Wall clock time and date at job start Fri Apr 10 2020 18:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46938 * 269.78856 * 3 2 1 5 5 C 1.37105 * 120.00122 * 269.22261 * 4 3 2 6 6 H 1.07996 * 119.99932 * 201.09871 * 5 4 3 7 7 C 1.38946 * 119.99658 * 21.10309 * 5 4 3 8 8 N 1.31413 * 120.00098 * 5.59228 * 7 5 4 9 9 Si 1.86797 * 119.99945 * 185.59548 * 7 5 4 10 10 H 1.48495 * 109.47287 * 59.99337 * 9 7 5 11 11 H 1.48501 * 109.47505 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46879 * 299.99815 * 9 7 5 13 13 C 1.34777 * 120.00409 * 89.22528 * 4 3 2 14 14 O 1.21284 * 120.00472 * 179.97438 * 13 4 3 15 15 C 1.50705 * 119.99643 * 0.02562 * 13 4 3 16 16 H 1.08998 * 108.70734 * 56.79848 * 15 13 4 17 17 C 1.54567 * 108.75176 * 298.54379 * 15 13 4 18 18 S 1.84214 * 101.36294 * 215.91466 * 17 15 13 19 19 C 1.84212 * 93.86359 * 32.26125 * 18 17 15 20 20 N 1.45496 * 108.75228 * 174.90790 * 15 13 4 21 21 C 1.34772 * 122.42896 * 299.90578 * 20 15 13 22 22 O 1.21283 * 120.00192 * 356.52594 * 21 20 15 23 23 C 1.50708 * 120.00298 * 176.52700 * 21 20 15 24 24 C 1.52997 * 109.47328 * 190.71154 * 23 21 20 25 25 C 1.53004 * 109.46832 * 310.71257 * 23 21 20 26 26 C 1.53001 * 109.46945 * 70.70868 * 23 21 20 27 27 H 4.40633 * 5.51367 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46875 * 149.79080 * 3 2 1 29 29 H 1.09002 * 109.47170 * 29.78599 * 3 2 1 30 30 H 0.97008 * 119.99667 * 180.02562 * 8 7 5 31 31 H 1.08998 * 111.05016 * 333.94907 * 17 15 13 32 32 H 1.08999 * 111.05186 * 97.88401 * 17 15 13 33 33 H 1.09003 * 110.77106 * 208.27490 * 19 18 17 34 34 H 1.09000 * 110.77746 * 84.85507 * 19 18 17 35 35 H 1.08998 * 109.47061 * 59.99673 * 24 23 21 36 36 H 1.08997 * 109.46961 * 179.97438 * 24 23 21 37 37 H 1.08999 * 109.47116 * 299.99696 * 24 23 21 38 38 H 1.08998 * 109.47198 * 59.99384 * 25 23 21 39 39 H 1.08995 * 109.46963 * 180.02562 * 25 23 21 40 40 H 1.09005 * 109.46654 * 299.99722 * 25 23 21 41 41 H 1.08997 * 109.47263 * 67.22948 * 26 23 21 42 42 H 1.09000 * 109.46865 * 187.22520 * 26 23 21 43 43 H 1.09000 * 109.47178 * 307.22779 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.0060 1.3812 5 6 3.3775 1.1957 2.0178 6 1 4.0371 1.2259 2.8723 7 6 2.7751 2.3624 1.5635 8 7 1.8886 2.3101 0.5948 9 14 3.2255 4.0055 2.3295 10 1 4.6775 4.2561 2.1453 11 1 2.4496 5.0876 1.6720 12 1 2.9079 3.9790 3.7800 13 6 3.3446 -1.1586 2.0262 14 8 3.7493 -1.1542 3.1695 15 6 3.0780 -2.4664 1.3263 16 1 3.6710 -2.5011 0.4124 17 6 1.5804 -2.5320 0.9495 18 16 1.2219 -4.3219 1.1969 19 6 2.4303 -4.5010 2.5757 20 7 3.4979 -3.5557 2.1945 21 6 4.7694 -3.6916 2.6201 22 8 5.6248 -2.9256 2.2297 23 6 5.1285 -4.7955 3.5813 24 6 6.5474 -4.5717 4.1080 25 6 4.1435 -4.7928 4.7521 26 6 5.0589 -6.1428 2.8595 27 1 -1.0499 0.0002 0.0000 28 1 3.0090 0.8890 -0.5171 29 1 3.0098 -0.8911 -0.5105 30 1 1.4683 3.1247 0.2774 31 1 0.9807 -1.9162 1.6198 32 1 1.4249 -2.2415 -0.0895 33 1 2.8147 -5.5199 2.6230 34 1 1.9792 -4.2124 3.5251 35 1 6.5969 -3.6119 4.6221 36 1 6.8068 -5.3699 4.8034 37 1 7.2491 -4.5737 3.2739 38 1 3.1326 -4.9521 4.3768 39 1 4.4034 -5.5908 5.4474 40 1 4.1930 -3.8329 5.2662 41 1 5.8471 -6.1937 2.1084 42 1 5.1921 -6.9488 3.5811 43 1 4.0880 -6.2456 2.3748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281569222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:50 Heat of formation + Delta-G solvation = 13.049284 kcal Electronic energy + Delta-G solvation = -27178.699100 eV Core-core repulsion = 23546.071575 eV Total energy + Delta-G solvation = -3632.627525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.97286 -40.38115 -37.44354 -37.12321 -36.67449 -34.22951 -33.13300 -32.01090 -28.86620 -28.36494 -28.29787 -27.82432 -26.85188 -25.41575 -23.16733 -21.20927 -19.96676 -19.67086 -18.68771 -18.36630 -18.18737 -17.54130 -16.94017 -16.32012 -16.18671 -16.01024 -15.71885 -15.63273 -15.19222 -15.04528 -14.84053 -14.38584 -14.23290 -13.95620 -13.84938 -13.49546 -13.29788 -13.12552 -13.00468 -12.93873 -12.85996 -12.78715 -12.59140 -12.50915 -12.19181 -12.03715 -11.93352 -11.55484 -11.32446 -10.94318 -10.80551 -10.52603 -10.44654 -9.86386 -9.81430 -8.97017 -8.27840 -6.01531 0.51722 0.80091 1.34010 1.36227 1.41977 1.49961 1.75043 1.86079 2.10740 2.30382 2.44098 2.97967 3.03822 3.20818 3.40766 3.70908 3.73708 3.79561 3.86003 3.92736 4.00824 4.12588 4.21864 4.31996 4.45305 4.58677 4.67835 4.70330 4.78266 4.89026 4.92744 4.97554 5.01134 5.05331 5.18495 5.31870 5.36751 5.39305 5.47058 5.99869 6.15232 6.40076 7.05899 7.12772 7.18841 7.33871 7.89120 8.63860 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.005126 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.180518 B = 5461.276491 C = 6788.922987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.133 4.133 3 C 0.233 3.767 4 N -0.449 5.449 5 C -0.343 4.343 6 H 0.066 0.934 7 C 0.006 3.994 8 N -0.872 5.872 9 Si 0.986 3.014 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.282 1.282 13 C 0.441 3.559 14 O -0.607 6.607 15 C 0.128 3.872 16 H 0.096 0.904 17 C -0.045 4.045 18 S -0.257 6.257 19 C 0.143 3.857 20 N -0.598 5.598 21 C 0.534 3.466 22 O -0.571 6.571 23 C -0.078 4.078 24 C -0.123 4.123 25 C -0.155 4.155 26 C -0.139 4.139 27 H 0.230 0.770 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.273 0.727 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.029 0.971 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.106 0.894 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 -17.029 0.434 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.135 4.135 3 C 0.111 3.889 4 N -0.168 5.168 5 C -0.471 4.471 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.510 5.510 9 Si 0.810 3.190 10 H -0.198 1.198 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.228 3.772 14 O -0.493 6.493 15 C 0.018 3.982 16 H 0.114 0.886 17 C -0.194 4.194 18 S -0.030 6.030 19 C -0.088 4.088 20 N -0.332 5.332 21 C 0.323 3.677 22 O -0.448 6.448 23 C -0.082 4.082 24 C -0.181 4.181 25 C -0.212 4.212 26 C -0.196 4.196 27 H 0.247 0.753 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.124 0.876 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.869 -17.260 0.097 17.362 hybrid contribution 0.812 2.647 0.844 2.895 sum -1.057 -14.613 0.940 14.682 Atomic orbital electron populations 1.24984 0.96049 1.05694 0.99872 1.22905 0.94229 0.96093 1.00267 1.18374 0.85469 1.01786 0.83290 1.43744 1.56830 1.04579 1.11628 1.19437 1.27827 0.85063 1.14747 0.91641 1.25938 0.94629 1.01999 0.97133 1.69995 1.24846 1.29376 1.26751 0.85111 0.78430 0.77428 0.78000 1.19829 1.19075 1.20762 1.20855 0.83415 0.85877 0.87036 1.90473 1.51457 1.87236 1.20085 1.20999 0.96726 0.86183 0.94246 0.88639 1.24662 0.93023 0.94410 1.07263 1.88005 1.56052 1.12056 1.46898 1.25239 0.87836 0.98493 0.97277 1.48162 1.09206 1.25692 1.50175 1.21355 0.80000 0.85746 0.80589 1.90670 1.49151 1.46495 1.58491 1.20875 0.98613 0.93972 0.94696 1.21652 0.93462 1.01733 1.01224 1.22288 0.99221 1.02829 0.96850 1.22032 1.02856 0.93428 1.01273 0.75306 0.88587 0.90010 0.91631 0.89496 0.84349 0.82245 0.87756 0.95155 0.88223 0.92984 0.89949 0.87743 0.94837 0.92165 0.87575 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.12 18.52 74.32 1.38 -7.74 16 2 C -0.13 -5.51 7.51 31.13 0.23 -5.28 16 3 C 0.23 10.31 4.75 84.58 0.40 10.71 16 4 N -0.45 -23.50 2.59 -645.41 -1.67 -25.16 16 5 C -0.34 -19.80 9.34 84.04 0.79 -19.02 16 6 H 0.07 4.14 7.36 -2.91 -0.02 4.12 16 7 C 0.01 0.31 5.23 84.93 0.44 0.75 16 8 N -0.87 -44.37 8.54 21.66 0.19 -44.18 16 9 Si 0.99 43.28 29.56 68.60 2.03 45.31 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 C 0.44 22.49 6.19 87.66 0.54 23.03 16 14 O -0.61 -35.75 14.66 11.28 0.17 -35.59 16 15 C 0.13 5.00 2.09 44.97 0.09 5.09 16 16 H 0.10 3.69 7.20 -2.39 -0.02 3.67 16 17 C -0.04 -1.47 4.62 72.52 0.33 -1.14 16 18 S -0.26 -6.68 23.44 -56.49 -1.32 -8.01 16 19 C 0.14 3.51 5.34 127.56 0.68 4.19 16 20 N -0.60 -20.50 2.72 -807.22 -2.19 -22.69 16 21 C 0.53 19.70 5.46 87.66 0.48 20.18 16 22 O -0.57 -27.25 15.01 11.28 0.17 -27.08 16 23 C -0.08 -1.96 0.75 -52.92 -0.04 -2.00 16 24 C -0.12 -3.16 7.83 71.98 0.56 -2.59 16 25 C -0.15 -3.28 8.09 71.98 0.58 -2.70 16 26 C -0.14 -2.24 8.27 71.98 0.60 -1.65 16 27 H 0.23 6.60 7.80 -4.42 -0.03 6.57 16 28 H 0.10 4.59 6.56 -2.38 -0.02 4.57 16 29 H 0.08 3.06 5.84 -2.39 -0.01 3.05 16 30 H 0.27 13.25 8.31 -92.70 -0.77 12.48 16 31 H 0.09 3.27 6.92 -2.39 -0.02 3.26 16 32 H 0.14 4.24 5.80 -2.39 -0.01 4.22 16 33 H 0.16 2.70 4.19 -2.39 -0.01 2.69 16 34 H 0.10 2.50 6.81 -2.39 -0.02 2.48 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.43 7.98 -2.39 -0.02 1.41 16 38 H 0.08 1.52 3.76 -2.39 -0.01 1.51 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 0.94 8.14 -2.38 -0.02 0.93 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.03 5.09 -2.39 -0.01 1.02 16 Total: -1.00 -76.34 344.25 5.47 -70.87 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.03 Total: 24.70 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 7.07 Total: 21.84 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.68 Total: -92.04 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: 0.33 Total: -62.67 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -1.32 Total: -8.01 kcal Total: -76.34 5.47 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281569222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.916 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds