Wall clock time and date at job start Fri Apr 10 2020 18:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47370 * 37.67698 * 3 2 1 5 5 C 1.37095 * 119.99853 * 95.82872 * 4 3 2 6 6 H 1.08001 * 119.99533 * 171.10085 * 5 4 3 7 7 C 1.38947 * 120.00392 * 351.09532 * 5 4 3 8 8 N 1.31413 * 120.00342 * 326.92463 * 7 5 4 9 9 Si 1.86806 * 120.00031 * 146.91876 * 7 5 4 10 10 H 1.48502 * 109.46930 * 94.97379 * 9 7 5 11 11 H 1.48491 * 109.47250 * 214.97608 * 9 7 5 12 12 H 1.48497 * 109.47062 * 334.97933 * 9 7 5 13 13 C 1.34767 * 119.99741 * 275.83279 * 4 3 2 14 14 O 1.21294 * 120.00217 * 185.03259 * 13 4 3 15 15 C 1.50709 * 120.00370 * 5.03133 * 13 4 3 16 16 H 1.08998 * 108.69774 * 43.29979 * 15 13 4 17 17 C 1.54560 * 108.75114 * 285.20052 * 15 13 4 18 18 S 1.84218 * 101.32317 * 262.12195 * 17 15 13 19 19 C 1.84332 * 93.82728 * 327.58707 * 18 17 15 20 20 N 1.45493 * 108.75631 * 161.55526 * 15 13 4 21 21 C 1.34777 * 122.43100 * 302.04922 * 20 15 13 22 22 O 1.21280 * 120.00055 * 0.02562 * 21 20 15 23 23 C 1.50701 * 120.00119 * 180.02562 * 21 20 15 24 24 H 1.09007 * 109.46999 * 299.99805 * 23 21 20 25 25 C 1.53000 * 109.47209 * 59.99925 * 23 21 20 26 26 C 1.52999 * 109.47376 * 180.02562 * 23 21 20 27 27 C 1.52992 * 109.47182 * 174.99873 * 26 23 21 28 28 H 4.40643 * 5.51387 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.47791 * 277.66997 * 3 2 1 30 30 H 1.09008 * 109.47100 * 157.67304 * 3 2 1 31 31 H 0.96999 * 120.00254 * 179.97438 * 8 7 5 32 32 H 1.08997 * 111.05717 * 20.13579 * 17 15 13 33 33 H 1.08998 * 111.04982 * 144.07262 * 17 15 13 34 34 H 1.08999 * 110.89893 * 275.43574 * 19 18 17 35 35 H 1.09002 * 110.76535 * 151.93171 * 19 18 17 36 36 H 1.09007 * 109.47070 * 180.02562 * 25 23 21 37 37 H 1.09007 * 109.47011 * 300.00003 * 25 23 21 38 38 H 1.08994 * 109.47033 * 60.00275 * 25 23 21 39 39 H 1.08999 * 109.47194 * 54.99870 * 26 23 21 40 40 H 1.09002 * 109.47139 * 295.00137 * 26 23 21 41 41 H 1.09002 * 109.47776 * 60.00025 * 27 26 23 42 42 H 1.09004 * 109.47406 * 179.97438 * 27 26 23 43 43 H 1.09004 * 109.47547 * 299.99427 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0923 -0.8442 5 6 3.4769 -0.8499 -2.1495 6 1 3.9703 -1.6158 -2.7295 7 6 3.1888 0.3810 -2.7262 8 7 2.1114 1.0403 -2.3639 9 14 4.3332 1.0987 -4.0165 10 1 3.8357 0.7459 -5.3705 11 1 4.3753 2.5762 -3.8740 12 1 5.6982 0.5444 -3.8308 13 6 3.2482 -2.3360 -0.3377 14 8 3.7380 -3.2212 -1.0069 15 6 2.7664 -2.6272 1.0603 16 1 1.8025 -2.1398 1.2063 17 6 3.7772 -2.0338 2.0679 18 16 4.7861 -3.5178 2.4846 19 6 3.3729 -4.6855 2.2915 20 7 2.5907 -4.0642 1.2048 21 6 1.7691 -4.7757 0.4078 22 8 1.1432 -4.2191 -0.4693 23 6 1.6280 -6.2629 0.6065 24 1 2.5993 -6.7405 0.4769 25 6 1.1069 -6.5417 2.0178 26 6 0.6433 -6.8237 -0.4214 27 6 0.5943 -8.3481 -0.3018 28 1 -1.0498 -0.0004 0.0000 29 1 3.0095 -0.1363 1.0184 30 1 3.0089 0.9515 -0.3904 31 1 1.9104 1.8998 -2.7662 32 1 4.3895 -1.2628 1.6003 33 1 3.2684 -1.6452 2.9500 34 1 2.7856 -4.7400 3.2082 35 1 3.7258 -5.6740 1.9977 36 1 1.0053 -7.6175 2.1616 37 1 1.8089 -6.1423 2.7498 38 1 0.1358 -6.0642 2.1474 39 1 0.9689 -6.5482 -1.4244 40 1 -0.3490 -6.4126 -0.2358 41 1 0.2687 -8.6238 0.7012 42 1 -0.1076 -8.7477 -1.0338 43 1 1.5866 -8.7593 -0.4875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281488457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:45 Heat of formation + Delta-G solvation = -5.083259 kcal Electronic energy + Delta-G solvation = -26797.684946 eV Core-core repulsion = 23164.271134 eV Total energy + Delta-G solvation = -3633.413811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77809 -40.20172 -37.48594 -36.87859 -36.44362 -34.27473 -33.15987 -32.50259 -30.30272 -28.55249 -28.26703 -26.98422 -26.21838 -24.68427 -22.78856 -21.05832 -19.99742 -19.79817 -18.79122 -18.53606 -18.16534 -17.71147 -16.97274 -16.44973 -16.22750 -16.08149 -15.86322 -15.66606 -15.00118 -14.85139 -14.62571 -14.50781 -14.22363 -14.09805 -13.82716 -13.71860 -13.58679 -13.33137 -13.19424 -12.85082 -12.78903 -12.58401 -12.50997 -12.38584 -12.14082 -11.80107 -11.65318 -11.54220 -11.22687 -11.10640 -10.77999 -10.69809 -10.61794 -9.91938 -9.73791 -8.87020 -8.44182 -5.85263 0.55957 0.90740 1.28541 1.38960 1.48572 1.54380 1.74490 1.85425 2.08261 2.22458 2.32348 2.88096 3.03627 3.25345 3.48619 3.69729 3.77551 3.81851 3.92440 4.03857 4.12052 4.18497 4.28458 4.35630 4.37422 4.50347 4.51952 4.57513 4.73011 4.86369 4.93485 5.00042 5.07850 5.10611 5.19261 5.31123 5.35114 5.46734 5.48055 5.98642 6.15811 6.40867 7.02612 7.09110 7.15823 7.39478 7.97531 8.58129 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.004739 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.665705 B = 5907.364252 C = 6530.728817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C 0.224 3.776 4 N -0.449 5.449 5 C -0.362 4.362 6 H 0.067 0.933 7 C 0.013 3.987 8 N -0.857 5.857 9 Si 0.971 3.029 10 H -0.283 1.283 11 H -0.261 1.261 12 H -0.273 1.273 13 C 0.445 3.555 14 O -0.611 6.611 15 C 0.127 3.873 16 H 0.091 0.909 17 C -0.058 4.058 18 S -0.286 6.286 19 C 0.160 3.840 20 N -0.600 5.600 21 C 0.521 3.479 22 O -0.572 6.572 23 C -0.098 4.098 24 H 0.109 0.891 25 C -0.145 4.145 26 C -0.106 4.106 27 C -0.142 4.142 28 H 0.232 0.768 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.274 0.726 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -10.175 16.278 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.168 4.168 3 C 0.102 3.898 4 N -0.167 5.167 5 C -0.489 4.489 6 H 0.085 0.915 7 C -0.192 4.192 8 N -0.493 5.493 9 Si 0.794 3.206 10 H -0.209 1.209 11 H -0.185 1.185 12 H -0.198 1.198 13 C 0.233 3.767 14 O -0.496 6.496 15 C 0.017 3.983 16 H 0.109 0.891 17 C -0.206 4.206 18 S -0.060 6.060 19 C -0.072 4.072 20 N -0.335 5.335 21 C 0.310 3.690 22 O -0.449 6.449 23 C -0.119 4.119 24 H 0.127 0.873 25 C -0.202 4.202 26 C -0.144 4.144 27 C -0.199 4.199 28 H 0.249 0.751 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.706 -10.288 15.723 18.803 hybrid contribution -0.968 1.045 -1.935 2.403 sum -1.674 -9.243 13.788 16.683 Atomic orbital electron populations 1.25191 0.96456 1.01025 1.02837 1.23590 0.95195 0.99764 0.98238 1.18598 0.84412 0.92659 0.94146 1.43841 1.55924 1.06531 1.10435 1.19341 1.39326 1.00551 0.89646 0.91453 1.25802 0.96198 0.96856 1.00328 1.70335 1.19770 1.15384 1.43840 0.85318 0.79289 0.78120 0.77885 1.20874 1.18465 1.19764 1.20682 0.83866 0.82142 0.89993 1.90459 1.49966 1.45926 1.63254 1.21054 1.00244 0.83625 0.93392 0.89104 1.24687 0.96946 0.97696 1.01308 1.88320 1.20561 1.05900 1.91188 1.24930 0.90406 0.98759 0.93104 1.48255 1.44951 1.05941 1.34332 1.21524 0.77255 0.91098 0.79144 1.90751 1.47552 1.73232 1.33410 1.21395 1.02521 0.87758 1.00250 0.87317 1.22044 1.01778 1.04703 0.91710 1.21316 0.98313 0.97707 0.97056 1.21781 1.02480 0.92295 1.03328 0.75148 0.87883 0.88383 0.91554 0.86563 0.83079 0.83897 0.85079 0.88116 0.89880 0.92562 0.95019 0.92487 0.89977 0.92255 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.87 19.25 74.32 1.43 -8.44 16 2 C -0.17 -7.55 10.75 31.13 0.33 -7.22 16 3 C 0.22 9.97 4.75 84.57 0.40 10.37 16 4 N -0.45 -23.92 2.60 -645.40 -1.68 -25.60 16 5 C -0.36 -21.56 9.36 84.04 0.79 -20.77 16 6 H 0.07 4.44 7.37 -2.91 -0.02 4.42 16 7 C 0.01 0.72 4.64 84.93 0.39 1.11 16 8 N -0.86 -46.14 10.05 21.66 0.22 -45.92 16 9 Si 0.97 43.21 29.66 68.60 2.03 45.24 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.44 22.90 5.56 87.66 0.49 23.39 16 14 O -0.61 -36.79 15.15 5.54 0.08 -36.70 16 15 C 0.13 4.79 2.19 44.97 0.10 4.89 16 16 H 0.09 3.58 6.56 -2.39 -0.02 3.56 16 17 C -0.06 -1.62 5.73 72.51 0.42 -1.20 16 18 S -0.29 -7.72 23.44 -56.49 -1.32 -9.05 16 19 C 0.16 3.51 5.67 127.56 0.72 4.24 16 20 N -0.60 -20.08 2.71 -807.04 -2.18 -22.27 16 21 C 0.52 19.60 6.29 87.66 0.55 20.15 16 22 O -0.57 -28.94 14.92 5.58 0.08 -28.86 16 23 C -0.10 -2.47 1.99 -11.54 -0.02 -2.49 16 24 H 0.11 2.46 7.64 -2.38 -0.02 2.44 16 25 C -0.15 -2.19 8.69 71.98 0.63 -1.56 16 26 C -0.11 -2.84 4.75 30.59 0.15 -2.69 16 27 C -0.14 -2.47 9.67 71.98 0.70 -1.78 16 28 H 0.23 7.65 7.80 -4.43 -0.03 7.62 16 29 H 0.10 3.56 5.04 -2.39 -0.01 3.55 16 30 H 0.10 4.60 6.19 -2.38 -0.01 4.58 16 31 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.12 3.49 6.67 -2.39 -0.02 3.48 16 33 H 0.15 2.86 8.14 -2.39 -0.02 2.85 16 34 H 0.14 1.92 6.93 -2.39 -0.02 1.90 16 35 H 0.13 2.40 6.94 -2.39 -0.02 2.38 16 36 H 0.10 0.97 6.57 -2.38 -0.02 0.95 16 37 H 0.08 0.93 4.71 -2.38 -0.01 0.92 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.03 1.08 7.96 -2.39 -0.02 1.06 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.02 6.57 -2.39 -0.02 1.00 16 42 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -85.80 355.08 5.32 -80.48 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 1.03 Total: 24.68 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 7.07 Total: 18.00 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -3.65 Total: -93.79 kcal Atomic # 8 Polarization: -65.73 SS G_CDS: 0.17 Total: -65.56 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.32 Total: -9.05 kcal Total: -85.80 5.32 -80.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281488457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.393 kcal (2) G-P(sol) polarization free energy of solvation -85.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds