Wall clock time and date at job start Fri Apr 10 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46995 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00134 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00004 * 179.97438 * 14 13 12 17 17 C 1.37091 * 119.99807 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00109 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99681 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00229 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 59.99973 * 21 19 17 23 23 H 1.48503 * 109.46811 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46951 * 299.99818 * 21 19 17 25 25 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 26 26 F 1.35100 * 120.04992 * 180.28191 * 25 7 6 27 27 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 30 30 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 34 34 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 35 35 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 36 36 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 37 37 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47222 * 299.99832 * 13 12 10 39 39 H 1.09002 * 109.47197 * 60.00305 * 13 12 10 40 40 H 0.97001 * 119.99893 * 0.02562 * 16 14 13 41 41 H 0.96997 * 119.99670 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 9.7249 2.6008 -2.5994 14 6 10.2333 2.5041 -4.0148 15 8 9.4507 2.3816 -4.9333 16 7 11.5576 2.5548 -4.2600 17 6 12.0201 2.4674 -5.5476 18 1 11.3232 2.3583 -6.3655 19 6 13.3855 2.5191 -5.8004 20 7 14.2334 2.6523 -4.8053 21 14 14.0156 2.4007 -7.5550 22 1 13.4595 3.5198 -8.3572 23 1 15.4984 2.4814 -7.5549 24 1 13.5897 1.1074 -8.1476 25 6 3.4333 1.2856 0.0005 26 9 4.1713 0.1540 0.0068 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2136 2.3200 -0.0005 31 1 1.3340 4.5115 -0.0011 32 1 3.7914 4.6406 -0.0014 33 1 5.8742 3.5527 0.4339 34 1 5.9715 1.7822 0.5899 35 1 5.7671 1.5542 -1.8708 36 1 5.6698 3.3246 -2.0267 37 1 7.7818 2.4218 -3.4364 38 1 10.0373 3.5503 -2.1648 39 1 10.1331 1.7796 -2.0102 40 1 12.1835 2.6531 -3.5255 41 1 15.1865 2.6880 -4.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344106877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:34 Heat of formation + Delta-G solvation = -141.545843 kcal Electronic energy + Delta-G solvation = -25790.388007 eV Core-core repulsion = 21584.843558 eV Total energy + Delta-G solvation = -4205.544449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.96230 -40.40078 -39.62013 -38.27796 -37.91530 -34.48736 -33.97101 -33.64628 -31.38640 -30.66019 -30.07266 -27.90638 -27.51612 -25.07531 -23.97833 -22.90948 -21.46860 -20.07440 -19.53121 -18.43407 -18.10362 -17.42076 -17.30199 -17.04335 -16.46916 -15.65590 -15.63934 -15.41126 -15.27777 -15.09276 -14.87524 -14.52814 -14.36441 -14.11727 -13.86279 -13.39028 -13.17471 -12.97549 -12.85474 -12.44170 -12.29320 -12.14832 -11.96063 -11.82878 -11.62873 -11.44353 -11.36483 -11.13035 -11.09427 -10.50531 -10.31278 -9.74755 -9.62550 -9.06549 -8.78372 -8.63029 -8.56126 -8.10007 -6.51134 -3.93245 0.74327 0.90187 2.72544 2.83961 3.14139 3.14840 3.21766 3.25121 3.43860 3.74406 3.93116 4.11484 4.30021 4.40772 4.62774 4.69515 4.74909 4.81562 4.85447 4.88568 4.90711 5.03736 5.12230 5.17319 5.25011 5.48522 5.56068 5.65469 5.76340 5.92650 5.93523 5.97448 5.98260 6.07974 6.10834 6.28619 6.69374 6.89247 7.46056 7.81658 7.92092 8.43562 8.47661 9.04682 9.39455 9.87456 10.65633 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.001872 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.601673 B =14954.248138 C =15237.216435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.095 3.905 4 C -0.189 4.189 5 C -0.088 4.088 6 C -0.124 4.124 7 C -0.075 4.075 8 C -0.065 4.065 9 C -0.134 4.134 10 C 0.512 3.488 11 O -0.551 6.551 12 N -0.708 5.708 13 C 0.108 3.892 14 C 0.427 3.573 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.072 3.928 26 F -0.128 7.128 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.411 0.589 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.253 0.606 11.539 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.049 3.951 4 C -0.207 4.207 5 C -0.106 4.106 6 C -0.143 4.143 7 C -0.076 4.076 8 C -0.102 4.102 9 C -0.174 4.174 10 C 0.298 3.702 11 O -0.429 6.429 12 N -0.362 5.362 13 C -0.019 4.019 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.052 3.948 26 F -0.106 7.106 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.249 0.751 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.973 0.377 11.649 28.468 hybrid contribution 0.396 -0.146 -0.842 0.942 sum -25.576 0.232 10.807 27.767 Atomic orbital electron populations 1.23116 0.77915 1.04335 1.01451 1.86152 1.21719 1.25814 1.88678 1.19010 0.90770 0.85682 0.99636 1.21127 1.00224 0.91575 1.07818 1.21000 0.94556 0.97192 0.97845 1.20941 0.93478 0.97802 1.02035 1.19872 0.96989 0.90918 0.99856 1.20298 0.88187 1.05325 0.96417 1.21598 0.92345 1.04995 0.98466 1.20508 0.89794 0.76349 0.83531 1.90688 1.70710 1.50047 1.31462 1.45740 1.07133 1.73430 1.09862 1.20954 0.80903 1.03118 0.96967 1.19762 0.83775 0.85636 0.89511 1.90494 1.55461 1.56959 1.45542 1.41793 1.04881 1.62045 1.09634 1.19683 0.91488 1.47799 0.84568 0.87727 1.25332 0.95730 0.96770 0.99892 1.69607 1.03415 1.48817 1.31623 0.85865 0.77385 0.79155 0.81509 1.19787 1.20851 1.19771 1.16844 0.85813 0.82850 1.09281 1.91513 1.76323 1.48690 1.94097 0.92390 0.87917 0.92469 0.84636 0.84975 0.84561 0.89134 0.89447 0.88643 0.88463 0.75082 0.89851 0.89866 0.77022 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.10 10.36 -19.61 -0.20 -3.30 16 3 C 0.10 0.96 6.69 -39.18 -0.26 0.70 16 4 C -0.19 -1.40 9.04 -39.45 -0.36 -1.76 16 5 C -0.09 -0.60 10.04 -39.59 -0.40 -0.99 16 6 C -0.12 -0.98 9.68 -39.57 -0.38 -1.37 16 7 C -0.08 -0.76 5.14 -104.58 -0.54 -1.29 16 8 C -0.06 -0.71 4.41 -27.89 -0.12 -0.83 16 9 C -0.13 -1.52 5.68 -27.88 -0.16 -1.68 16 10 C 0.51 7.88 7.83 -10.98 -0.09 7.79 16 11 O -0.55 -10.10 15.98 5.56 0.09 -10.01 16 12 N -0.71 -11.73 5.53 -61.46 -0.34 -12.07 16 13 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 14 C 0.43 9.86 7.85 -10.98 -0.09 9.77 16 15 O -0.60 -15.36 15.24 5.55 0.08 -15.28 16 16 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 17 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.07 0.83 7.25 -39.29 -0.28 0.54 16 26 F -0.13 -1.72 16.41 2.25 0.04 -1.68 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.14 0.65 6.30 -52.48 -0.33 0.32 16 31 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.09 0.94 8.01 -51.93 -0.42 0.53 16 34 H 0.09 1.08 7.74 -51.92 -0.40 0.68 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.41 6.67 7.44 -40.82 -0.30 6.37 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -33.17 362.49 -6.22 -39.39 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.04 Total: 12.81 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.96 Total: 6.08 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.33 Total: -49.05 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.03 Total: -28.59 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.17 -6.22 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344106877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.155 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds