Wall clock time and date at job start Fri Apr 10 2020 18:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47214 * 269.99995 * 3 2 1 5 5 H 1.48497 * 109.47035 * 30.00332 * 3 2 1 6 6 H 1.48501 * 109.47168 * 150.00280 * 3 2 1 7 7 C 1.38951 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00083 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99808 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99856 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99828 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00086 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47260 * 179.97438 * 12 10 9 14 14 C 1.34775 * 120.00092 * 180.02562 * 13 12 10 15 15 O 1.21287 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00286 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.47523 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47487 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47267 * 180.02562 * 18 17 16 20 20 C 1.35956 * 117.00026 * 179.97438 * 19 18 17 21 21 C 1.38657 * 120.06128 * 359.97438 * 20 19 18 22 22 C 1.38184 * 119.96964 * 180.02562 * 21 20 19 23 23 C 1.38265 * 120.09281 * 359.97438 * 22 21 20 24 24 C 1.38248 * 120.12705 * 0.02562 * 23 22 21 25 25 C 1.38332 * 120.03366 * 359.97438 * 24 23 22 26 26 F 1.35103 * 120.05240 * 180.02562 * 25 24 23 27 27 H 0.97002 * 120.00363 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00142 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.47335 * 59.99965 * 12 10 9 30 30 H 1.09001 * 109.47323 * 299.99970 * 12 10 9 31 31 H 0.97000 * 120.00081 * 359.97438 * 13 12 10 32 32 H 1.09004 * 109.46976 * 60.00006 * 16 14 13 33 33 H 1.09001 * 109.47011 * 300.00149 * 16 14 13 34 34 H 1.09007 * 109.47098 * 60.00288 * 17 16 14 35 35 H 1.09001 * 109.47491 * 300.00335 * 17 16 14 36 36 H 1.08994 * 109.46599 * 59.99869 * 18 17 16 37 37 H 1.09001 * 109.46881 * 300.00527 * 18 17 16 38 38 H 1.08004 * 120.01774 * 0.03769 * 21 20 19 39 39 H 1.08000 * 119.95526 * 180.27319 * 22 21 20 40 40 H 1.08001 * 119.93128 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.98480 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5606 -2.3705 -0.0021 13 7 6.0490 -3.7518 -0.0027 14 6 7.3741 -3.9980 -0.0023 15 8 8.1622 -3.0761 -0.0019 16 6 7.8765 -5.4188 -0.0024 17 6 9.4064 -5.4188 -0.0025 18 6 9.9165 -6.8613 -0.0032 19 8 11.3454 -6.8613 -0.0027 20 6 11.9627 -8.0726 -0.0027 21 6 11.2088 -9.2363 -0.0026 22 6 11.8381 -10.4666 -0.0020 23 6 13.2189 -10.5389 -0.0021 24 6 13.9744 -9.3811 -0.0022 25 6 13.3499 -8.1468 -0.0028 26 9 14.0878 -7.0151 -0.0034 27 1 -0.4851 0.8400 0.0004 28 1 3.8648 -0.3633 -0.0014 29 1 5.9240 -1.8574 0.8884 30 1 5.9240 -1.8559 -0.8916 31 1 5.4187 -4.4890 -0.0027 32 1 7.5135 -5.9325 -0.8926 33 1 7.5128 -5.9328 0.8874 34 1 9.7699 -4.9050 0.8875 35 1 9.7698 -4.9049 -0.8925 36 1 9.5531 -7.3747 -0.8933 37 1 9.5532 -7.3756 0.8866 38 1 10.1302 -9.1813 -0.0031 39 1 11.2507 -11.3728 -0.0064 40 1 13.7081 -11.5018 -0.0013 41 1 15.0528 -9.4403 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343549201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:28 Heat of formation + Delta-G solvation = -161.020029 kcal Electronic energy + Delta-G solvation = -25136.696783 eV Core-core repulsion = 20930.307870 eV Total energy + Delta-G solvation = -4206.388913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.83133 -41.17195 -40.91714 -40.02113 -38.50317 -36.31308 -35.33852 -34.87017 -33.84203 -31.65191 -31.00398 -29.90335 -27.96142 -26.12959 -24.25370 -23.41450 -22.42610 -21.48040 -21.31181 -20.49898 -19.44658 -18.58674 -17.96829 -17.59626 -17.57357 -17.33897 -16.93388 -16.89799 -16.50812 -16.42454 -15.90778 -15.77952 -15.43575 -15.26681 -14.96682 -14.60112 -14.58863 -14.25510 -14.00281 -13.77770 -13.65137 -13.19935 -13.14273 -12.96701 -12.78417 -12.45928 -12.41326 -12.32832 -12.01694 -11.92939 -11.60573 -11.59192 -11.03320 -10.66430 -10.34460 -10.17201 -9.93143 -9.21386 -8.46678 -6.08620 0.13954 0.28343 1.30043 1.32936 1.42645 1.60720 1.78982 1.83260 2.18972 2.25366 2.62475 2.89198 3.09703 3.25952 3.62282 3.78673 3.90895 3.91037 3.96272 4.06439 4.20959 4.29845 4.34092 4.37679 4.41096 4.43682 4.45754 4.60579 4.68346 4.99967 5.03910 5.11516 5.18123 5.27702 5.29462 5.45012 5.47669 5.73655 5.87274 6.32361 6.46798 6.52767 6.77265 7.17472 7.29459 7.76776 8.69640 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.039298 B = 0.001596 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.335749 B =17538.728452 C =18220.013643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.958 3.042 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.579 5.579 10 C 0.445 3.555 11 O -0.613 6.613 12 C 0.116 3.884 13 N -0.710 5.710 14 C 0.511 3.489 15 O -0.585 6.585 16 C -0.125 4.125 17 C -0.099 4.099 18 C 0.059 3.941 19 O -0.336 6.336 20 C 0.078 3.922 21 C -0.186 4.186 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.119 4.119 25 C 0.025 3.975 26 F -0.154 7.154 27 H 0.281 0.719 28 H 0.391 0.609 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.416 0.584 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.550 -20.216 0.008 33.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.219 5.219 10 C 0.233 3.767 11 O -0.499 6.499 12 C -0.012 4.012 13 N -0.365 5.365 14 C 0.300 3.700 15 O -0.465 6.465 16 C -0.164 4.164 17 C -0.137 4.137 18 C -0.015 4.015 19 O -0.251 6.251 20 C 0.032 3.968 21 C -0.205 4.205 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.138 4.138 25 C 0.005 3.995 26 F -0.133 7.133 27 H 0.091 0.909 28 H 0.227 0.773 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.255 0.745 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 26.571 -19.892 0.009 33.192 hybrid contribution -0.488 1.326 0.001 1.413 sum 26.084 -18.566 0.010 32.017 Atomic orbital electron populations 1.69773 1.07994 1.29450 1.49230 1.26038 0.96401 1.02501 0.95708 0.85460 0.79550 0.77182 0.80031 1.18147 1.19820 1.15739 1.19043 0.80978 0.95298 1.50816 0.91719 1.41951 1.06158 1.07492 1.66268 1.20519 0.90079 0.83855 0.82295 1.90524 1.70776 1.32211 1.56393 1.20862 0.89485 0.85954 1.04893 1.45782 1.07723 1.08367 1.74620 1.21247 0.81044 0.92972 0.74745 1.90703 1.56047 1.48069 1.51714 1.21509 0.95190 0.91893 1.07825 1.21130 0.93862 0.95050 1.03691 1.23024 0.76572 0.98201 1.03749 1.86092 1.23417 1.26833 1.88741 1.19334 0.91004 0.86321 1.00102 1.21543 1.01603 0.91090 1.06220 1.21509 0.95077 0.97887 0.95802 1.21374 0.93996 0.98613 1.00653 1.21338 1.02214 0.89776 1.00446 1.17594 0.86660 0.83496 1.11715 1.91447 1.76826 1.50370 1.94699 0.90915 0.77293 0.88143 0.88042 0.74537 0.85487 0.85489 0.91811 0.91807 0.89406 0.89418 0.82258 0.81860 0.81793 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.85 13.96 21.66 0.30 -53.55 16 2 C -0.01 -0.34 5.50 84.93 0.47 0.13 16 3 Si 0.96 37.86 27.74 68.60 1.90 39.76 16 4 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 7 C -0.33 -18.65 10.16 84.04 0.85 -17.79 16 8 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 9 N -0.58 -26.21 5.09 -306.99 -1.56 -27.77 16 10 C 0.45 18.85 7.85 87.65 0.69 19.54 16 11 O -0.61 -30.54 15.24 -3.08 -0.05 -30.58 16 12 C 0.12 3.65 6.15 85.63 0.53 4.18 16 13 N -0.71 -19.63 5.53 -466.78 -2.58 -22.21 16 14 C 0.51 13.01 7.83 87.66 0.69 13.70 16 15 O -0.58 -19.41 15.98 -3.05 -0.05 -19.46 16 16 C -0.12 -1.86 5.70 29.85 0.17 -1.69 16 17 C -0.10 -1.77 4.87 30.59 0.15 -1.62 16 18 C 0.06 0.80 4.74 71.98 0.34 1.15 16 19 O -0.34 -7.26 10.00 -93.06 -0.93 -8.19 16 20 C 0.08 1.48 6.69 22.53 0.15 1.63 16 21 C -0.19 -2.18 9.04 22.36 0.20 -1.97 16 22 C -0.08 -0.67 10.04 22.26 0.22 -0.45 16 23 C -0.13 -1.05 10.04 22.28 0.22 -0.83 16 24 C -0.12 -1.55 10.02 22.29 0.22 -1.32 16 25 C 0.02 0.50 7.31 22.45 0.16 0.67 16 26 F -0.15 -3.89 17.11 44.97 0.77 -3.12 16 27 H 0.28 14.98 8.31 -92.71 -0.77 14.20 16 28 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 29 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.42 11.15 7.44 -92.71 -0.69 10.46 16 32 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 35 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.09 0.82 7.66 -2.39 -0.02 0.80 16 37 H 0.09 0.81 7.66 -2.39 -0.02 0.80 16 38 H 0.16 1.07 6.30 -2.91 -0.02 1.05 16 39 H 0.16 0.27 8.06 -2.91 -0.02 0.24 16 40 H 0.16 0.31 8.06 -2.91 -0.02 0.28 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -79.93 360.80 2.68 -77.25 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -0.19 Total: 32.56 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 5.07 Total: 15.31 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.84 Total: -103.53 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -1.03 Total: -58.23 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.77 Total: -3.12 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Total: -79.93 2.68 -77.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343549201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.770 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds