Wall clock time and date at job start Fri Apr 10 2020 18:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46995 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00134 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00004 * 179.97438 * 14 13 12 17 17 C 1.37091 * 119.99807 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00109 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99681 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00229 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99742 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47118 * 59.99973 * 21 19 17 23 23 H 1.48503 * 109.46811 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46951 * 299.99818 * 21 19 17 25 25 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 26 26 F 1.35100 * 120.04992 * 180.28191 * 25 7 6 27 27 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 30 30 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 34 34 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 35 35 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 36 36 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 37 37 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47222 * 299.99832 * 13 12 10 39 39 H 1.09002 * 109.47197 * 60.00305 * 13 12 10 40 40 H 0.97001 * 119.99893 * 0.02562 * 16 14 13 41 41 H 0.96997 * 119.99670 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 9.7249 2.6008 -2.5994 14 6 10.2333 2.5041 -4.0148 15 8 9.4507 2.3816 -4.9333 16 7 11.5576 2.5548 -4.2600 17 6 12.0201 2.4674 -5.5476 18 1 11.3232 2.3583 -6.3655 19 6 13.3855 2.5191 -5.8004 20 7 14.2334 2.6523 -4.8053 21 14 14.0156 2.4007 -7.5550 22 1 13.4595 3.5198 -8.3572 23 1 15.4984 2.4814 -7.5549 24 1 13.5897 1.1074 -8.1476 25 6 3.4333 1.2856 0.0005 26 9 4.1713 0.1540 0.0068 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2136 2.3200 -0.0005 31 1 1.3340 4.5115 -0.0011 32 1 3.7914 4.6406 -0.0014 33 1 5.8742 3.5527 0.4339 34 1 5.9715 1.7822 0.5899 35 1 5.7671 1.5542 -1.8708 36 1 5.6698 3.3246 -2.0267 37 1 7.7818 2.4218 -3.4364 38 1 10.0373 3.5503 -2.1648 39 1 10.1331 1.7796 -2.0102 40 1 12.1835 2.6531 -3.5255 41 1 15.1865 2.6880 -4.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344106877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:34 Heat of formation + Delta-G solvation = -164.863665 kcal Electronic energy + Delta-G solvation = -25791.399144 eV Core-core repulsion = 21584.843558 eV Total energy + Delta-G solvation = -4206.555586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.83241 -41.14993 -40.88393 -39.93464 -38.70070 -36.26669 -35.30118 -34.81120 -33.38311 -31.29707 -30.94376 -29.17343 -28.17289 -26.65881 -25.21872 -23.54213 -22.24116 -21.39959 -21.25580 -20.06614 -19.12263 -18.53125 -18.10578 -17.89580 -17.32660 -17.10434 -16.95185 -16.90237 -16.34632 -16.04161 -15.91238 -15.70808 -15.64008 -15.46238 -15.04656 -14.53107 -14.31256 -13.97813 -13.80878 -13.64115 -13.53718 -13.40461 -13.02030 -12.92388 -12.89518 -12.48967 -12.47656 -12.13815 -12.07705 -11.97500 -11.94102 -11.56924 -11.03478 -10.57064 -10.20261 -10.08763 -9.75400 -9.21319 -8.51434 -6.01924 0.09090 0.26859 1.37737 1.42470 1.53539 1.59325 1.90461 2.03061 2.20514 2.32165 2.58654 3.12253 3.15510 3.27394 3.52597 3.85143 3.87894 4.02503 4.05483 4.18095 4.26513 4.30171 4.38781 4.39130 4.41172 4.44177 4.49920 4.62508 4.72434 4.87590 5.00387 5.08325 5.14876 5.29284 5.33507 5.37799 5.45565 5.69437 5.90939 6.31511 6.45122 6.53295 7.02581 7.16637 7.43498 7.93539 8.65141 Molecular weight = 324.13amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.001872 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.601673 B =14954.248138 C =15237.216435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.081 3.919 4 C -0.183 4.183 5 C -0.078 4.078 6 C -0.125 4.125 7 C -0.083 4.083 8 C -0.059 4.059 9 C -0.124 4.124 10 C 0.514 3.486 11 O -0.580 6.580 12 N -0.709 5.709 13 C 0.120 3.880 14 C 0.432 3.568 15 O -0.624 6.624 16 N -0.559 5.559 17 C -0.339 4.339 18 H 0.087 0.913 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.034 3.966 26 F -0.151 7.151 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.414 0.586 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.399 0.601 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.152 1.946 11.368 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.035 3.965 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.143 4.143 7 C -0.084 4.084 8 C -0.097 4.097 9 C -0.164 4.164 10 C 0.302 3.698 11 O -0.461 6.461 12 N -0.364 5.364 13 C -0.008 4.008 14 C 0.219 3.781 15 O -0.512 6.512 16 N -0.195 5.195 17 C -0.468 4.468 18 H 0.105 0.895 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.195 1.195 25 C 0.014 3.986 26 F -0.130 7.130 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.182 0.818 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.252 0.748 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.233 0.767 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.893 1.717 11.497 30.219 hybrid contribution 0.858 -0.554 -0.729 1.255 sum -27.035 1.163 10.769 29.124 Atomic orbital electron populations 1.23421 0.75662 1.05754 1.02837 1.86111 1.24192 1.26353 1.88802 1.19233 0.90511 0.86698 1.00030 1.21507 1.01573 0.90808 1.06259 1.21438 0.94298 0.98220 0.95624 1.21246 0.94176 0.97729 1.01137 1.19816 0.96271 0.91303 1.00982 1.20191 0.89203 1.04613 0.95665 1.21607 0.89051 1.06274 0.99422 1.21164 0.91248 0.74930 0.82428 1.90675 1.71689 1.51346 1.32374 1.45787 1.06193 1.73827 1.10543 1.20774 0.82296 1.04041 0.93667 1.20448 0.83001 0.83632 0.91032 1.90469 1.56014 1.57630 1.47135 1.41850 1.05654 1.62830 1.09138 1.19710 0.92000 1.49940 0.85172 0.89548 1.26151 0.95391 0.95766 1.03879 1.69675 1.03806 1.48766 1.33307 0.84915 0.77217 0.79083 0.76684 1.19409 1.19603 1.19543 1.17289 0.86782 0.82709 1.11826 1.91439 1.76988 1.49962 1.94584 0.90990 0.86706 0.90930 0.81803 0.81493 0.82479 0.88572 0.91792 0.88255 0.85712 0.74754 0.88647 0.89126 0.76711 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.71 10.36 -93.08 -0.96 -7.68 16 3 C 0.08 1.58 6.69 22.53 0.15 1.73 16 4 C -0.18 -2.21 9.04 22.35 0.20 -2.01 16 5 C -0.08 -0.78 10.04 22.26 0.22 -0.55 16 6 C -0.12 -1.65 9.68 22.28 0.22 -1.44 16 7 C -0.08 -1.60 5.14 -19.84 -0.10 -1.70 16 8 C -0.06 -1.28 4.41 29.85 0.13 -1.15 16 9 C -0.12 -2.71 5.68 29.85 0.17 -2.54 16 10 C 0.51 15.55 7.83 87.66 0.69 16.24 16 11 O -0.58 -21.22 15.98 -3.03 -0.05 -21.26 16 12 N -0.71 -23.18 5.53 -466.76 -2.58 -25.76 16 13 C 0.12 4.43 6.15 85.63 0.53 4.96 16 14 C 0.43 20.10 7.85 87.66 0.69 20.78 16 15 O -0.62 -32.44 15.24 -3.06 -0.05 -32.48 16 16 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 17 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 18 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 19 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 20 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 21 Si 1.00 41.90 29.55 68.60 2.03 43.93 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 C 0.03 0.78 7.25 22.46 0.16 0.95 16 26 F -0.15 -4.33 16.41 44.97 0.74 -3.59 16 27 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.38 7.66 -2.39 -0.02 0.37 16 30 H 0.16 0.95 6.30 -2.91 -0.02 0.93 16 31 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.10 1.93 8.01 -2.39 -0.02 1.91 16 34 H 0.06 1.67 7.74 -2.38 -0.02 1.65 16 35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.41 13.24 7.44 -92.71 -0.69 12.55 16 38 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 41 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -72.94 362.49 2.91 -70.04 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.33 Total: 36.94 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.45 Total: 18.44 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.92 Total: -104.32 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -1.06 Total: -61.43 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.74 Total: -3.59 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -72.94 2.91 -70.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344106877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.825 kcal (2) G-P(sol) polarization free energy of solvation -72.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds