Wall clock time and date at job start Fri Apr 10 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99615 * 2 1 4 4 C 1.38237 * 119.99609 * 179.72891 * 3 2 1 5 5 C 1.38234 * 120.00087 * 0.26020 * 4 3 2 6 6 C 1.50694 * 119.99975 * 180.02562 * 5 4 3 7 7 S 1.81397 * 109.47510 * 89.99489 * 6 5 4 8 8 O 1.42099 * 110.54451 * 291.62452 * 7 6 5 9 9 O 1.42097 * 110.54252 * 68.37687 * 7 6 5 10 10 N 1.65605 * 104.44963 * 180.02562 * 7 6 5 11 11 C 1.46970 * 120.59029 * 269.71644 * 10 7 6 12 12 C 1.53816 * 108.39311 * 124.75862 * 11 10 7 13 13 N 1.46964 * 108.57933 * 49.64046 * 12 11 10 14 14 C 1.36939 * 120.59806 * 124.66324 * 13 12 11 15 15 H 1.07997 * 120.00619 * 208.14474 * 14 13 12 16 16 C 1.38810 * 119.99434 * 28.14532 * 14 13 12 17 17 N 1.31620 * 120.00442 * 17.57766 * 16 14 13 18 18 Si 1.86803 * 119.99918 * 197.57434 * 16 14 13 19 19 H 1.48500 * 109.47294 * 90.00258 * 18 16 14 20 20 H 1.48501 * 109.47105 * 210.00114 * 18 16 14 21 21 H 1.48505 * 109.47071 * 330.00184 * 18 16 14 22 22 C 1.46970 * 118.81009 * 304.64330 * 13 12 11 23 23 C 1.46964 * 120.59699 * 90.00085 * 10 7 6 24 24 C 1.38241 * 120.00070 * 0.02562 * 5 4 3 25 25 C 1.38234 * 119.99894 * 180.26462 * 2 1 3 26 26 H 1.08999 * 109.47823 * 89.99923 * 1 2 3 27 27 H 1.09006 * 109.47243 * 209.99845 * 1 2 3 28 28 H 1.09000 * 109.47208 * 329.99731 * 1 2 3 29 29 H 1.08002 * 120.00008 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.99440 * 180.27836 * 4 3 2 31 31 H 1.09004 * 109.47349 * 209.99709 * 6 5 4 32 32 H 1.09005 * 109.47283 * 329.98967 * 6 5 4 33 33 H 1.08991 * 109.60959 * 244.54099 * 11 10 7 34 34 H 1.09000 * 109.60823 * 5.05657 * 11 10 7 35 35 H 1.08998 * 109.74431 * 289.84908 * 12 11 10 36 36 H 1.09004 * 109.52705 * 169.29818 * 12 11 10 37 37 H 0.97005 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.60944 * 295.48018 * 22 13 12 39 39 H 1.09002 * 109.75070 * 175.05303 * 22 13 12 40 40 H 1.09004 * 109.60490 * 354.94581 * 23 10 7 41 41 H 1.08998 * 109.61061 * 115.45742 * 23 10 7 42 42 H 1.08000 * 119.99890 * 179.97438 * 24 5 4 43 43 H 1.07997 * 120.00649 * 0.03895 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0057 5 6 4.2717 0.0001 0.0059 6 6 5.7786 0.0001 0.0127 7 16 6.3757 -0.0038 1.7255 8 8 6.0767 1.2317 2.3607 9 8 6.0768 -1.2423 2.3549 10 7 8.0260 -0.0027 1.5879 11 6 8.7724 -1.2674 1.5288 12 6 9.6327 -1.2641 0.2537 13 7 10.3776 0.0014 0.1947 14 6 11.7423 0.0023 0.0809 15 1 12.3167 0.8263 0.4777 16 6 12.3872 -1.0559 -0.5444 17 7 11.7088 -1.8736 -1.3213 18 14 14.2180 -1.3195 -0.2834 19 1 14.4282 -2.2082 0.8877 20 1 14.8051 -1.9485 -1.4937 21 1 14.8762 -0.0114 -0.0365 22 6 9.6316 1.2660 0.2594 23 6 8.7709 1.2628 1.5288 24 6 3.5805 -1.1971 -0.0001 25 6 2.1982 -1.1971 -0.0055 26 1 -0.3635 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6580 2.1325 0.0004 30 1 4.1203 2.1325 0.0102 31 1 6.1443 -0.8887 -0.5016 32 1 6.1442 0.8913 -0.4976 33 1 9.4137 -1.3549 2.4058 34 1 8.0737 -2.1035 1.4984 35 1 8.9916 -1.3525 -0.6233 36 1 10.3325 -2.0994 0.2842 37 1 12.1596 -2.6129 -1.7586 38 1 8.9904 1.3578 -0.6172 39 1 10.3285 2.1035 0.2922 40 1 8.0711 2.0980 1.4984 41 1 9.4120 1.3512 2.4058 42 1 4.1206 -2.1324 -0.0003 43 1 1.6583 -2.1325 -0.0105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288268985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:56 Heat of formation + Delta-G solvation = -40.616285 kcal Electronic energy + Delta-G solvation = -25736.851018 eV Core-core repulsion = 22101.896379 eV Total energy + Delta-G solvation = -3634.954639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44423 -39.21024 -38.30141 -37.08613 -35.58122 -35.01768 -32.91954 -31.94384 -31.81743 -30.53567 -28.20911 -26.19208 -25.00469 -24.47293 -23.75991 -22.09338 -21.47118 -20.00059 -19.18313 -18.04092 -17.78037 -17.31892 -16.82971 -16.67653 -16.42159 -16.05864 -15.50276 -15.47325 -15.37470 -15.05223 -14.70205 -14.56586 -14.40945 -14.02562 -13.88098 -13.63814 -13.53186 -13.27261 -13.26235 -12.98993 -12.91250 -12.89576 -12.61426 -12.48410 -12.27898 -12.13708 -12.00088 -11.98928 -11.92557 -11.79231 -11.40850 -10.58764 -10.20030 -9.95555 -9.46980 -8.62126 -7.86097 -5.32030 -0.92272 0.31173 0.38160 1.48723 1.51302 1.57803 1.59518 2.52384 2.64749 2.81373 3.04197 3.28165 3.34679 3.64131 3.70120 3.82594 4.01638 4.03423 4.05284 4.29109 4.44281 4.46499 4.49286 4.49926 4.57264 4.66522 4.72221 4.80339 4.85162 4.88929 4.90607 5.09077 5.11791 5.23653 5.24510 5.31985 5.37416 5.46048 5.59554 5.61030 5.65319 5.76585 5.99316 6.39565 7.15016 7.84963 8.36918 9.18834 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.026996 B = 0.003068 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.957736 B = 9122.951787 C = 9386.245386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.567 4.567 7 S 2.611 3.389 8 O -0.978 6.978 9 O -0.983 6.983 10 N -0.994 5.994 11 C 0.106 3.894 12 C 0.162 3.838 13 N -0.608 5.608 14 C -0.261 4.261 15 H 0.068 0.932 16 C -0.047 4.047 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.270 1.270 22 C 0.126 3.874 23 C 0.109 3.891 24 C -0.120 4.120 25 C -0.128 4.128 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.015 0.985 36 H 0.069 0.931 37 H 0.251 0.749 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.134 0.866 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 4.564 1.520 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.697 4.697 7 S 2.709 3.291 8 O -0.968 6.968 9 O -0.974 6.974 10 N -0.831 5.831 11 C -0.020 4.020 12 C 0.034 3.966 13 N -0.331 5.331 14 C -0.391 4.391 15 H 0.086 0.914 16 C -0.243 4.243 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.214 1.214 20 H -0.224 1.224 21 H -0.195 1.195 22 C -0.001 4.001 23 C -0.018 4.018 24 C -0.139 4.139 25 C -0.146 4.146 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.177 0.823 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.033 0.967 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.700 4.458 2.279 21.297 hybrid contribution 1.623 -0.495 -0.831 1.889 sum -19.077 3.964 1.448 19.538 Atomic orbital electron populations 1.20886 0.88628 1.04046 1.03501 1.20472 0.98092 0.92829 0.97159 1.21410 0.93479 0.99207 1.00354 1.21458 0.95608 0.97664 0.98861 1.19156 0.91587 0.95213 1.06153 1.29530 1.01544 1.14174 1.24437 1.04986 0.72563 0.73263 0.78287 1.93513 1.83687 1.45922 1.73679 1.93514 1.83726 1.46087 1.74077 1.57467 1.23364 1.12711 1.89589 1.22152 0.95587 0.84205 1.00096 1.21119 0.93224 0.89943 0.92268 1.44158 1.02643 1.00979 1.85337 1.19510 0.82953 1.06711 1.29892 0.91411 1.25716 1.01521 1.00157 0.96880 1.70139 1.36757 1.19112 1.31712 0.85326 0.80911 0.77984 0.76537 1.21447 1.22372 1.19501 1.21484 0.94533 0.89210 0.94843 1.22001 0.95931 0.84188 0.99678 1.21450 0.95688 0.97733 0.99080 1.21387 0.93418 0.99276 1.00497 0.89791 0.90430 0.90256 0.83073 0.84168 0.83102 0.82347 0.92068 0.88823 0.96732 0.91300 0.94034 0.95154 0.90897 0.87603 0.91551 0.84770 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.24 0.71 -0.50 16 2 C -0.08 -1.49 5.88 -19.87 -0.12 -1.61 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 4 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 5 C -0.12 -2.95 5.14 -19.87 -0.10 -3.05 16 6 C -0.57 -13.99 6.30 71.23 0.45 -13.54 16 7 S 2.61 81.48 5.40 -56.49 -0.31 81.17 16 8 O -0.98 -33.62 16.70 -127.65 -2.13 -35.75 16 9 O -0.98 -35.72 16.69 -127.65 -2.13 -37.85 16 10 N -0.99 -33.44 3.19 -511.43 -1.63 -35.07 16 11 C 0.11 3.96 6.52 86.57 0.56 4.53 16 12 C 0.16 7.28 5.53 86.57 0.48 7.76 16 13 N -0.61 -28.68 2.97 -697.33 -2.07 -30.75 16 14 C -0.26 -13.65 9.58 84.03 0.80 -12.84 16 15 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 16 C -0.05 -2.52 4.90 84.86 0.42 -2.10 16 17 N -0.93 -52.64 11.20 21.65 0.24 -52.40 16 18 Si 0.96 43.61 29.59 68.60 2.03 45.64 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.13 4.73 6.67 86.41 0.58 5.31 16 23 C 0.11 3.52 6.48 86.41 0.56 4.08 16 24 C -0.12 -2.83 9.70 22.27 0.22 -2.61 16 25 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.69 8.09 -2.38 -0.02 0.67 16 28 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.15 3.48 8.09 -2.39 -0.02 3.46 16 32 H 0.16 3.30 8.09 -2.39 -0.02 3.28 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.09 3.15 7.05 -2.39 -0.02 3.13 16 35 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 3.53 5.99 -2.38 -0.01 3.52 16 37 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 40 H 0.11 2.86 7.06 -2.38 -0.02 2.84 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -69.60 362.41 0.20 -69.39 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.99 Total: 16.97 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.21 Total: -21.36 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -3.46 Total: -118.22 kcal Atomic # 8 Polarization: -69.33 SS G_CDS: -4.26 Total: -73.60 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 81.48 SS G_CDS: -0.31 Total: 81.17 kcal Total: -69.60 0.20 -69.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288268985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.777 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds