Wall clock time and date at job start Fri Apr 10 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00105 * 2 1 4 4 H 1.48501 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46939 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.47101 * 60.00010 * 3 2 1 7 7 C 1.37875 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99536 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00182 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00057 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99844 * 179.72682 * 11 10 9 14 14 N 1.46908 * 109.46825 * 174.89019 * 13 11 10 15 15 C 1.44266 * 110.99904 * 302.86788 * 14 13 11 16 16 C 1.54074 * 111.98124 * 219.31198 * 15 14 13 17 17 C 1.54290 * 112.28397 * 318.91450 * 16 15 14 18 18 C 1.50466 * 113.03320 * 318.30120 * 17 16 15 19 19 O 1.42894 * 109.57519 * 332.34362 * 18 17 16 20 20 C 1.53005 * 109.67400 * 212.02919 * 18 17 16 21 21 F 1.39901 * 109.47377 * 300.56734 * 20 18 17 22 22 F 1.39895 * 109.47155 * 60.57035 * 20 18 17 23 23 F 1.39906 * 109.46922 * 180.56751 * 20 18 17 24 24 C 1.54505 * 108.85306 * 92.15802 * 18 17 16 25 25 C 1.45860 * 111.59056 * 282.80847 * 24 18 17 26 26 H 0.97005 * 119.99812 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46955 * 60.00194 * 9 7 2 28 28 H 1.09001 * 109.47472 * 300.00585 * 9 7 2 29 29 H 0.97001 * 119.99628 * 0.02562 * 10 9 7 30 30 H 1.08994 * 109.47033 * 294.88562 * 13 11 10 31 31 H 1.09002 * 109.47360 * 54.89294 * 13 11 10 32 32 H 1.09001 * 108.97877 * 339.94830 * 15 14 13 33 33 H 1.08993 * 108.98525 * 98.66522 * 15 14 13 34 34 H 1.08995 * 108.91629 * 198.19231 * 16 15 14 35 35 H 1.08998 * 108.84612 * 79.58269 * 16 15 14 36 36 H 1.09007 * 108.76840 * 197.38729 * 17 16 15 37 37 H 1.08994 * 108.77490 * 79.21711 * 17 16 15 38 38 H 0.96700 * 113.99971 * 299.37282 * 19 18 17 39 39 H 1.08998 * 109.05528 * 162.26049 * 24 18 17 40 40 H 1.09003 * 109.05838 * 43.34945 * 24 18 17 41 41 H 1.09003 * 108.79110 * 300.43475 * 25 24 18 42 42 H 1.08997 * 108.79662 * 182.21687 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5612 -5.1050 -0.0006 13 6 2.7329 -6.0288 -0.0090 14 7 2.0031 -7.2977 0.1163 15 6 1.1971 -7.3146 1.3127 16 6 1.2173 -8.6923 2.0022 17 6 1.1340 -9.8542 0.9905 18 6 0.1456 -9.6020 -0.1156 19 8 -0.8826 -8.7266 0.3516 20 6 -0.4741 -10.9270 -0.5646 21 9 0.5348 -11.7845 -1.0161 22 9 -1.1413 -11.5187 0.5133 23 9 -1.3827 -10.6891 -1.6015 24 6 0.8831 -8.9464 -1.3044 25 6 1.1414 -7.5315 -1.0615 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5566 -0.8903 28 1 0.6245 -2.5570 0.8896 29 1 3.1565 -3.4354 -0.0021 30 1 3.2924 -6.0223 -0.9443 31 1 3.4229 -5.9224 0.8281 32 1 1.5773 -6.5652 2.0069 33 1 0.1691 -7.0642 1.0512 34 1 0.3710 -8.7577 2.6859 35 1 2.1408 -8.7866 2.5734 36 1 0.8431 -10.7610 1.5209 37 1 2.1197 -10.0084 0.5515 38 1 -1.3871 -9.0759 1.0989 39 1 0.2726 -9.0479 -2.2016 40 1 1.8320 -9.4595 -1.4613 41 1 0.1900 -7.0224 -0.9072 42 1 1.6255 -7.1069 -1.9408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312829539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:00 Heat of formation + Delta-G solvation = -257.530727 kcal Electronic energy + Delta-G solvation = -29316.375857 eV Core-core repulsion = 24687.405491 eV Total energy + Delta-G solvation = -4628.970366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.20745 -48.71579 -48.65151 -41.50418 -40.01046 -37.35351 -35.99353 -34.35420 -33.98343 -33.59331 -30.61303 -29.09318 -27.42011 -26.03026 -24.63039 -24.28750 -21.80247 -21.39844 -20.98162 -19.80540 -19.44401 -19.23700 -18.82440 -17.63384 -17.45798 -17.16066 -16.60138 -16.33085 -16.00015 -15.84044 -15.61461 -15.52570 -15.47550 -15.24188 -15.10203 -14.87344 -14.80619 -14.59903 -14.33399 -14.30638 -13.97828 -13.71860 -13.38065 -13.00094 -12.83970 -12.82476 -12.71814 -12.40521 -12.23677 -12.03987 -11.90864 -11.74006 -11.45797 -11.41530 -11.18267 -10.97059 -10.81651 -9.77737 -9.18883 -8.30119 -6.46868 1.42371 1.43212 1.56799 1.59254 1.80305 2.32627 2.61451 2.66306 2.67087 2.84476 2.96778 3.04731 3.31594 3.60981 3.73903 4.05178 4.07341 4.22919 4.31372 4.38494 4.43880 4.56941 4.61620 4.73196 4.89860 4.97922 5.04972 5.09253 5.11266 5.23659 5.25552 5.29810 5.45987 5.53411 5.71398 5.85665 5.98946 6.12299 6.45339 6.65592 6.95020 7.23313 7.54426 8.81929 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002597 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.534704 B =10780.937110 C =10977.072224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.709 5.709 11 C 0.459 3.541 12 O -0.590 6.590 13 C 0.043 3.957 14 N -0.490 5.490 15 C 0.046 3.954 16 C -0.087 4.087 17 C -0.136 4.136 18 C 0.109 3.891 19 O -0.534 6.534 20 C 0.426 3.574 21 F -0.177 7.177 22 F -0.184 7.184 23 F -0.187 7.187 24 C -0.096 4.096 25 C 0.053 3.947 26 H 0.268 0.732 27 H -0.017 1.017 28 H -0.017 1.017 29 H 0.408 0.592 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.391 0.609 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.042 0.958 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -23.535 1.368 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.360 5.360 11 C 0.245 3.755 12 O -0.472 6.472 13 C -0.088 4.088 14 N -0.212 5.212 15 C -0.083 4.083 16 C -0.125 4.125 17 C -0.173 4.173 18 C 0.066 3.934 19 O -0.342 6.342 20 C 0.371 3.629 21 F -0.158 7.158 22 F -0.165 7.165 23 F -0.169 7.169 24 C -0.133 4.133 25 C -0.075 4.075 26 H 0.077 0.923 27 H 0.000 1.000 28 H 0.001 0.999 29 H 0.243 0.757 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.242 0.758 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.060 0.940 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.314 -23.640 0.920 24.486 hybrid contribution -1.042 1.282 0.218 1.666 sum 5.272 -22.358 1.138 22.999 Atomic orbital electron populations 1.70152 1.08315 1.28434 1.50183 1.26082 0.95760 1.03978 0.93925 0.85119 0.79177 0.77353 0.77626 1.17487 1.20544 1.20527 1.21669 0.94308 0.90658 1.52546 0.89793 1.18450 0.88732 0.84666 0.93619 1.46343 1.11050 1.05870 1.72713 1.22917 0.90989 0.85774 0.75831 1.90664 1.19241 1.85123 1.52145 1.22639 0.94988 0.84004 1.07174 1.62174 1.27684 1.28527 1.02806 1.22057 0.97910 0.97008 0.91315 1.21697 1.02790 0.91645 0.96377 1.21902 1.00024 0.99738 0.95683 1.22227 0.88847 0.84209 0.98159 1.86837 1.49272 1.43537 1.54541 1.21761 0.76938 0.88896 0.75256 1.93181 1.60046 1.73083 1.89509 1.93158 1.81778 1.86077 1.55491 1.93178 1.69052 1.94500 1.60142 1.20701 1.00988 0.96755 0.94886 1.20826 0.97201 0.96065 0.93383 0.92331 0.99956 0.99916 0.75663 0.85324 0.85358 0.94093 0.92636 0.91202 0.90168 0.90158 0.88310 0.75783 0.90413 0.87122 0.93978 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.98 42.15 29.54 68.60 2.03 44.18 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -29.92 9.28 25.60 0.24 -29.68 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.63 5.43 85.63 0.46 15.10 16 10 N -0.71 -28.79 5.55 -466.80 -2.59 -31.38 16 11 C 0.46 17.08 7.03 87.66 0.62 17.70 16 12 O -0.59 -27.37 12.41 -3.02 -0.04 -27.41 16 13 C 0.04 1.04 5.55 85.56 0.48 1.52 16 14 N -0.49 -11.69 4.45 -916.40 -4.08 -15.76 16 15 C 0.05 1.19 3.84 87.16 0.33 1.52 16 16 C -0.09 -1.53 5.64 31.40 0.18 -1.35 16 17 C -0.14 -2.10 4.58 30.21 0.14 -1.96 16 18 C 0.11 2.07 0.49 -11.10 -0.01 2.07 16 19 O -0.53 -12.11 8.82 -148.98 -1.31 -13.43 16 20 C 0.43 8.16 2.31 71.98 0.17 8.33 16 21 F -0.18 -3.25 16.75 44.97 0.75 -2.50 16 22 F -0.18 -3.39 16.12 44.97 0.72 -2.66 16 23 F -0.19 -4.30 16.51 44.97 0.74 -3.55 16 24 C -0.10 -1.94 4.53 28.92 0.13 -1.81 16 25 C 0.05 1.37 4.08 83.94 0.34 1.71 16 26 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.10 16 28 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.41 13.47 8.32 -92.71 -0.77 12.69 16 30 H 0.13 2.43 7.92 -2.39 -0.02 2.41 16 31 H 0.13 2.43 8.11 -2.39 -0.02 2.41 16 32 H 0.04 1.16 7.32 -2.39 -0.02 1.14 16 33 H 0.06 1.84 4.34 -2.39 -0.01 1.83 16 34 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.03 7.11 -2.38 -0.02 1.02 16 37 H 0.10 1.43 7.38 -2.39 -0.02 1.41 16 38 H 0.39 6.27 8.62 -74.06 -0.64 5.63 16 39 H 0.08 1.61 7.40 -2.39 -0.02 1.59 16 40 H 0.11 1.77 7.59 -2.39 -0.02 1.75 16 41 H 0.04 1.48 5.02 -2.39 -0.01 1.47 16 42 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 Total: -1.00 -72.45 338.19 -0.27 -72.72 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.33 Total: 22.21 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 3.54 Total: 13.71 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -6.38 Total: -103.27 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.35 Total: -40.84 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 2.22 Total: -8.71 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -72.45 -0.27 -72.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312829539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.811 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds