Wall clock time and date at job start Fri Apr 10 2020 18:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47330 * 2 1 4 4 N 1.46500 * 109.47152 * 239.99655 * 2 1 3 5 5 C 1.34782 * 119.99703 * 85.00168 * 4 2 1 6 6 O 1.21589 * 120.00165 * 0.02562 * 5 4 2 7 7 C 1.47537 * 119.99735 * 179.97438 * 5 4 2 8 8 C 1.39671 * 120.19830 * 0.02562 * 7 5 4 9 9 C 1.37823 * 119.91901 * 179.97438 * 8 7 5 10 10 C 1.38570 * 120.32256 * 0.02562 * 9 8 7 11 11 C 1.38020 * 120.40415 * 0.02562 * 10 9 8 12 12 C 1.38837 * 120.07262 * 359.68013 * 11 10 9 13 13 O 1.35518 * 120.16372 * 180.29996 * 12 11 10 14 14 C 1.34815 * 116.99761 * 354.39737 * 13 12 11 15 15 H 1.07990 * 120.00231 * 5.06518 * 14 13 12 16 16 C 1.38704 * 119.99757 * 185.06726 * 14 13 12 17 17 N 1.31523 * 120.00109 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00241 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46700 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47226 * 119.99474 * 18 16 14 21 21 H 1.48490 * 109.47305 * 240.00195 * 18 16 14 22 22 C 1.50703 * 109.46791 * 119.99974 * 2 1 3 23 23 O 1.21279 * 119.99889 * 119.99727 * 22 2 1 24 24 N 1.34777 * 120.00003 * 299.99551 * 22 2 1 25 25 C 1.46501 * 120.00014 * 179.72356 * 24 22 2 26 26 C 1.52994 * 109.47234 * 180.27907 * 25 24 22 27 27 F 1.39899 * 109.47361 * 180.02562 * 26 25 24 28 28 H 1.09003 * 109.47128 * 300.00616 * 1 2 3 29 29 H 1.09002 * 109.46826 * 59.99594 * 1 2 3 30 30 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00329 * 265.00622 * 4 2 1 32 32 H 1.07995 * 120.03624 * 0.02686 * 8 7 5 33 33 H 1.08000 * 119.83879 * 179.97438 * 9 8 7 34 34 H 1.08004 * 119.79415 * 179.97438 * 10 9 8 35 35 H 1.08006 * 119.96292 * 179.97438 * 11 10 9 36 36 H 0.96998 * 120.00289 * 180.02562 * 17 16 14 37 37 H 0.96995 * 120.00135 * 0.02562 * 24 22 2 38 38 H 1.08998 * 109.47023 * 300.27904 * 25 24 22 39 39 H 1.09000 * 109.46780 * 60.27367 * 25 24 22 40 40 H 1.09006 * 109.46960 * 299.99661 * 26 25 24 41 41 H 1.09001 * 109.47240 * 59.99702 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1616 -2.4117 7 6 2.6394 -0.7137 -3.5616 8 6 2.9728 -2.0688 -3.5035 9 6 3.4316 -2.7129 -4.6323 10 6 3.5649 -2.0224 -5.8263 11 6 3.2403 -0.6829 -5.8985 12 6 2.7707 -0.0191 -4.7731 13 8 2.4458 1.2946 -4.8435 14 6 2.7101 1.9292 -6.0032 15 1 3.0846 1.3732 -6.8498 16 6 2.5009 3.2963 -6.1090 17 7 2.0442 3.9734 -5.0781 18 14 2.8677 4.1758 -7.7156 19 1 3.3681 3.1960 -8.7131 20 1 1.6270 4.8126 -8.2258 21 1 3.9002 5.2177 -7.4850 22 6 2.0323 -0.7104 1.2305 23 8 2.7295 -1.6965 1.1193 24 7 1.7067 -0.2499 2.4546 25 6 2.1900 -0.9440 3.6508 26 6 1.6754 -0.2260 4.9000 27 9 2.1373 -0.8885 6.0423 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6318 -1.1526 32 1 2.8703 -2.6114 -2.5754 33 1 3.6894 -3.7606 -4.5858 34 1 3.9257 -2.5355 -6.7055 35 1 3.3473 -0.1515 -6.8327 36 1 1.8976 4.9294 -5.1521 37 1 1.1488 0.5386 2.5436 38 1 1.8261 -1.9715 3.6465 39 1 3.2800 -0.9446 3.6550 40 1 2.0393 0.8015 4.9042 41 1 0.5854 -0.2254 4.8956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282275754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:52 Heat of formation + Delta-G solvation = -147.288649 kcal Electronic energy + Delta-G solvation = -26800.190803 eV Core-core repulsion = 22594.397328 eV Total energy + Delta-G solvation = -4205.793476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.67681 -41.63108 -40.90178 -39.63775 -38.03476 -36.42033 -35.95770 -34.31040 -33.01671 -31.39486 -30.57449 -30.02881 -27.37417 -25.97537 -24.64209 -23.69322 -23.03065 -21.71908 -21.32469 -19.86118 -19.68142 -18.32847 -17.97723 -17.47672 -17.42862 -16.97767 -16.41595 -16.35234 -16.12822 -15.98528 -15.81829 -15.76198 -15.30809 -15.23672 -15.13977 -14.63122 -14.43250 -14.25162 -14.16003 -13.57802 -13.54168 -13.36557 -13.00523 -12.72871 -12.64671 -12.53601 -12.32880 -12.24728 -12.08881 -11.90976 -11.42845 -11.13662 -10.82873 -10.66411 -10.33813 -10.18888 -9.81852 -9.04380 -8.43535 -6.13772 0.10576 0.71754 1.34249 1.35556 1.44254 1.53454 1.64454 2.07347 2.16762 2.35639 2.88064 3.21947 3.45561 3.46192 3.50498 3.84621 3.90835 4.03230 4.07043 4.10453 4.13312 4.28636 4.33269 4.52036 4.56695 4.64133 4.65139 4.77771 4.86179 4.97571 5.08140 5.13548 5.17020 5.21235 5.41543 5.48022 5.59967 5.68900 5.97519 6.15376 6.27554 6.59208 6.96051 6.97321 7.40647 7.80353 8.76930 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.015782 B = 0.002831 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.725762 B = 9886.690706 C =11304.329094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 H 0.101 0.899 4 N -0.711 5.711 5 C 0.556 3.444 6 O -0.557 6.557 7 C -0.245 4.245 8 C -0.032 4.032 9 C -0.202 4.202 10 C -0.038 4.038 11 C -0.256 4.256 12 C 0.153 3.847 13 O -0.185 6.185 14 C -0.427 4.427 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.902 5.902 18 Si 1.021 2.979 19 H -0.247 1.247 20 H -0.268 1.268 21 H -0.270 1.270 22 C 0.525 3.475 23 O -0.564 6.564 24 N -0.706 5.706 25 C 0.087 3.913 26 C 0.058 3.942 27 F -0.225 7.225 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.411 0.589 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.271 0.729 37 H 0.422 0.578 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 -11.040 14.121 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.119 0.881 4 N -0.367 5.367 5 C 0.346 3.654 6 O -0.436 6.436 7 C -0.250 4.250 8 C -0.051 4.051 9 C -0.220 4.220 10 C -0.056 4.056 11 C -0.275 4.275 12 C 0.097 3.903 13 O -0.087 6.087 14 C -0.503 4.503 15 H 0.123 0.877 16 C -0.220 4.220 17 N -0.538 5.538 18 Si 0.840 3.160 19 H -0.170 1.170 20 H -0.193 1.193 21 H -0.195 1.195 22 C 0.311 3.689 23 O -0.442 6.442 24 N -0.360 5.360 25 C -0.037 4.037 26 C 0.003 3.997 27 F -0.206 7.206 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.167 0.833 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.260 0.740 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.073 -10.520 14.304 17.876 hybrid contribution 0.064 0.709 -0.612 0.939 sum -2.009 -9.810 13.692 16.963 Atomic orbital electron populations 1.22107 0.91104 1.03651 1.04075 1.20786 0.97045 0.97520 0.83037 0.88123 1.45505 1.68877 1.14548 1.07799 1.18401 0.77259 0.86093 0.83630 1.90921 1.50526 1.17001 1.85104 1.19213 1.17839 0.96293 0.91626 1.21263 0.93482 0.90434 0.99891 1.21147 1.07044 1.01629 0.92205 1.21427 0.93159 0.91908 0.99135 1.21313 1.10635 0.97294 0.98298 1.20006 0.91023 0.85309 0.93933 1.84167 1.69725 1.17742 1.37090 1.22064 1.46508 0.92200 0.89517 0.87655 1.26709 0.95849 0.96083 1.03322 1.70310 1.42382 1.08646 1.32438 0.84516 0.78452 0.78073 0.75004 1.17039 1.19296 1.19473 1.20462 0.79378 0.83929 0.85152 1.90692 1.38862 1.27663 1.87015 1.45446 1.53905 1.32614 1.04081 1.21901 1.00349 0.97540 0.83902 1.22179 1.01886 0.96453 0.79218 1.92770 1.91294 1.83732 1.52790 0.87501 0.93390 0.90851 0.75042 0.83266 0.82143 0.82728 0.85638 0.91995 0.73973 0.90614 0.91497 0.87990 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.38 71.98 0.68 -2.67 16 2 C 0.12 3.41 2.99 44.25 0.13 3.54 16 3 H 0.10 3.10 7.58 -2.39 -0.02 3.08 16 4 N -0.71 -24.00 4.90 -449.26 -2.20 -26.20 16 5 C 0.56 25.28 7.73 86.70 0.67 25.95 16 6 O -0.56 -31.52 14.83 16.90 0.25 -31.27 16 7 C -0.25 -10.92 5.89 -19.99 -0.12 -11.03 16 8 C -0.03 -1.06 9.54 22.52 0.21 -0.85 16 9 C -0.20 -5.81 10.02 22.25 0.22 -5.58 16 10 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 11 C -0.26 -11.03 9.16 22.36 0.20 -10.83 16 12 C 0.15 7.90 6.66 22.91 0.15 8.05 16 13 O -0.18 -11.62 7.84 0.85 0.01 -11.62 16 14 C -0.43 -25.55 9.49 67.93 0.64 -24.90 16 15 H 0.11 5.68 5.21 -2.92 -0.02 5.66 16 16 C -0.02 -1.18 5.49 84.85 0.47 -0.71 16 17 N -0.90 -57.72 13.67 21.62 0.30 -57.43 16 18 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 19 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 C 0.53 12.25 7.22 87.66 0.63 12.88 16 23 O -0.56 -16.89 15.84 -3.03 -0.05 -16.94 16 24 N -0.71 -9.97 5.45 -463.07 -2.52 -12.49 16 25 C 0.09 1.15 6.13 86.38 0.53 1.68 16 26 C 0.06 0.44 7.67 71.98 0.55 0.99 16 27 F -0.22 -3.31 17.36 44.97 0.78 -2.53 16 28 H 0.11 1.43 7.56 -2.39 -0.02 1.41 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.41 12.19 5.82 -92.71 -0.54 11.65 16 32 H 0.15 3.82 6.40 -2.91 -0.02 3.80 16 33 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.13 5.44 5.64 -2.91 -0.02 5.42 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.42 3.16 7.89 -92.71 -0.73 2.43 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -89.48 357.52 3.62 -85.86 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.17 Total: 31.41 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 5.20 Total: -4.49 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.43 Total: -96.12 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: 0.21 Total: -59.82 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -89.48 3.62 -85.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282275754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.425 kcal (2) G-P(sol) polarization free energy of solvation -89.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds