Wall clock time and date at job start Fri Apr 10 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99822 * 2 1 4 4 H 1.48499 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47069 * 299.99860 * 3 2 1 6 6 H 1.48501 * 109.47184 * 59.99705 * 3 2 1 7 7 C 1.37883 * 120.00677 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99582 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.34969 * 125.97333 * 125.00330 * 10 9 7 12 12 C 1.35242 * 107.85682 * 179.97438 * 11 10 9 13 13 C 1.40400 * 107.86909 * 359.97438 * 12 11 10 14 14 N 1.40202 * 125.97096 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99923 * 0.02562 * 14 13 12 16 16 O 1.21586 * 120.00245 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99904 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00022 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47246 * 35.00523 * 18 17 15 20 20 C 1.52999 * 109.47306 * 275.00402 * 18 17 15 21 21 O 1.42899 * 109.46796 * 294.99839 * 20 18 17 22 22 C 1.53001 * 109.47109 * 155.00469 * 18 17 15 23 23 H 1.08995 * 110.35817 * 59.30804 * 22 18 17 24 24 C 1.54951 * 110.30685 * 297.16863 * 22 18 17 25 25 C 1.55312 * 100.94225 * 204.63870 * 24 22 18 26 26 C 1.54380 * 102.25056 * 34.13333 * 25 24 22 27 27 O 1.43245 * 107.59000 * 338.64209 * 26 25 24 28 28 N 1.31205 * 108.05754 * 0.26607 * 13 12 11 29 29 H 0.96994 * 120.00811 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46610 * 60.00078 * 9 7 2 31 31 H 1.08995 * 109.47154 * 299.99881 * 9 7 2 32 32 H 1.08004 * 126.07114 * 0.02562 * 11 10 9 33 33 H 1.08007 * 126.06192 * 179.97438 * 12 11 10 34 34 H 0.96991 * 119.99580 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99844 * 0.02562 * 17 15 14 36 36 H 1.08992 * 109.47140 * 54.99748 * 20 18 17 37 37 H 1.09000 * 109.47160 * 175.00293 * 20 18 17 38 38 H 0.96708 * 113.99819 * 180.02562 * 21 20 18 39 39 H 1.09000 * 111.12523 * 322.55899 * 24 22 18 40 40 H 1.08998 * 111.12948 * 86.72127 * 24 22 18 41 41 H 1.08999 * 110.84840 * 275.94257 * 25 24 22 42 42 H 1.08999 * 110.84966 * 152.32055 * 25 24 22 43 43 H 1.08996 * 109.83192 * 219.13077 * 26 25 24 44 44 H 1.09002 * 109.83458 * 98.15431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2423 -4.6223 0.8953 12 6 3.2606 -5.4428 0.5505 13 6 3.8682 -4.9153 -0.6001 14 7 4.9642 -5.4663 -1.2789 15 6 5.5289 -6.6062 -0.8336 16 8 5.0881 -7.1565 0.1570 17 7 6.5822 -7.1362 -1.4864 18 6 7.1963 -8.3749 -1.0021 19 1 6.4255 -9.0249 -0.5882 20 6 8.2223 -8.0449 0.0839 21 8 9.2931 -7.2898 -0.4863 22 6 7.8938 -9.0862 -2.1633 23 1 8.6602 -8.4435 -2.5963 24 6 6.8600 -9.4932 -3.2435 25 6 7.5947 -10.6816 -3.9217 26 6 8.3513 -11.3185 -2.7363 27 8 8.4739 -10.3215 -1.7151 28 7 3.2349 -3.8132 -0.9255 29 1 -0.4851 0.8399 -0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5568 0.8903 32 1 1.5777 -4.7525 1.7366 33 1 3.5543 -6.3439 1.0684 34 1 5.3161 -5.0271 -2.0688 35 1 6.9341 -6.6970 -2.2764 36 1 7.7441 -7.4606 0.8700 37 1 8.6146 -8.9699 0.5062 38 1 9.9824 -7.0452 0.1464 39 1 5.9240 -9.8178 -2.7890 40 1 6.6904 -8.6812 -3.9506 41 1 8.2916 -10.3250 -4.6802 42 1 6.8810 -11.3856 -4.3496 43 1 9.3412 -11.6404 -3.0595 44 1 7.7901 -12.1715 -2.3547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447970149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:43 Heat of formation + Delta-G solvation = -37.552549 kcal Electronic energy + Delta-G solvation = -27179.954866 eV Core-core repulsion = 23134.672961 eV Total energy + Delta-G solvation = -4045.281905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82726 -40.17699 -39.28864 -37.14585 -34.98873 -34.55455 -33.33341 -32.43875 -31.28635 -30.22786 -29.25019 -27.85246 -26.56870 -23.98242 -23.04170 -21.99667 -21.86334 -20.90147 -20.39138 -19.76964 -18.21001 -17.63523 -17.16988 -16.67260 -16.56076 -16.24640 -15.59513 -15.50446 -15.04766 -14.83470 -14.49341 -14.42979 -14.09300 -13.99711 -13.77566 -13.48722 -12.77479 -12.56014 -12.46186 -12.29242 -12.20000 -12.14733 -11.77990 -11.74619 -11.22196 -11.14327 -11.03299 -10.87357 -10.40820 -10.27377 -10.23615 -10.04510 -9.84349 -9.67442 -9.46515 -9.24196 -8.62667 -8.08314 -7.39660 -6.23235 -4.28023 2.27573 2.67504 3.10853 3.22950 3.30459 3.34265 3.38372 3.73834 3.85900 4.02686 4.13049 4.20759 4.28631 4.38248 4.49848 4.72329 4.83652 4.86182 5.11924 5.14846 5.26065 5.29584 5.34446 5.38141 5.46454 5.50899 5.60356 5.63665 5.79966 5.84412 6.20363 6.30469 6.55679 6.59585 6.64093 6.88831 7.02731 7.12537 7.41434 7.51384 7.71230 7.83884 7.99043 8.08572 8.59030 8.68408 8.82791 9.37562 10.85486 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.024135 B = 0.002243 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.868771 B =12477.593147 C =12738.730725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.642 5.642 15 C 0.717 3.283 16 O -0.568 6.568 17 N -0.731 5.731 18 C 0.174 3.826 19 H 0.108 0.892 20 C 0.065 3.935 21 O -0.571 6.571 22 C 0.082 3.918 23 H 0.086 0.914 24 C -0.153 4.153 25 C -0.156 4.156 26 C 0.051 3.949 27 O -0.373 6.373 28 N -0.307 5.307 29 H 0.266 0.734 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.407 0.593 35 H 0.399 0.601 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.379 0.621 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.597 -20.937 -5.461 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.292 5.292 15 C 0.416 3.584 16 O -0.444 6.444 17 N -0.387 5.387 18 C 0.068 3.932 19 H 0.126 0.874 20 C -0.014 4.014 21 O -0.376 6.376 22 C 0.024 3.976 23 H 0.104 0.896 24 C -0.190 4.190 25 C -0.194 4.194 26 C -0.025 4.025 27 O -0.292 6.292 28 N -0.138 5.138 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.242 0.758 35 H 0.233 0.767 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.225 0.775 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.609 -20.391 -5.708 26.307 hybrid contribution 0.960 0.844 0.086 1.282 sum 16.569 -19.547 -5.623 26.234 Atomic orbital electron populations 1.69920 1.06035 1.27497 1.49947 1.24951 0.94984 0.99560 0.94667 0.86279 0.80070 0.82494 0.77694 1.19572 1.20714 1.20783 1.21304 0.94034 0.89380 1.51777 0.91254 1.19734 0.85623 0.81336 0.99231 1.49055 1.23125 1.19764 1.18327 1.22557 1.00337 0.90309 0.96747 1.21506 1.02068 1.06483 1.01685 1.18777 0.90692 0.94001 0.94362 1.41347 1.31486 1.24974 1.31384 1.15541 0.79718 0.80220 0.82904 1.90866 1.64744 1.62304 1.26491 1.44765 1.33483 1.27466 1.33035 1.20835 0.94122 0.85005 0.93254 0.87426 1.22599 0.87990 0.95357 0.95445 1.86398 1.35255 1.75558 1.40397 1.23009 0.94567 0.87040 0.93031 0.89636 1.23346 0.99144 0.98502 0.98056 1.23125 0.99847 0.98097 0.98330 1.23137 1.00070 0.91553 0.87761 1.88391 1.80372 1.20169 1.40229 1.77326 1.03806 1.16112 1.16592 0.92401 0.93769 0.92545 0.81553 0.82192 0.75847 0.76734 0.92683 0.92166 0.77467 0.89920 0.89637 0.90436 0.89880 0.91329 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.71 9.23 -34.44 -0.32 -15.03 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.56 16 10 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.74 9.61 -39.84 -0.38 -6.12 16 13 C 0.28 5.58 8.11 -154.36 -1.25 4.33 16 14 N -0.64 -10.00 5.46 -15.51 -0.08 -10.09 16 15 C 0.72 10.45 8.50 -86.92 -0.74 9.71 16 16 O -0.57 -10.04 13.13 5.29 0.07 -9.98 16 17 N -0.73 -7.57 4.73 -58.68 -0.28 -7.85 16 18 C 0.17 1.73 2.14 -67.93 -0.15 1.59 16 19 H 0.11 1.22 7.58 -51.93 -0.39 0.82 16 20 C 0.07 0.65 6.66 37.16 0.25 0.90 16 21 O -0.57 -5.26 12.77 -35.23 -0.45 -5.71 16 22 C 0.08 0.68 2.79 -25.70 -0.07 0.61 16 23 H 0.09 0.74 7.63 -51.93 -0.40 0.34 16 24 C -0.15 -1.05 6.29 -24.48 -0.15 -1.21 16 25 C -0.16 -0.88 7.02 -24.78 -0.17 -1.05 16 26 C 0.05 0.34 7.79 37.88 0.30 0.64 16 27 O -0.37 -3.49 10.58 -35.23 -0.37 -3.86 16 28 N -0.31 -7.11 12.42 31.44 0.39 -6.72 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 33 H 0.16 3.14 5.91 -52.48 -0.31 2.83 16 34 H 0.41 5.16 8.84 -40.82 -0.36 4.80 16 35 H 0.40 3.22 8.62 -40.82 -0.35 2.87 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.56 7.91 -51.93 -0.41 0.15 16 38 H 0.38 2.11 9.12 45.56 0.42 2.53 16 39 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -34.14 371.09 -8.24 -42.38 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.57 Total: 8.89 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -3.02 Total: 3.34 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.53 Total: -57.07 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.75 Total: -19.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.14 -8.24 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447970149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.823 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds