Wall clock time and date at job start Fri Apr 10 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00105 * 2 1 4 4 H 1.48501 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46939 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.47101 * 60.00010 * 3 2 1 7 7 C 1.37875 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99536 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00182 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00057 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99844 * 179.72682 * 11 10 9 14 14 N 1.46908 * 109.46825 * 174.89019 * 13 11 10 15 15 C 1.44266 * 110.99904 * 302.86788 * 14 13 11 16 16 C 1.54074 * 111.98124 * 219.31198 * 15 14 13 17 17 C 1.54290 * 112.28397 * 318.91450 * 16 15 14 18 18 C 1.50466 * 113.03320 * 318.30120 * 17 16 15 19 19 O 1.42894 * 109.57519 * 332.34362 * 18 17 16 20 20 C 1.53005 * 109.67400 * 212.02919 * 18 17 16 21 21 F 1.39901 * 109.47377 * 300.56734 * 20 18 17 22 22 F 1.39895 * 109.47155 * 60.57035 * 20 18 17 23 23 F 1.39906 * 109.46922 * 180.56751 * 20 18 17 24 24 C 1.54505 * 108.85306 * 92.15802 * 18 17 16 25 25 C 1.45860 * 111.59056 * 282.80847 * 24 18 17 26 26 H 0.97005 * 119.99812 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46955 * 60.00194 * 9 7 2 28 28 H 1.09001 * 109.47472 * 300.00585 * 9 7 2 29 29 H 0.97001 * 119.99628 * 0.02562 * 10 9 7 30 30 H 1.08994 * 109.47033 * 294.88562 * 13 11 10 31 31 H 1.09002 * 109.47360 * 54.89294 * 13 11 10 32 32 H 1.09001 * 108.97877 * 339.94830 * 15 14 13 33 33 H 1.08993 * 108.98525 * 98.66522 * 15 14 13 34 34 H 1.08995 * 108.91629 * 198.19231 * 16 15 14 35 35 H 1.08998 * 108.84612 * 79.58269 * 16 15 14 36 36 H 1.09007 * 108.76840 * 197.38729 * 17 16 15 37 37 H 1.08994 * 108.77490 * 79.21711 * 17 16 15 38 38 H 0.96700 * 113.99971 * 299.37282 * 19 18 17 39 39 H 1.08998 * 109.05528 * 162.26049 * 24 18 17 40 40 H 1.09003 * 109.05838 * 43.34945 * 24 18 17 41 41 H 1.09003 * 108.79110 * 300.43475 * 25 24 18 42 42 H 1.08997 * 108.79662 * 182.21687 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5612 -5.1050 -0.0006 13 6 2.7329 -6.0288 -0.0090 14 7 2.0031 -7.2977 0.1163 15 6 1.1971 -7.3146 1.3127 16 6 1.2173 -8.6923 2.0022 17 6 1.1340 -9.8542 0.9905 18 6 0.1456 -9.6020 -0.1156 19 8 -0.8826 -8.7266 0.3516 20 6 -0.4741 -10.9270 -0.5646 21 9 0.5348 -11.7845 -1.0161 22 9 -1.1413 -11.5187 0.5133 23 9 -1.3827 -10.6891 -1.6015 24 6 0.8831 -8.9464 -1.3044 25 6 1.1414 -7.5315 -1.0615 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6245 -2.5570 0.8896 29 1 3.1565 -3.4354 -0.0021 30 1 3.2924 -6.0223 -0.9443 31 1 3.4229 -5.9224 0.8281 32 1 1.5773 -6.5652 2.0069 33 1 0.1691 -7.0642 1.0512 34 1 0.3710 -8.7577 2.6859 35 1 2.1408 -8.7866 2.5734 36 1 0.8431 -10.7610 1.5209 37 1 2.1197 -10.0084 0.5515 38 1 -1.3871 -9.0759 1.0989 39 1 0.2726 -9.0479 -2.2016 40 1 1.8320 -9.4595 -1.4613 41 1 0.1900 -7.0224 -0.9072 42 1 1.6255 -7.1069 -1.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312829539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:01 Heat of formation + Delta-G solvation = -232.295787 kcal Electronic energy + Delta-G solvation = -29315.281588 eV Core-core repulsion = 24687.405491 eV Total energy + Delta-G solvation = -4627.876097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.37847 -47.89812 -47.80254 -40.37502 -38.73919 -36.19949 -34.16631 -33.07519 -32.69923 -32.36850 -29.35357 -27.49312 -26.30310 -24.84808 -23.69466 -22.47522 -20.68985 -20.34732 -19.59694 -18.95744 -18.59877 -18.37690 -17.08995 -16.69833 -15.82803 -15.78476 -15.37292 -14.93051 -14.82446 -14.72900 -14.63739 -14.44324 -14.37775 -14.25675 -14.09296 -14.02074 -13.94802 -13.43067 -13.13634 -12.90778 -12.48056 -12.19757 -12.06935 -11.84843 -11.71329 -11.47558 -11.11158 -11.02840 -10.98015 -10.88824 -10.75729 -10.56365 -10.34182 -10.08376 -9.65598 -9.40763 -8.76558 -7.94741 -7.90891 -6.19544 -4.26648 2.41368 3.21171 3.28442 3.30054 3.31338 3.42346 3.46995 3.67841 3.97569 4.10003 4.11766 4.35718 4.41815 4.54764 4.96055 5.05595 5.16595 5.22195 5.30075 5.35388 5.39988 5.51822 5.58998 5.67964 5.76451 5.81132 5.93651 5.99156 6.07888 6.39784 6.52842 7.05377 7.13634 7.21051 7.28239 7.41546 7.48328 7.63621 7.94173 8.58693 8.74529 9.05918 9.40282 10.90559 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002597 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.534704 B =10780.937110 C =10977.072224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.712 5.712 11 C 0.463 3.537 12 O -0.551 6.551 13 C 0.033 3.967 14 N -0.507 5.507 15 C 0.045 3.955 16 C -0.094 4.094 17 C -0.141 4.141 18 C 0.107 3.893 19 O -0.514 6.514 20 C 0.422 3.578 21 F -0.180 7.180 22 F -0.186 7.186 23 F -0.176 7.176 24 C -0.094 4.094 25 C 0.046 3.954 26 H 0.265 0.735 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.390 0.610 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.380 0.620 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 -22.528 1.040 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.360 5.360 11 C 0.246 3.754 12 O -0.431 6.431 13 C -0.098 4.098 14 N -0.229 5.229 15 C -0.084 4.084 16 C -0.133 4.133 17 C -0.179 4.179 18 C 0.064 3.936 19 O -0.320 6.320 20 C 0.367 3.633 21 F -0.161 7.161 22 F -0.168 7.168 23 F -0.158 7.158 24 C -0.132 4.132 25 C -0.081 4.081 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.223 0.777 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.229 0.771 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.384 -22.584 0.583 22.844 hybrid contribution -0.057 1.029 0.320 1.079 sum 3.327 -21.555 0.903 21.829 Atomic orbital electron populations 1.69987 1.06119 1.27200 1.48957 1.24963 0.94913 0.99496 0.94690 0.86365 0.79837 0.82968 0.77770 1.19618 1.20785 1.20796 1.21266 0.93273 0.90497 1.53119 0.91884 1.19076 0.88346 0.82140 0.97573 1.46582 1.11077 1.06469 1.71892 1.21739 0.90464 0.85310 0.77867 1.90655 1.16822 1.84589 1.50985 1.22439 0.96193 0.86816 1.04388 1.61990 1.28230 1.29578 1.03137 1.22094 0.99801 0.95113 0.91396 1.21765 1.01560 0.93606 0.96323 1.21928 1.00107 0.99629 0.96241 1.22203 0.88848 0.84620 0.97959 1.86833 1.48665 1.42695 1.53817 1.21788 0.77116 0.88840 0.75522 1.93176 1.60255 1.73159 1.89525 1.93152 1.81794 1.86126 1.55701 1.93198 1.68584 1.94410 1.59561 1.20699 0.99809 0.98137 0.94552 1.20917 0.99154 0.94830 0.93192 0.92500 0.95684 0.95691 0.77745 0.88284 0.88327 0.92624 0.89457 0.92069 0.91682 0.91746 0.89082 0.77069 0.90182 0.89355 0.89796 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.49 5.43 -5.20 -0.03 6.47 16 10 N -0.71 -14.30 5.55 -61.47 -0.34 -14.64 16 11 C 0.46 8.53 7.03 -10.98 -0.08 8.45 16 12 O -0.55 -12.13 12.41 5.56 0.07 -12.07 16 13 C 0.03 0.44 5.55 -4.97 -0.03 0.41 16 14 N -0.51 -6.43 4.45 -241.00 -1.07 -7.51 16 15 C 0.04 0.59 3.84 -4.67 -0.02 0.57 16 16 C -0.09 -0.92 5.64 -25.49 -0.14 -1.07 16 17 C -0.14 -1.27 4.58 -27.32 -0.13 -1.40 16 18 C 0.11 1.09 0.49 -91.09 -0.04 1.04 16 19 O -0.51 -5.77 8.82 -35.23 -0.31 -6.08 16 20 C 0.42 4.34 2.31 37.16 0.09 4.43 16 21 F -0.18 -1.85 16.75 2.25 0.04 -1.81 16 22 F -0.19 -1.87 16.12 2.25 0.04 -1.83 16 23 F -0.18 -2.07 16.51 2.25 0.04 -2.03 16 24 C -0.09 -1.01 4.53 -29.32 -0.13 -1.15 16 25 C 0.05 0.61 4.08 -6.71 -0.03 0.58 16 26 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 30 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 31 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 32 H 0.06 0.80 7.32 -51.93 -0.38 0.42 16 33 H 0.09 1.39 4.34 -51.93 -0.23 1.17 16 34 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.52 7.11 -51.93 -0.37 0.15 16 37 H 0.09 0.82 7.38 -51.93 -0.38 0.44 16 38 H 0.38 3.04 8.62 45.56 0.39 3.43 16 39 H 0.08 0.85 7.40 -51.93 -0.38 0.47 16 40 H 0.09 0.83 7.59 -51.93 -0.39 0.43 16 41 H 0.08 1.41 5.02 -51.93 -0.26 1.15 16 42 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -31.62 338.19 -6.48 -38.10 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.80 Total: 7.22 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.96 Total: 5.10 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.68 Total: -47.36 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.24 Total: -18.15 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.11 Total: -5.67 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.62 -6.48 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312829539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.195 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds