16 37 H 0.06 0.52 4.71 -51.93 -0.24 0.28 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.17 7.96 -51.93 -0.41 0.76 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -35.62 355.08 -7.74 -43.35 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.78 Total: 6.20 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 0.57 Total: 8.03 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.21 Total: -44.01 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.10 Total: -27.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.52 Total: -6.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.62 -7.74 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.537 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds