Wall clock time and date at job start Fri Apr 10 2020 18:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99655 * 2 1 4 4 H 1.48497 * 109.47106 * 240.00011 * 3 2 1 5 5 H 1.48495 * 109.47466 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46705 * 120.00614 * 3 2 1 7 7 C 1.37874 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.53118 * 109.52341 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.27898 * 182.37800 * 10 9 7 12 12 N 1.46855 * 109.52457 * 59.17830 * 11 10 9 13 13 C 1.46892 * 111.00112 * 174.16120 * 12 11 10 14 14 C 1.53000 * 109.47253 * 176.15099 * 13 12 11 15 15 H 1.09003 * 109.46938 * 298.77655 * 14 13 12 16 16 O 1.42901 * 109.46851 * 58.77556 * 14 13 12 17 17 C 1.52995 * 109.47269 * 178.77456 * 14 13 12 18 18 N 1.46500 * 109.47145 * 175.00289 * 17 14 13 19 19 C 1.34943 * 126.04047 * 124.71946 * 18 17 14 20 20 C 1.35324 * 107.74915 * 179.83918 * 19 18 17 21 21 N 1.48017 * 126.03971 * 180.15905 * 20 19 18 22 22 O 1.21802 * 119.99797 * 180.33180 * 21 20 19 23 23 O 1.21795 * 120.00376 * 0.33262 * 21 20 19 24 24 C 1.39870 * 107.91299 * 0.41944 * 20 19 18 25 25 N 1.30831 * 108.20902 * 359.73759 * 24 20 19 26 26 C 1.46848 * 111.19590 * 298.25991 * 12 11 10 27 27 C 1.53039 * 109.52642 * 61.73801 * 26 12 11 28 28 H 0.97004 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.52148 * 300.13478 * 9 7 2 30 30 H 1.09001 * 109.50244 * 62.43467 * 10 9 7 31 31 H 1.09003 * 109.53144 * 302.33799 * 10 9 7 32 32 H 1.09000 * 109.46405 * 299.16109 * 11 10 9 33 33 H 1.08994 * 109.45440 * 179.18555 * 11 10 9 34 34 H 1.09003 * 109.47517 * 56.15002 * 13 12 11 35 35 H 1.09001 * 109.47400 * 296.15359 * 13 12 11 36 36 H 0.96701 * 114.00432 * 60.00269 * 16 14 13 37 37 H 1.08997 * 109.47239 * 295.00247 * 17 14 13 38 38 H 1.09000 * 109.47052 * 55.00238 * 17 14 13 39 39 H 1.07999 * 126.12982 * 359.97438 * 19 18 17 40 40 H 1.08002 * 125.89034 * 179.71866 * 24 20 19 41 41 H 1.08994 * 109.46456 * 181.75930 * 26 12 11 42 42 H 1.09009 * 109.46077 * 301.72655 * 26 12 11 43 43 H 1.08997 * 109.50444 * 180.88186 * 27 26 12 44 44 H 1.09007 * 109.49942 * 60.76255 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 -0.0605 12 7 0.6533 -5.0195 -1.2770 13 6 0.0070 -6.3286 -1.4388 14 6 -0.9134 -6.2955 -2.6606 15 1 -1.6885 -5.5438 -2.5112 16 8 -0.1500 -5.9680 -3.8233 17 6 -1.5632 -7.6680 -2.8470 18 7 -2.5337 -7.6041 -3.9426 19 6 -2.5507 -8.3957 -5.0353 20 6 -3.6021 -8.0204 -5.8002 21 7 -3.9988 -8.6246 -7.0919 22 8 -4.9663 -8.1941 -7.6939 23 8 -3.3580 -9.5521 -7.5529 24 6 -4.2439 -6.9569 -5.1574 25 7 -3.6044 -6.7065 -4.0438 26 6 -0.3404 -3.9383 -1.2772 27 6 0.3752 -2.5858 -1.2535 28 1 -0.4850 0.8401 0.0004 29 1 0.6226 -2.5569 0.8882 30 1 2.8429 -3.6320 0.9103 31 1 2.8996 -3.5843 -0.8685 32 1 0.8316 -5.0705 0.8151 33 1 2.1806 -5.8159 -0.0752 34 1 -0.5790 -6.5571 -0.5486 35 1 0.7690 -7.0953 -1.5787 36 1 0.5596 -6.5955 -4.0176 37 1 -0.7953 -8.4043 -3.0844 38 1 -2.0719 -7.9571 -1.9274 39 1 -1.8519 -9.1884 -5.2584 40 1 -5.1165 -6.4327 -5.5182 41 1 -0.9539 -4.0090 -2.1753 42 1 -0.9755 -4.0286 -0.3958 43 1 -0.3628 -1.7838 -1.2378 44 1 0.9999 -2.4890 -2.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541022041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:01 Heat of formation + Delta-G solvation = 28.857839 kcal Electronic energy + Delta-G solvation = -27349.985059 eV Core-core repulsion = 23307.582924 eV Total energy + Delta-G solvation = -4042.402135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.68635 -41.60882 -39.12250 -37.23429 -36.65400 -34.03429 -33.90754 -31.73032 -31.59342 -29.93543 -29.86093 -27.17116 -25.89258 -24.75626 -23.05867 -22.22139 -21.93850 -21.56829 -20.84356 -19.42261 -18.69690 -18.64963 -17.73787 -17.34063 -16.67936 -16.37999 -16.32549 -15.53804 -15.34638 -14.86317 -14.51657 -14.37893 -14.05438 -13.88328 -13.25468 -13.17825 -12.79239 -12.56443 -12.28161 -12.06538 -11.89224 -11.71214 -11.62539 -11.29565 -11.27909 -11.09308 -10.96725 -10.81700 -10.75307 -10.50115 -10.28786 -10.27289 -10.01844 -9.74128 -9.46966 -9.02471 -8.74492 -8.31929 -7.90959 -5.99656 -4.05182 0.01531 0.92930 1.08231 1.82344 1.96656 3.31175 3.36068 3.38564 3.46691 3.80502 3.85557 4.03339 4.22365 4.42866 4.44675 4.48193 4.59481 4.72233 4.74935 4.98206 5.30725 5.36718 5.39761 5.54898 5.68858 5.76348 5.85030 5.98014 6.09109 6.20026 6.20465 6.54077 6.55330 6.62388 6.77193 6.99272 7.07374 7.33569 7.40118 7.51660 7.51889 7.56490 7.77668 8.00639 8.11821 8.45026 8.98064 9.59391 11.06565 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.002334 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.323627 B =11996.198812 C =12778.709699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.523 5.523 13 C 0.025 3.975 14 C 0.094 3.906 15 H 0.121 0.879 16 O -0.534 6.534 17 C 0.092 3.908 18 N -0.333 5.333 19 C 0.155 3.845 20 C -0.196 4.196 21 N 0.072 4.928 22 O -0.166 6.166 23 O -0.179 6.179 24 C 0.113 3.887 25 N -0.257 5.257 26 C 0.053 3.947 27 C -0.102 4.102 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.371 0.629 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.203 0.797 40 H 0.210 0.790 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.092 0.908 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 -20.173 -6.043 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.248 5.248 13 C -0.104 4.104 14 C 0.034 3.966 15 H 0.138 0.862 16 O -0.338 6.338 17 C -0.029 4.029 18 N -0.111 5.111 19 C 0.000 4.000 20 C -0.294 4.294 21 N 0.587 4.413 22 O -0.380 6.380 23 O -0.390 6.390 24 C -0.076 4.076 25 N -0.077 5.077 26 C -0.074 4.074 27 C -0.140 4.140 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.220 0.780 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.110 0.890 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.710 -18.444 -4.645 19.594 hybrid contribution 0.143 -0.424 -0.236 0.506 sum -4.568 -18.868 -4.881 20.017 Atomic orbital electron populations 1.69861 1.05878 1.26480 1.50895 1.24970 0.94849 0.99039 0.95142 0.86687 0.79631 0.83279 0.78570 1.20280 1.21343 1.20379 1.21152 0.92830 0.90651 1.50382 0.92808 1.18683 0.92670 0.91769 0.93927 1.21676 0.98743 0.93604 1.00376 1.22146 0.95718 0.99524 0.89309 1.62000 1.23460 1.00915 1.38403 1.22671 0.96963 0.94648 0.96163 1.22403 0.94019 0.93801 0.86398 0.86164 1.86764 1.48526 1.54091 1.44391 1.22997 0.90036 1.01824 0.88045 1.48757 1.22263 1.23653 1.16384 1.22325 0.96334 0.95157 0.86154 1.21034 1.06733 1.08600 0.93058 1.42455 0.99263 0.99018 1.00532 1.94557 1.18068 1.65526 1.59816 1.94538 1.53709 1.20370 1.70369 1.24002 0.99543 0.93505 0.90598 1.77821 0.98602 1.12092 1.19158 1.22383 0.93190 0.93194 0.98612 1.21639 1.00195 0.92820 0.99395 0.93005 0.96264 0.93105 0.92406 0.95769 0.92491 0.94258 0.90651 0.78257 0.86974 0.87277 0.77993 0.77363 0.91988 0.96161 0.88965 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.37 55.43 0.63 -24.67 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 10 C -0.11 -2.13 5.32 -26.65 -0.14 -2.27 16 11 C 0.06 0.98 5.46 -3.83 -0.02 0.96 16 12 N -0.52 -8.19 4.61 -234.67 -1.08 -9.27 16 13 C 0.03 0.26 4.79 -3.83 -0.02 0.24 16 14 C 0.09 0.90 2.50 -26.73 -0.07 0.84 16 15 H 0.12 1.52 6.18 -51.93 -0.32 1.20 16 16 O -0.53 -6.02 13.13 -35.23 -0.46 -6.48 16 17 C 0.09 0.52 6.15 -4.04 -0.02 0.49 16 18 N -0.33 -2.68 3.63 -61.37 -0.22 -2.90 16 19 C 0.16 1.13 11.13 -17.22 -0.19 0.93 16 20 C -0.20 -1.91 7.11 -80.38 -0.57 -2.48 16 21 N 0.07 0.84 4.45 33.75 0.15 0.99 16 22 O -0.17 -2.11 19.05 -29.46 -0.56 -2.67 16 23 O -0.18 -2.18 19.02 -29.46 -0.56 -2.74 16 24 C 0.11 1.08 11.75 -17.37 -0.20 0.87 16 25 N -0.26 -2.73 12.34 30.62 0.38 -2.35 16 26 C 0.05 0.99 5.04 -3.83 -0.02 0.97 16 27 C -0.10 -2.38 5.12 -26.65 -0.14 -2.52 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.37 2.66 9.05 45.56 0.41 3.07 16 37 H 0.11 0.23 8.07 -51.93 -0.42 -0.19 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.20 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.06 1.12 5.87 -51.93 -0.30 0.81 16 42 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.09 2.42 6.18 -51.93 -0.32 2.10 16 44 H 0.04 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -33.21 367.76 -8.76 -41.96 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.57 Total: -0.02 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.98 Total: -13.62 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.14 Total: -38.20 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.58 Total: -11.89 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.21 -8.76 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.822 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds