Wall clock time and date at job start Fri Apr 10 2020 18:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46504 * 120.00489 * 275.00228 * 5 4 3 7 7 C 1.50699 * 109.46735 * 84.99745 * 6 5 4 8 8 H 1.07993 * 120.00519 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99503 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47274 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47086 * 120.00131 * 11 9 7 14 14 H 1.48496 * 109.47147 * 240.00307 * 11 9 7 15 15 S 1.65606 * 119.99697 * 95.00182 * 5 4 3 16 16 O 1.42101 * 106.40064 * 203.54110 * 15 5 4 17 17 O 1.42092 * 106.40182 * 336.45974 * 15 5 4 18 18 N 1.65596 * 107.21781 * 90.00201 * 15 5 4 19 19 C 1.47422 * 125.64946 * 269.68787 * 18 15 5 20 20 C 1.55127 * 104.72371 * 155.81692 * 19 18 15 21 21 C 1.55160 * 101.48340 * 37.30203 * 20 19 18 22 22 C 1.53006 * 110.86979 * 205.89878 * 21 20 19 23 23 F 1.39893 * 110.72509 * 82.69638 * 21 20 19 24 24 C 1.47028 * 125.64624 * 90.00135 * 18 15 5 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 31 31 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 32 32 H 1.08998 * 109.46958 * 204.99692 * 6 5 4 33 33 H 1.08993 * 109.46893 * 325.00027 * 6 5 4 34 34 H 0.97002 * 120.00435 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.37026 * 274.74815 * 19 18 15 36 36 H 1.09004 * 110.36202 * 37.07565 * 19 18 15 37 37 H 1.08996 * 111.19391 * 279.19625 * 20 19 18 38 38 H 1.09005 * 110.94001 * 155.29073 * 20 19 18 39 39 H 1.09000 * 109.46993 * 173.60870 * 22 21 20 40 40 H 1.08998 * 109.46970 * 293.60533 * 22 21 20 41 41 H 1.09000 * 109.47233 * 53.61136 * 22 21 20 42 42 H 1.08998 * 109.87941 * 300.43297 * 24 18 15 43 43 H 1.08999 * 109.88034 * 61.45466 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8951 -1.3782 7 6 2.6348 -1.3876 -1.7827 8 1 1.8292 -0.6839 -1.9318 9 6 2.4139 -2.7366 -1.9625 10 7 3.3947 -3.5936 -1.7804 11 14 0.7214 -3.3471 -2.4645 12 1 -0.2004 -2.1912 -2.6047 13 1 0.8181 -4.0627 -3.7622 14 1 0.2010 -4.2727 -1.4265 15 16 4.4454 1.5130 -2.5263 16 8 4.2757 0.7257 -3.6970 17 8 3.8178 2.7742 -2.3401 18 7 6.0733 1.7731 -2.3695 19 6 6.6984 2.8934 -1.6433 20 6 8.1092 2.3756 -1.2586 21 6 8.4851 1.5427 -2.5125 22 6 9.4907 0.4457 -2.1569 23 9 8.9925 2.3684 -3.5214 24 6 7.1345 0.9284 -2.9371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.9786 2.1764 0.0890 31 1 3.8515 0.5681 0.8409 32 1 4.7294 -1.1822 -2.1360 33 1 4.2774 -1.3374 -0.4214 34 1 3.2392 -4.5427 -1.9065 35 1 6.7759 3.7681 -2.2891 36 1 6.1250 3.1317 -0.7474 37 1 8.0692 1.7466 -0.3693 38 1 8.8033 3.2042 -1.1175 39 1 9.6521 -0.1943 -3.0243 40 1 10.4356 0.9011 -1.8605 41 1 9.1007 -0.1514 -1.3325 42 1 7.0495 -0.0857 -2.5470 43 1 7.0561 0.9153 -4.0242 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336930292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:08 Heat of formation + Delta-G solvation = -155.990120 kcal Electronic energy + Delta-G solvation = -28012.216714 eV Core-core repulsion = 23941.489865 eV Total energy + Delta-G solvation = -4070.726849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.72465 -38.06777 -37.51492 -36.65658 -35.22958 -35.13470 -32.40142 -32.17678 -29.74137 -29.34429 -26.64616 -26.25047 -25.39110 -22.65153 -22.60025 -21.71068 -20.57610 -18.69625 -17.38811 -17.07701 -16.58761 -16.45698 -15.62119 -15.33863 -15.25111 -15.15620 -14.80985 -14.49259 -14.24166 -14.08978 -13.63019 -13.38368 -13.15073 -12.88885 -12.54753 -12.47522 -12.33304 -12.28409 -12.08028 -11.74789 -11.64970 -11.55046 -11.45878 -11.23108 -11.13095 -10.91447 -10.85507 -10.75696 -10.62679 -10.52705 -10.30406 -9.90613 -9.56210 -8.96008 -8.69680 -8.25957 -8.04482 -5.88487 -3.82884 1.07330 3.38093 3.41690 3.46126 3.49966 3.96361 4.05595 4.30127 4.41803 4.47389 4.56288 4.59152 4.90866 5.05477 5.13265 5.32204 5.37728 5.45906 5.48544 5.51617 5.60806 5.62020 5.67478 5.74608 5.84858 5.86612 5.87981 5.89680 5.99075 6.10718 6.14900 6.28695 6.32582 6.39159 6.56832 7.28290 7.48078 7.66301 7.94389 8.12863 8.40141 9.17602 9.76257 11.22179 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.004917 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.080265 B = 5693.587351 C = 6550.833223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.333 6.333 3 C 0.041 3.959 4 C 0.139 3.861 5 N -0.986 5.986 6 C 0.261 3.739 7 C -0.482 4.482 8 H 0.072 0.928 9 C 0.055 3.945 10 N -0.907 5.907 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.287 1.287 15 S 2.789 3.211 16 O -0.955 6.955 17 O -0.991 6.991 18 N -1.024 6.024 19 C 0.122 3.878 20 C -0.148 4.148 21 C 0.105 3.895 22 C -0.165 4.165 23 F -0.202 7.202 24 C 0.104 3.896 25 H 0.079 0.921 26 H 0.026 0.974 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 11.122 5.193 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C -0.038 4.038 4 C 0.012 3.988 5 N -0.828 5.828 6 C 0.140 3.860 7 C -0.522 4.522 8 H 0.090 0.910 9 C -0.145 4.145 10 N -0.549 5.549 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.214 1.214 14 H -0.214 1.214 15 S 2.799 3.201 16 O -0.939 6.939 17 O -0.976 6.976 18 N -0.862 5.862 19 C -0.004 4.004 20 C -0.187 4.187 21 C 0.086 3.914 22 C -0.223 4.223 23 F -0.182 7.182 24 C -0.023 4.023 25 H 0.097 0.903 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.496 11.097 4.438 14.663 hybrid contribution -0.980 -0.359 -0.031 1.044 sum 7.516 10.737 4.407 13.827 Atomic orbital electron populations 1.22611 0.83643 1.02044 0.98305 1.88537 1.17202 1.24643 1.94660 1.22908 0.94973 0.86651 0.99280 1.21049 0.92699 0.96973 0.88048 1.57841 1.77793 1.19501 1.27659 1.19067 0.98087 0.71252 0.97641 1.21543 0.95872 0.91971 1.42794 0.91048 1.24833 0.96591 0.96798 0.96229 1.69921 1.31306 1.02129 1.51570 0.86587 0.85082 0.78603 0.77902 1.19814 1.21413 1.21360 1.01818 0.71509 0.72708 0.74060 1.93632 1.84022 1.70360 1.45861 1.93531 1.73515 1.43436 1.87075 1.59488 1.23891 1.35454 1.67354 1.21959 0.92955 0.89368 0.96095 1.23450 0.97124 1.00663 0.97447 1.21874 0.93509 0.90006 0.86027 1.22236 0.98651 0.97797 1.03568 1.92859 1.88599 1.74214 1.62542 1.22271 0.85103 0.94926 0.99974 0.90286 0.95563 0.95012 0.93594 0.93974 0.90707 0.90006 0.95007 0.94802 0.93285 0.91206 0.90386 0.88546 0.89056 0.90864 0.91102 0.89902 0.89335 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.90 101.05 1.10 1.65 16 2 O -0.33 -6.88 6.62 -35.23 -0.23 -7.11 16 3 C 0.04 0.72 6.22 37.16 0.23 0.95 16 4 C 0.14 2.33 5.81 -4.04 -0.02 2.31 16 5 N -0.99 -19.87 2.86 -115.67 -0.33 -20.20 16 6 C 0.26 6.38 5.04 -5.19 -0.03 6.35 16 7 C -0.48 -13.24 7.22 -34.44 -0.25 -13.49 16 8 H 0.07 1.99 6.09 -52.49 -0.32 1.67 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.91 -26.59 13.29 55.43 0.74 -25.85 16 11 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 S 2.79 55.48 6.26 -107.50 -0.67 54.81 16 16 O -0.95 -23.01 16.69 -57.17 -0.95 -23.97 16 17 O -0.99 -20.26 16.69 -57.17 -0.95 -21.21 16 18 N -1.02 -15.89 3.75 -111.28 -0.42 -16.31 16 19 C 0.12 1.46 6.99 -2.41 -0.02 1.44 16 20 C -0.15 -1.39 6.35 -24.46 -0.16 -1.55 16 21 C 0.11 1.19 1.60 -88.78 -0.14 1.05 16 22 C -0.16 -1.46 8.93 37.16 0.33 -1.13 16 23 F -0.20 -2.62 16.97 2.25 0.04 -2.58 16 24 C 0.10 1.47 6.40 -3.06 -0.02 1.46 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.02 7.61 -51.93 -0.40 0.62 16 31 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 32 H 0.03 0.83 7.61 -51.93 -0.40 0.43 16 33 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.78 8.03 -51.93 -0.42 0.37 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 42 H 0.09 1.24 7.82 -51.93 -0.41 0.84 16 43 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.38 364.01 -8.36 -42.74 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.97 Total: -3.43 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.94 Total: 0.50 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.01 Total: -62.36 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -2.14 Total: -52.29 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 55.48 SS G_CDS: -0.67 Total: 54.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.38 -8.36 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336930292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.250 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds