Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46504 * 120.00489 * 275.00228 * 5 4 3 7 7 C 1.50699 * 109.46735 * 84.99745 * 6 5 4 8 8 H 1.07993 * 120.00519 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99503 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.47274 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47086 * 120.00131 * 11 9 7 14 14 H 1.48496 * 109.47147 * 240.00307 * 11 9 7 15 15 S 1.65606 * 119.99697 * 95.00182 * 5 4 3 16 16 O 1.42101 * 106.40064 * 203.54110 * 15 5 4 17 17 O 1.42092 * 106.40182 * 336.45974 * 15 5 4 18 18 N 1.65596 * 107.21781 * 90.00201 * 15 5 4 19 19 C 1.47422 * 125.64946 * 269.68787 * 18 15 5 20 20 C 1.55127 * 104.72371 * 155.81692 * 19 18 15 21 21 C 1.55160 * 101.48340 * 37.30203 * 20 19 18 22 22 C 1.53006 * 110.86979 * 205.89878 * 21 20 19 23 23 F 1.39893 * 110.72509 * 82.69638 * 21 20 19 24 24 C 1.47028 * 125.64624 * 90.00135 * 18 15 5 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 31 31 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 32 32 H 1.08998 * 109.46958 * 204.99692 * 6 5 4 33 33 H 1.08993 * 109.46893 * 325.00027 * 6 5 4 34 34 H 0.97002 * 120.00435 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.37026 * 274.74815 * 19 18 15 36 36 H 1.09004 * 110.36202 * 37.07565 * 19 18 15 37 37 H 1.08996 * 111.19391 * 279.19625 * 20 19 18 38 38 H 1.09005 * 110.94001 * 155.29073 * 20 19 18 39 39 H 1.09000 * 109.46993 * 173.60870 * 22 21 20 40 40 H 1.08998 * 109.46970 * 293.60533 * 22 21 20 41 41 H 1.09000 * 109.47233 * 53.61136 * 22 21 20 42 42 H 1.08998 * 109.87941 * 300.43297 * 24 18 15 43 43 H 1.08999 * 109.88034 * 61.45466 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8951 -1.3782 7 6 2.6348 -1.3876 -1.7827 8 1 1.8292 -0.6839 -1.9318 9 6 2.4139 -2.7366 -1.9625 10 7 3.3947 -3.5936 -1.7804 11 14 0.7214 -3.3471 -2.4645 12 1 -0.2004 -2.1912 -2.6047 13 1 0.8181 -4.0627 -3.7622 14 1 0.2010 -4.2727 -1.4265 15 16 4.4454 1.5130 -2.5263 16 8 4.2757 0.7257 -3.6970 17 8 3.8178 2.7742 -2.3401 18 7 6.0733 1.7731 -2.3695 19 6 6.6984 2.8934 -1.6433 20 6 8.1092 2.3756 -1.2586 21 6 8.4851 1.5427 -2.5125 22 6 9.4907 0.4457 -2.1569 23 9 8.9925 2.3684 -3.5214 24 6 7.1345 0.9284 -2.9371 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.9786 2.1764 0.0890 31 1 3.8515 0.5681 0.8409 32 1 4.7294 -1.1822 -2.1360 33 1 4.2774 -1.3374 -0.4214 34 1 3.2392 -4.5427 -1.9065 35 1 6.7759 3.7681 -2.2891 36 1 6.1250 3.1317 -0.7474 37 1 8.0692 1.7466 -0.3693 38 1 8.8033 3.2042 -1.1175 39 1 9.6521 -0.1943 -3.0243 40 1 10.4356 0.9011 -1.8605 41 1 9.1007 -0.1514 -1.3325 42 1 7.0495 -0.0857 -2.5470 43 1 7.0561 0.9153 -4.0242 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336930292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = -181.012985 kcal Electronic energy + Delta-G solvation = -28013.301786 eV Core-core repulsion = 23941.489865 eV Total energy + Delta-G solvation = -4071.811921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.67911 -39.09974 -38.98757 -38.33202 -36.91273 -36.77595 -34.44705 -33.12488 -30.98516 -30.64241 -28.41834 -27.24020 -26.88875 -24.51627 -23.65715 -23.16251 -21.49387 -20.09200 -18.94652 -18.67732 -18.26424 -17.68118 -17.11475 -16.90207 -16.39377 -16.30167 -16.20706 -16.05533 -15.76194 -15.18585 -15.11494 -14.67695 -14.38209 -14.11158 -13.99074 -13.91481 -13.69716 -13.42127 -13.26822 -13.22650 -13.09280 -12.97976 -12.94513 -12.71597 -12.64583 -12.51378 -12.34678 -12.25287 -11.95636 -11.82059 -11.78649 -11.48304 -11.38720 -10.45133 -10.21306 -10.13149 -9.75820 -8.03250 -6.02349 -0.46950 1.38524 1.42130 1.51773 1.98820 2.47427 2.56482 3.01847 3.09589 3.28086 3.36310 3.47811 3.61671 3.75344 3.97037 4.18334 4.22290 4.28077 4.40633 4.47433 4.53550 4.58856 4.60472 4.63967 4.65861 4.74656 4.86292 4.92094 4.93250 4.98801 5.02435 5.05970 5.18659 5.25270 5.31450 5.37815 5.58700 5.88909 6.01672 6.32054 6.57890 7.02077 7.59085 9.06568 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.004917 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.080265 B = 5693.587351 C = 6550.833223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.035 3.965 4 C 0.130 3.870 5 N -0.989 5.989 6 C 0.279 3.721 7 C -0.484 4.484 8 H 0.064 0.936 9 C 0.004 3.996 10 N -0.938 5.938 11 Si 0.938 3.062 12 H -0.267 1.267 13 H -0.291 1.291 14 H -0.277 1.277 15 S 2.803 3.197 16 O -1.007 7.007 17 O -0.999 6.999 18 N -1.021 6.021 19 C 0.107 3.893 20 C -0.135 4.135 21 C 0.106 3.894 22 C -0.162 4.162 23 F -0.212 7.212 24 C 0.093 3.907 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.010 0.990 33 H 0.026 0.974 34 H 0.258 0.742 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.688 12.619 7.084 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.289 6.289 3 C -0.044 4.044 4 C 0.004 3.996 5 N -0.830 5.830 6 C 0.156 3.844 7 C -0.523 4.523 8 H 0.082 0.918 9 C -0.192 4.192 10 N -0.581 5.581 11 Si 0.765 3.235 12 H -0.191 1.191 13 H -0.218 1.218 14 H -0.203 1.203 15 S 2.814 3.186 16 O -0.991 6.991 17 O -0.983 6.983 18 N -0.862 5.862 19 C -0.018 4.018 20 C -0.173 4.173 21 C 0.086 3.914 22 C -0.219 4.219 23 F -0.193 7.193 24 C -0.033 4.033 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.171 12.626 6.346 16.846 hybrid contribution -1.163 -0.713 -0.616 1.497 sum 8.008 11.914 5.730 15.456 Atomic orbital electron populations 1.22713 0.82420 1.02006 0.99828 1.88441 1.18818 1.26652 1.94945 1.23095 0.95299 0.85709 1.00288 1.21433 0.92619 0.98805 0.86735 1.57671 1.78661 1.17621 1.29011 1.18572 0.95991 0.73699 0.96155 1.21820 0.96906 0.91916 1.41696 0.91790 1.25518 0.99613 0.97294 0.96799 1.70012 1.32828 1.02262 1.52998 0.85812 0.81844 0.78354 0.77494 1.19078 1.21791 1.20287 1.01064 0.72303 0.72030 0.73181 1.93560 1.85413 1.71630 1.48541 1.93508 1.74515 1.43233 1.87021 1.59077 1.22656 1.36727 1.67778 1.22365 0.94650 0.88195 0.96542 1.23495 0.95600 1.01401 0.96823 1.22014 0.92173 0.90851 0.86336 1.22251 0.98847 0.97103 1.03727 1.92840 1.88549 1.74569 1.63353 1.22457 0.86761 0.95145 0.98984 0.91189 0.92053 0.95389 0.95357 0.89994 0.87045 0.88839 0.97230 0.95619 0.93323 0.91080 0.88418 0.86605 0.86370 0.91354 0.88997 0.89010 0.89696 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.90 113.37 1.24 2.15 16 2 O -0.37 -14.95 6.62 -148.98 -0.99 -15.94 16 3 C 0.03 1.15 6.22 71.98 0.45 1.60 16 4 C 0.13 4.08 5.81 86.38 0.50 4.58 16 5 N -0.99 -39.52 2.86 -519.86 -1.48 -41.01 16 6 C 0.28 13.88 5.04 85.63 0.43 14.32 16 7 C -0.48 -26.99 7.22 25.60 0.18 -26.80 16 8 H 0.06 3.62 6.09 -2.91 -0.02 3.60 16 9 C 0.00 0.23 5.46 84.66 0.46 0.69 16 10 N -0.94 -55.92 13.29 21.45 0.28 -55.64 16 11 Si 0.94 45.88 29.54 68.60 2.03 47.91 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 15 S 2.80 111.88 6.26 -56.49 -0.35 111.52 16 16 O -1.01 -50.38 16.69 -128.00 -2.14 -52.52 16 17 O -1.00 -40.03 16.69 -128.00 -2.14 -42.17 16 18 N -1.02 -30.99 3.75 -505.99 -1.90 -32.89 16 19 C 0.11 2.28 6.99 86.93 0.61 2.89 16 20 C -0.13 -2.07 6.35 32.06 0.20 -1.87 16 21 C 0.11 2.19 1.60 -9.60 -0.02 2.18 16 22 C -0.16 -2.50 8.93 71.98 0.64 -1.86 16 23 F -0.21 -5.20 16.97 44.97 0.76 -4.44 16 24 C 0.09 2.64 6.40 86.73 0.55 3.20 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.11 2.65 7.61 -2.39 -0.02 2.63 16 31 H 0.09 2.73 8.00 -2.39 -0.02 2.72 16 32 H 0.01 0.53 7.61 -2.39 -0.02 0.51 16 33 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 34 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.12 1.39 8.03 -2.39 -0.02 1.37 16 38 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.27 8.11 -2.39 -0.02 1.25 16 42 H 0.08 2.45 7.82 -2.39 -0.02 2.43 16 43 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -75.98 364.01 0.32 -75.66 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.99 Total: 8.44 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.26 Total: 1.07 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -3.10 Total: -129.53 kcal Atomic # 8 Polarization: -105.36 SS G_CDS: -5.26 Total: -110.62 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.76 Total: -4.44 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 111.88 SS G_CDS: -0.35 Total: 111.52 kcal Total: -75.98 0.32 -75.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336930292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.355 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds