Wall clock time and date at job start Fri Apr 10 2020 18:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99830 * 2 1 4 4 H 1.48513 * 109.47052 * 239.99851 * 3 2 1 5 5 H 1.48492 * 109.47564 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47256 * 120.00483 * 3 2 1 7 7 C 1.37881 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99829 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46544 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99416 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00657 * 355.01435 * 11 10 9 13 13 N 1.34784 * 119.99583 * 175.00535 * 11 10 9 14 14 C 1.46965 * 120.59304 * 185.20963 * 13 11 10 15 15 C 1.53368 * 108.63595 * 235.25193 * 14 13 11 16 16 N 1.46957 * 108.63602 * 310.57790 * 15 14 13 17 17 C 1.34775 * 120.59466 * 235.20250 * 16 15 14 18 18 O 1.21348 * 119.99996 * 354.48522 * 17 16 15 19 19 C 1.49453 * 120.00087 * 174.48166 * 17 16 15 20 20 O 1.21350 * 119.99967 * 5.89025 * 19 17 16 21 21 N 1.34777 * 119.99888 * 185.89141 * 19 17 16 22 22 C 1.46504 * 119.99932 * 180.02562 * 21 19 17 23 23 C 1.53000 * 117.49861 * 223.74337 * 22 21 19 24 24 C 1.53003 * 117.49900 * 155.08269 * 22 21 19 25 25 C 1.46966 * 118.81175 * 55.47723 * 16 15 14 26 26 C 1.46966 * 120.59272 * 5.23853 * 13 11 10 27 27 H 0.96998 * 119.99588 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46980 * 60.00189 * 9 7 2 29 29 H 1.09000 * 109.46937 * 299.99964 * 9 7 2 30 30 H 0.96993 * 120.00589 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.60487 * 115.50905 * 14 13 11 32 32 H 1.08999 * 109.74911 * 355.08539 * 14 13 11 33 33 H 1.09002 * 109.60934 * 190.83028 * 15 14 13 34 34 H 1.09000 * 109.74865 * 70.40769 * 15 14 13 35 35 H 0.96998 * 120.00125 * 359.97438 * 21 19 17 36 36 H 1.09001 * 115.54846 * 9.41315 * 22 21 19 37 37 H 1.08994 * 117.49574 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49496 * 145.01928 * 23 22 21 39 39 H 1.09000 * 117.49587 * 214.97600 * 24 22 21 40 40 H 1.08993 * 117.49703 * 359.97438 * 24 22 21 41 41 H 1.09002 * 109.60852 * 64.26754 * 25 16 15 42 42 H 1.08999 * 109.61096 * 184.77464 * 25 16 15 43 43 H 1.08996 * 109.60913 * 244.48885 * 26 13 11 44 44 H 1.08994 * 109.60893 * 4.83461 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5621 -5.1069 0.0920 13 7 2.6254 -5.9064 -0.1016 14 6 2.1443 -7.2903 -0.2171 15 6 2.7823 -8.1256 0.8997 16 7 4.2307 -7.8773 0.9030 17 6 5.1023 -8.9003 0.8024 18 8 4.6983 -10.0445 0.8088 19 6 6.5665 -8.6255 0.6828 20 8 6.9809 -7.4894 0.7835 21 7 7.4267 -9.6396 0.4631 22 6 8.8620 -9.3703 0.3465 23 6 9.6248 -10.0783 -0.7751 24 6 9.8244 -10.5123 0.6792 25 6 4.7118 -6.4939 1.0241 26 6 4.0739 -5.6579 -0.0984 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 3.1567 -3.4355 -0.0002 31 1 2.4301 -7.6971 -1.1871 32 1 1.0592 -7.3126 -0.1164 33 1 2.5929 -9.1837 0.7188 34 1 2.3596 -7.8378 1.8623 35 1 7.0955 -10.5478 0.3830 36 1 9.1731 -8.3583 0.6057 37 1 9.0585 -10.7441 -1.4263 38 1 10.4379 -9.5322 -1.2534 39 1 10.7688 -10.2515 1.1570 40 1 9.3896 -11.4637 0.9854 41 1 4.4229 -6.0897 1.9943 42 1 5.7972 -6.4741 0.9254 43 1 4.4970 -5.9486 -1.0598 44 1 4.2630 -4.5994 0.0796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426441220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:26 Heat of formation + Delta-G solvation = -30.629408 kcal Electronic energy + Delta-G solvation = -27417.475174 eV Core-core repulsion = 23372.493479 eV Total energy + Delta-G solvation = -4044.981695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35971 -39.83955 -38.95384 -37.75346 -37.00570 -34.29729 -34.05073 -33.21223 -32.39199 -31.28704 -28.38386 -27.01528 -25.44052 -23.97838 -23.01678 -22.96328 -22.24327 -21.51209 -20.68227 -19.22789 -18.52747 -17.77546 -17.21342 -16.52807 -16.30641 -15.98135 -15.76535 -15.62824 -15.30644 -15.05227 -14.82633 -14.66123 -14.40278 -13.88439 -13.75727 -13.33807 -13.17747 -13.12673 -12.60330 -12.20382 -12.17961 -12.02175 -11.92391 -11.76416 -11.56276 -11.41140 -11.23208 -11.05770 -10.95415 -10.86659 -10.28166 -9.62119 -9.45342 -9.39296 -9.34091 -9.25152 -8.72367 -8.33714 -7.73828 -6.14451 -4.21179 0.99046 1.84846 2.75133 2.88066 3.26699 3.27763 3.31906 3.34494 3.34911 3.84649 3.85488 4.15824 4.31529 4.35170 4.41621 4.57295 4.75850 4.92441 5.02409 5.07713 5.07874 5.15535 5.21456 5.28278 5.33099 5.41390 5.50785 5.57388 5.69705 5.77351 5.86708 6.02229 6.13633 6.57660 6.67764 6.90387 7.09896 7.35431 7.49616 7.52477 7.57368 7.58873 7.84045 8.02098 8.74725 8.88224 9.29254 9.47111 10.95690 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002519 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.026493 B =11113.428793 C =12472.650946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.642 5.642 14 C 0.120 3.880 15 C 0.092 3.908 16 N -0.571 5.571 17 C 0.508 3.492 18 O -0.527 6.527 19 C 0.519 3.481 20 O -0.502 6.502 21 N -0.671 5.671 22 C 0.071 3.929 23 C -0.189 4.189 24 C -0.185 4.185 25 C 0.029 3.971 26 C 0.103 3.897 27 H 0.266 0.734 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.386 0.614 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.169 0.831 43 H 0.068 0.932 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.479 -21.643 0.450 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.399 3.601 12 O -0.476 6.476 13 N -0.382 5.382 14 C -0.004 4.004 15 C -0.030 4.030 16 N -0.304 5.304 17 C 0.290 3.710 18 O -0.404 6.404 19 C 0.301 3.699 20 O -0.379 6.379 21 N -0.321 5.321 22 C -0.034 4.034 23 C -0.227 4.227 24 C -0.223 4.223 25 C -0.092 4.092 26 C -0.022 4.022 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.221 0.779 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.252 0.748 36 H 0.162 0.838 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.185 0.815 43 H 0.087 0.913 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.433 -21.392 0.577 28.243 hybrid contribution 0.656 0.626 -0.032 0.907 sum 19.089 -20.766 0.545 28.211 Atomic orbital electron populations 1.69971 1.06082 1.27378 1.48815 1.24945 0.94922 0.99390 0.94754 0.86469 0.79397 0.82314 0.78674 1.20086 1.21094 1.20066 1.21174 0.93193 0.90423 1.53286 0.92033 1.18996 0.87788 0.81058 0.97626 1.45892 1.10879 1.04388 1.77042 1.16065 0.84765 0.81095 0.78178 1.90859 1.14350 1.83785 1.58589 1.47313 1.05362 1.05862 1.79649 1.21688 1.01343 0.80315 0.97099 1.22286 0.78280 1.01894 1.00580 1.47943 1.06526 1.07404 1.68515 1.19839 0.86852 0.85429 0.78911 1.90758 1.79204 1.20562 1.49837 1.20260 0.87586 0.85126 0.76927 1.90268 1.77830 1.20261 1.49571 1.45155 1.05834 1.10931 1.70210 1.21775 0.78241 0.99217 1.04179 1.23478 1.03230 1.03982 0.92011 1.23431 1.01132 0.99102 0.98649 1.23979 1.06744 0.79083 0.99431 1.22014 0.80793 1.00697 0.98677 0.92408 0.95794 0.95638 0.77933 0.91738 0.87330 0.87839 0.90093 0.74837 0.83797 0.88173 0.87512 0.87431 0.88139 0.90652 0.81523 0.91332 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.16 5.43 -5.19 -0.03 7.14 16 10 N -0.73 -15.79 5.46 -66.41 -0.36 -16.16 16 11 C 0.70 14.62 8.29 -86.91 -0.72 13.90 16 12 O -0.60 -14.87 15.77 5.29 0.08 -14.79 16 13 N -0.64 -10.09 2.95 -177.94 -0.52 -10.61 16 14 C 0.12 1.60 6.59 -3.60 -0.02 1.58 16 15 C 0.09 1.06 6.58 -3.60 -0.02 1.04 16 16 N -0.57 -6.54 2.94 -172.73 -0.51 -7.05 16 17 C 0.51 5.68 7.75 -11.58 -0.09 5.59 16 18 O -0.53 -6.64 15.92 5.50 0.09 -6.55 16 19 C 0.52 5.08 7.82 -11.58 -0.09 4.99 16 20 O -0.50 -5.55 12.58 5.50 0.07 -5.48 16 21 N -0.67 -4.89 5.56 -54.23 -0.30 -5.19 16 22 C 0.07 0.42 6.43 -67.93 -0.44 -0.01 16 23 C -0.19 -0.82 10.46 -26.69 -0.28 -1.10 16 24 C -0.19 -0.74 10.46 -26.69 -0.28 -1.02 16 25 C 0.03 0.33 6.48 -3.37 -0.02 0.31 16 26 C 0.10 1.28 6.58 -3.37 -0.02 1.26 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.39 7.21 5.79 -40.82 -0.24 6.98 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 1.59 7.00 -51.93 -0.36 1.23 16 33 H 0.10 1.10 7.02 -51.93 -0.36 0.74 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.41 2.57 8.31 -40.82 -0.34 2.23 16 36 H 0.14 0.95 7.40 -51.93 -0.38 0.56 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.17 1.83 3.67 -57.28 -0.21 1.62 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.16 5.61 -51.93 -0.29 0.87 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -34.24 365.05 -8.62 -42.87 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.95 Total: 6.78 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: -2.43 Total: 20.25 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.96 Total: -64.44 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.24 Total: -26.82 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.24 -8.62 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426441220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.238 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds