Wall clock time and date at job start Fri Apr 10 2020 18:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99830 * 2 1 4 4 H 1.48513 * 109.47052 * 239.99851 * 3 2 1 5 5 H 1.48492 * 109.47564 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47256 * 120.00483 * 3 2 1 7 7 C 1.37881 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99829 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46544 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99416 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00657 * 355.01435 * 11 10 9 13 13 N 1.34784 * 119.99583 * 175.00535 * 11 10 9 14 14 C 1.46965 * 120.59304 * 185.20963 * 13 11 10 15 15 C 1.53368 * 108.63595 * 235.25193 * 14 13 11 16 16 N 1.46957 * 108.63602 * 310.57790 * 15 14 13 17 17 C 1.34775 * 120.59466 * 235.20250 * 16 15 14 18 18 O 1.21348 * 119.99996 * 354.48522 * 17 16 15 19 19 C 1.49453 * 120.00087 * 174.48166 * 17 16 15 20 20 O 1.21350 * 119.99967 * 5.89025 * 19 17 16 21 21 N 1.34777 * 119.99888 * 185.89141 * 19 17 16 22 22 C 1.46504 * 119.99932 * 180.02562 * 21 19 17 23 23 C 1.53000 * 117.49861 * 223.74337 * 22 21 19 24 24 C 1.53003 * 117.49900 * 155.08269 * 22 21 19 25 25 C 1.46966 * 118.81175 * 55.47723 * 16 15 14 26 26 C 1.46966 * 120.59272 * 5.23853 * 13 11 10 27 27 H 0.96998 * 119.99588 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46980 * 60.00189 * 9 7 2 29 29 H 1.09000 * 109.46937 * 299.99964 * 9 7 2 30 30 H 0.96993 * 120.00589 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.60487 * 115.50905 * 14 13 11 32 32 H 1.08999 * 109.74911 * 355.08539 * 14 13 11 33 33 H 1.09002 * 109.60934 * 190.83028 * 15 14 13 34 34 H 1.09000 * 109.74865 * 70.40769 * 15 14 13 35 35 H 0.96998 * 120.00125 * 359.97438 * 21 19 17 36 36 H 1.09001 * 115.54846 * 9.41315 * 22 21 19 37 37 H 1.08994 * 117.49574 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49496 * 145.01928 * 23 22 21 39 39 H 1.09000 * 117.49587 * 214.97600 * 24 22 21 40 40 H 1.08993 * 117.49703 * 359.97438 * 24 22 21 41 41 H 1.09002 * 109.60852 * 64.26754 * 25 16 15 42 42 H 1.08999 * 109.61096 * 184.77464 * 25 16 15 43 43 H 1.08996 * 109.60913 * 244.48885 * 26 13 11 44 44 H 1.08994 * 109.60893 * 4.83461 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5621 -5.1069 0.0920 13 7 2.6254 -5.9064 -0.1016 14 6 2.1443 -7.2903 -0.2171 15 6 2.7823 -8.1256 0.8997 16 7 4.2307 -7.8773 0.9030 17 6 5.1023 -8.9003 0.8024 18 8 4.6983 -10.0445 0.8088 19 6 6.5665 -8.6255 0.6828 20 8 6.9809 -7.4894 0.7835 21 7 7.4267 -9.6396 0.4631 22 6 8.8620 -9.3703 0.3465 23 6 9.6248 -10.0783 -0.7751 24 6 9.8244 -10.5123 0.6792 25 6 4.7118 -6.4939 1.0241 26 6 4.0739 -5.6579 -0.0984 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8897 30 1 3.1567 -3.4355 -0.0002 31 1 2.4301 -7.6971 -1.1871 32 1 1.0592 -7.3126 -0.1164 33 1 2.5929 -9.1837 0.7188 34 1 2.3596 -7.8378 1.8623 35 1 7.0955 -10.5478 0.3830 36 1 9.1731 -8.3583 0.6057 37 1 9.0585 -10.7441 -1.4263 38 1 10.4379 -9.5322 -1.2534 39 1 10.7688 -10.2515 1.1570 40 1 9.3896 -11.4637 0.9854 41 1 4.4229 -6.0897 1.9943 42 1 5.7972 -6.4741 0.9254 43 1 4.4970 -5.9486 -1.0598 44 1 4.2630 -4.5994 0.0796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426441220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:25 Heat of formation + Delta-G solvation = -56.771941 kcal Electronic energy + Delta-G solvation = -27418.608799 eV Core-core repulsion = 23372.493479 eV Total energy + Delta-G solvation = -4046.115321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23799 -41.18160 -39.90101 -38.49497 -38.02276 -36.23312 -35.26960 -34.33588 -33.84629 -32.44748 -29.80115 -28.67246 -26.45551 -25.07489 -24.62987 -23.41887 -23.26786 -22.23616 -21.74167 -20.73811 -19.77882 -18.68138 -18.26669 -17.81833 -17.49128 -17.21061 -17.14642 -16.71462 -16.46623 -16.35584 -15.76743 -15.49974 -15.41914 -15.26205 -15.00832 -14.88699 -14.34741 -14.04825 -13.92710 -13.75219 -13.44862 -13.15451 -12.90986 -12.68012 -12.66584 -12.61804 -12.44563 -12.38638 -12.18692 -12.14437 -11.48879 -11.45544 -11.20270 -10.78377 -10.59543 -10.20979 -9.98216 -9.91221 -9.32516 -8.27034 -6.43564 0.17727 1.05973 1.44399 1.48986 1.56588 1.67930 1.94816 2.17124 2.31975 2.40814 2.95946 3.05991 3.07768 3.13749 3.74513 3.74975 3.79807 4.02169 4.04349 4.06801 4.12258 4.26853 4.38904 4.51477 4.60974 4.72366 4.79774 4.83015 4.95669 5.02202 5.05585 5.10259 5.22569 5.27705 5.38761 5.48080 5.52713 5.66637 5.82823 5.86259 6.03744 6.11791 6.56061 6.67231 6.81639 7.13221 7.26203 7.65095 8.84969 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002519 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.026493 B =11113.428793 C =12472.650946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.643 6.643 13 N -0.631 5.631 14 C 0.118 3.882 15 C 0.101 3.899 16 N -0.575 5.575 17 C 0.510 3.490 18 O -0.541 6.541 19 C 0.519 3.481 20 O -0.518 6.518 21 N -0.657 5.657 22 C 0.047 3.953 23 C -0.181 4.181 24 C -0.171 4.171 25 C 0.039 3.961 26 C 0.099 3.901 27 H 0.269 0.731 28 H -0.014 1.014 29 H -0.014 1.014 30 H 0.402 0.598 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.421 0.579 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.179 0.821 43 H 0.087 0.913 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.863 -22.212 0.221 31.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.396 3.604 12 O -0.526 6.526 13 N -0.369 5.369 14 C -0.005 4.005 15 C -0.022 4.022 16 N -0.307 5.307 17 C 0.293 3.707 18 O -0.418 6.418 19 C 0.301 3.699 20 O -0.397 6.397 21 N -0.307 5.307 22 C -0.057 4.057 23 C -0.219 4.219 24 C -0.209 4.209 25 C -0.082 4.082 26 C -0.024 4.024 27 H 0.077 0.923 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.240 0.760 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.095 0.905 35 H 0.258 0.742 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.194 0.806 43 H 0.105 0.895 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.915 -22.045 0.341 31.087 hybrid contribution -0.355 0.636 0.025 0.729 sum 21.560 -21.409 0.366 30.386 Atomic orbital electron populations 1.70140 1.08246 1.28608 1.49845 1.26063 0.95790 1.03844 0.93867 0.85199 0.77894 0.76548 0.79516 1.18616 1.21142 1.18642 1.21548 0.94262 0.90418 1.53044 0.89870 1.18422 0.88074 0.83286 0.93973 1.45488 1.10929 1.03830 1.77583 1.16209 0.84729 0.81632 0.77790 1.90824 1.16739 1.84544 1.60456 1.47308 1.06229 1.05505 1.77906 1.21849 1.00685 0.79112 0.98895 1.22151 0.78461 1.02048 0.99507 1.47976 1.06439 1.07619 1.68708 1.20090 0.87501 0.84989 0.78121 1.90751 1.79642 1.21070 1.50383 1.19962 0.87039 0.85422 0.77467 1.90240 1.77694 1.20827 1.50900 1.45139 1.06287 1.10630 1.68653 1.21922 0.77503 0.99781 1.06528 1.23547 1.02813 1.03417 0.92149 1.23522 1.00719 0.98335 0.98338 1.23946 1.07049 0.78682 0.98566 1.22275 0.78472 1.01372 1.00279 0.92254 0.99614 0.99635 0.75967 0.89841 0.88988 0.86599 0.90542 0.74151 0.84584 0.87861 0.86643 0.86290 0.87456 0.91043 0.80550 0.89495 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.55 -30.39 9.28 25.60 0.24 -30.15 16 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.29 16.02 5.43 85.63 0.47 16.48 16 10 N -0.72 -31.94 5.46 -482.28 -2.63 -34.57 16 11 C 0.69 29.81 8.29 179.05 1.49 31.29 16 12 O -0.64 -33.52 15.77 -3.98 -0.06 -33.59 16 13 N -0.63 -19.58 2.95 -835.15 -2.46 -22.04 16 14 C 0.12 3.09 6.59 86.41 0.57 3.66 16 15 C 0.10 2.23 6.58 86.42 0.57 2.80 16 16 N -0.58 -12.30 2.94 -818.75 -2.41 -14.70 16 17 C 0.51 10.57 7.75 87.27 0.68 11.24 16 18 O -0.54 -12.73 15.92 -3.24 -0.05 -12.78 16 19 C 0.52 9.27 7.82 87.27 0.68 9.96 16 20 O -0.52 -10.56 12.58 -3.25 -0.04 -10.60 16 21 N -0.66 -8.35 5.56 -443.85 -2.47 -10.82 16 22 C 0.05 0.47 6.43 44.99 0.29 0.76 16 23 C -0.18 -1.13 10.46 30.62 0.32 -0.81 16 24 C -0.17 -0.92 10.46 30.62 0.32 -0.60 16 25 C 0.04 0.82 6.48 86.56 0.56 1.38 16 26 C 0.10 2.32 6.58 86.56 0.57 2.89 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 28 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.40 14.82 5.79 -92.71 -0.54 14.29 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 2.76 7.00 -2.39 -0.02 2.74 16 33 H 0.12 2.31 7.02 -2.39 -0.02 2.30 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.42 4.37 8.31 -92.71 -0.77 3.60 16 36 H 0.14 1.59 7.40 -2.39 -0.02 1.57 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.18 3.54 3.67 -87.16 -0.32 3.22 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.23 5.61 -2.39 -0.01 2.21 16 Total: -1.00 -75.92 365.05 -1.16 -77.08 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.56 Total: 24.16 kcal Atomic # 6 Polarization: 42.38 SS G_CDS: 7.21 Total: 49.58 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -9.68 Total: -138.24 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -0.16 Total: -56.97 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -75.92 -1.16 -77.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426441220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.308 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds