Wall clock time and date at job start Fri Apr 10 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35250 * 126.69448 * 2 1 4 4 C 1.42024 * 103.95766 * 179.97438 * 3 2 1 5 5 N 1.39496 * 126.89221 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00654 * 0.02562 * 5 4 3 7 7 O 1.21283 * 119.99385 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00625 * 180.27312 * 6 5 4 9 9 N 1.46491 * 109.47288 * 179.72354 * 8 6 5 10 10 C 1.46504 * 120.00258 * 90.00139 * 9 8 6 11 11 C 1.34780 * 120.00021 * 269.99633 * 9 8 6 12 12 O 1.21285 * 119.99673 * 0.02562 * 11 9 8 13 13 C 1.50693 * 120.00022 * 180.02562 * 11 9 8 14 14 H 1.08992 * 109.47657 * 39.99986 * 13 11 9 15 15 N 1.46908 * 109.47176 * 160.00355 * 13 11 9 16 16 C 1.52997 * 109.47332 * 279.99955 * 13 11 9 17 17 C 1.52998 * 109.47632 * 175.00320 * 16 13 11 18 18 C 1.50701 * 109.47475 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99915 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00251 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99524 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47147 * 89.99742 * 22 20 18 24 24 H 1.48501 * 109.47187 * 210.00072 * 22 20 18 25 25 H 1.48501 * 109.46797 * 330.00215 * 22 20 18 26 26 N 1.30724 * 106.20870 * 0.22883 * 4 3 2 27 27 O 1.20913 * 111.47491 * 359.59593 * 26 4 3 28 28 H 1.08997 * 109.46909 * 90.00104 * 1 2 3 29 29 H 1.08995 * 109.46994 * 210.00094 * 1 2 3 30 30 H 1.08996 * 109.46876 * 330.00268 * 1 2 3 31 31 H 1.07998 * 128.01917 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99394 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46801 * 299.72313 * 8 6 5 34 34 H 1.09000 * 109.46987 * 59.71544 * 8 6 5 35 35 H 1.08997 * 109.47158 * 89.99875 * 10 9 8 36 36 H 1.09006 * 109.46934 * 209.99831 * 10 9 8 37 37 H 1.08999 * 109.46793 * 329.99358 * 10 9 8 38 38 H 1.00896 * 110.99771 * 59.99720 * 15 13 11 39 39 H 1.00895 * 111.00139 * 183.95237 * 15 13 11 40 40 H 1.09002 * 109.47443 * 295.00101 * 16 13 11 41 41 H 1.08999 * 109.47133 * 54.99881 * 16 13 11 42 42 H 1.08999 * 109.46938 * 300.00026 * 17 16 13 43 43 H 1.08999 * 109.47219 * 59.99614 * 17 16 13 44 44 H 0.97005 * 119.99383 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3153 1.0845 0.0000 4 6 3.6251 0.5356 0.0006 5 7 4.8287 1.2408 0.0004 6 6 4.8201 2.5885 0.0000 7 8 3.7659 3.1881 -0.0006 8 6 6.1203 3.3504 -0.0065 9 7 5.8433 4.7889 -0.0123 10 6 5.7078 5.5140 1.2535 11 6 5.7132 5.4454 -1.1822 12 8 5.8250 4.8451 -2.2301 13 6 5.4288 6.9253 -1.1882 14 1 6.0109 7.4103 -0.4047 15 7 5.7983 7.4897 -2.4932 16 6 3.9382 7.1593 -0.9350 17 6 3.6704 8.6610 -0.8171 18 6 2.2022 8.8914 -0.5671 19 1 1.5276 8.0507 -0.4987 20 6 1.7203 10.1753 -0.4246 21 7 2.5419 11.1990 -0.5073 22 14 -0.0994 10.4609 -0.1140 23 1 -0.3569 10.4677 1.3486 24 1 -0.5014 11.7677 -0.6935 25 1 -0.8866 9.3741 -0.7500 26 7 3.4765 -0.7632 -0.0041 27 8 2.3083 -1.0751 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 2.0305 2.1262 -0.0004 32 1 5.6718 0.7612 0.0012 33 1 6.6956 3.0948 0.8833 34 1 6.6915 3.0867 -0.8966 35 1 6.6833 5.8881 1.5641 36 1 5.0228 6.3515 1.1209 37 1 5.3163 4.8418 2.0170 38 1 5.2718 7.0561 -3.2368 39 1 5.6776 8.4914 -2.5013 40 1 3.3603 6.7513 -1.7643 41 1 3.6448 6.6641 -0.0094 42 1 4.2482 9.0691 0.0122 43 1 3.9638 9.1562 -1.7426 44 1 2.2028 12.1022 -0.4067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424064573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:21 Heat of formation + Delta-G solvation = -3.031966 kcal Electronic energy + Delta-G solvation = -27590.917733 eV Core-core repulsion = 23547.132752 eV Total energy + Delta-G solvation = -4043.784980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.04238 -40.68099 -39.43062 -36.01584 -35.54331 -35.29832 -33.82490 -32.86042 -32.36036 -29.92225 -29.37063 -28.02597 -26.83973 -25.96817 -24.15544 -23.39193 -21.81664 -20.97579 -20.41426 -19.02245 -17.87756 -17.72686 -17.48352 -17.37959 -16.83350 -16.30756 -15.95252 -15.49831 -15.08945 -14.58129 -14.36800 -14.24129 -13.95466 -13.75583 -13.71968 -13.52848 -13.29382 -13.02847 -12.70074 -12.67887 -12.58251 -12.16631 -12.12993 -11.80812 -11.67675 -11.44719 -11.03600 -10.92737 -10.68422 -10.42847 -9.95471 -9.93483 -9.59238 -9.28907 -9.21935 -9.07181 -8.80399 -8.43212 -8.21179 -6.07978 -4.10616 1.19230 1.78527 2.11522 2.61015 2.85498 2.91094 3.00235 3.27596 3.34325 3.38296 4.02133 4.35412 4.40062 4.54030 4.67830 4.86676 4.88342 5.02174 5.08483 5.11713 5.13068 5.19894 5.28377 5.33260 5.46039 5.56785 5.57808 5.74984 5.76971 5.79020 6.17865 6.22783 6.34513 6.56734 6.81183 6.89542 7.22403 7.51567 7.54488 7.63147 7.69269 7.88370 7.90168 8.09447 8.29269 8.33208 8.95398 9.54250 11.02959 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.003228 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.796119 B = 8671.097387 C =10628.259584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.024 4.024 3 C -0.226 4.226 4 C 0.251 3.749 5 N -0.635 5.635 6 C 0.501 3.499 7 O -0.490 6.490 8 C 0.106 3.894 9 N -0.604 5.604 10 C 0.072 3.928 11 C 0.534 3.466 12 O -0.534 6.534 13 C 0.077 3.923 14 H 0.098 0.902 15 N -0.831 5.831 16 C -0.138 4.138 17 C 0.025 3.975 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 N -0.395 5.395 27 O 0.093 5.907 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.418 0.582 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.345 0.655 39 H 0.355 0.645 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -20.595 4.846 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.249 4.249 4 C 0.002 3.998 5 N -0.288 5.288 6 C 0.286 3.714 7 O -0.360 6.360 8 C -0.021 4.021 9 N -0.339 5.339 10 C -0.070 4.070 11 C 0.324 3.676 12 O -0.409 6.409 13 C -0.038 4.038 14 H 0.116 0.884 15 N -0.363 5.363 16 C -0.177 4.177 17 C -0.012 4.012 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 N -0.112 5.112 27 O 0.033 5.967 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.207 0.793 32 H 0.255 0.745 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.644 -21.483 4.420 22.648 hybrid contribution -1.879 0.979 0.294 2.139 sum 3.765 -20.504 4.713 21.373 Atomic orbital electron populations 1.20362 0.83653 1.04762 1.04334 1.24459 0.96523 0.85746 1.02026 1.22778 0.89320 1.02282 1.10484 1.20557 0.88651 0.88817 1.01801 1.42636 1.06017 1.06567 1.73578 1.21809 0.93586 0.80601 0.75364 1.90721 1.32529 1.67619 1.45147 1.21133 0.92802 0.82059 1.06142 1.47461 1.72720 1.06086 1.07587 1.22037 1.02355 0.98202 0.84442 1.21013 0.73994 0.90249 0.82377 1.90628 1.49470 1.69469 1.31349 1.21482 0.98084 0.89718 0.94517 0.88369 1.58770 1.63960 1.10355 1.03251 1.22414 0.91703 1.01995 1.01611 1.19102 0.97031 0.87822 0.97218 1.21186 0.93458 0.92155 1.49231 0.92692 1.25004 0.97820 0.96205 0.95266 1.69953 1.34636 0.98573 1.50117 0.86589 0.85406 0.77595 0.78421 1.20606 1.21165 1.19877 1.74015 0.97717 1.13125 1.26366 1.84771 1.10425 1.32393 1.69115 0.89222 0.89789 0.88730 0.79250 0.74545 0.86803 0.86234 0.92076 0.89014 0.91223 0.84158 0.82963 0.92686 0.92019 0.96348 0.96438 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 36.01 0.38 -0.09 16 2 C -0.02 -0.25 7.48 -35.37 -0.26 -0.52 16 3 C -0.23 -2.90 9.79 -39.20 -0.38 -3.29 16 4 C 0.25 3.22 8.18 -154.82 -1.27 1.96 16 5 N -0.63 -6.67 5.42 -11.43 -0.06 -6.73 16 6 C 0.50 6.14 7.86 -10.99 -0.09 6.06 16 7 O -0.49 -7.96 13.71 5.55 0.08 -7.88 16 8 C 0.11 1.05 5.89 -5.20 -0.03 1.02 16 9 N -0.60 -7.84 2.36 -182.96 -0.43 -8.27 16 10 C 0.07 0.78 9.85 59.85 0.59 1.37 16 11 C 0.53 8.95 6.92 -10.99 -0.08 8.88 16 12 O -0.53 -10.37 15.83 5.55 0.09 -10.28 16 13 C 0.08 1.32 2.37 -68.87 -0.16 1.16 16 14 H 0.10 1.56 7.21 -51.93 -0.37 1.19 16 15 N -0.83 -14.42 8.94 -5.66 -0.05 -14.47 16 16 C -0.14 -2.77 4.45 -26.73 -0.12 -2.89 16 17 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 18 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 19 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 22 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 N -0.40 -5.08 12.10 31.19 0.38 -4.70 16 27 O 0.09 1.09 11.19 17.07 0.19 1.28 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.19 2.69 6.22 -52.49 -0.33 2.37 16 32 H 0.42 2.92 8.82 -40.82 -0.36 2.56 16 33 H 0.11 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.12 1.15 7.42 -51.93 -0.39 0.76 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.19 4.83 -51.93 -0.25 0.94 16 37 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 39 H 0.35 6.13 7.55 -39.29 -0.30 5.83 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.23 6.43 -51.93 -0.33 0.89 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -35.77 371.21 -6.41 -42.17 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.94 Total: 11.22 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.97 Total: 0.98 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.57 Total: -59.40 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.36 Total: -16.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.77 -6.41 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424064573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.143 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds