Wall clock time and date at job start Fri Apr 10 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99655 * 2 1 4 4 H 1.48497 * 109.47106 * 240.00011 * 3 2 1 5 5 H 1.48495 * 109.47466 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46705 * 120.00614 * 3 2 1 7 7 C 1.37874 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.53118 * 109.52341 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.27898 * 182.37800 * 10 9 7 12 12 N 1.46855 * 109.52457 * 59.17830 * 11 10 9 13 13 C 1.46892 * 111.00112 * 174.16120 * 12 11 10 14 14 C 1.53000 * 109.47253 * 176.15099 * 13 12 11 15 15 H 1.09003 * 109.46938 * 298.77655 * 14 13 12 16 16 O 1.42901 * 109.46851 * 58.77556 * 14 13 12 17 17 C 1.52995 * 109.47269 * 178.77456 * 14 13 12 18 18 N 1.46500 * 109.47145 * 175.00289 * 17 14 13 19 19 C 1.34943 * 126.04047 * 124.71946 * 18 17 14 20 20 C 1.35324 * 107.74915 * 179.83918 * 19 18 17 21 21 N 1.48017 * 126.03971 * 180.15905 * 20 19 18 22 22 O 1.21802 * 119.99797 * 180.33180 * 21 20 19 23 23 O 1.21795 * 120.00376 * 0.33262 * 21 20 19 24 24 C 1.39870 * 107.91299 * 0.41944 * 20 19 18 25 25 N 1.30831 * 108.20902 * 359.73759 * 24 20 19 26 26 C 1.46848 * 111.19590 * 298.25991 * 12 11 10 27 27 C 1.53039 * 109.52642 * 61.73801 * 26 12 11 28 28 H 0.97004 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.52148 * 300.13478 * 9 7 2 30 30 H 1.09001 * 109.50244 * 62.43467 * 10 9 7 31 31 H 1.09003 * 109.53144 * 302.33799 * 10 9 7 32 32 H 1.09000 * 109.46405 * 299.16109 * 11 10 9 33 33 H 1.08994 * 109.45440 * 179.18555 * 11 10 9 34 34 H 1.09003 * 109.47517 * 56.15002 * 13 12 11 35 35 H 1.09001 * 109.47400 * 296.15359 * 13 12 11 36 36 H 0.96701 * 114.00432 * 60.00269 * 16 14 13 37 37 H 1.08997 * 109.47239 * 295.00247 * 17 14 13 38 38 H 1.09000 * 109.47052 * 55.00238 * 17 14 13 39 39 H 1.07999 * 126.12982 * 359.97438 * 19 18 17 40 40 H 1.08002 * 125.89034 * 179.71866 * 24 20 19 41 41 H 1.08994 * 109.46456 * 181.75930 * 26 12 11 42 42 H 1.09009 * 109.46077 * 301.72655 * 26 12 11 43 43 H 1.08997 * 109.50444 * 180.88186 * 27 26 12 44 44 H 1.09007 * 109.49942 * 60.76255 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 -0.0605 12 7 0.6533 -5.0195 -1.2770 13 6 0.0070 -6.3286 -1.4388 14 6 -0.9134 -6.2955 -2.6606 15 1 -1.6885 -5.5438 -2.5112 16 8 -0.1500 -5.9680 -3.8233 17 6 -1.5632 -7.6680 -2.8470 18 7 -2.5337 -7.6041 -3.9426 19 6 -2.5507 -8.3957 -5.0353 20 6 -3.6021 -8.0204 -5.8002 21 7 -3.9988 -8.6246 -7.0919 22 8 -4.9663 -8.1941 -7.6939 23 8 -3.3580 -9.5521 -7.5529 24 6 -4.2439 -6.9569 -5.1574 25 7 -3.6044 -6.7065 -4.0438 26 6 -0.3404 -3.9383 -1.2772 27 6 0.3752 -2.5858 -1.2535 28 1 -0.4850 0.8401 0.0004 29 1 0.6226 -2.5569 0.8882 30 1 2.8429 -3.6320 0.9103 31 1 2.8996 -3.5843 -0.8685 32 1 0.8316 -5.0705 0.8151 33 1 2.1806 -5.8159 -0.0752 34 1 -0.5790 -6.5571 -0.5486 35 1 0.7690 -7.0953 -1.5787 36 1 0.5596 -6.5955 -4.0176 37 1 -0.7953 -8.4043 -3.0844 38 1 -2.0719 -7.9571 -1.9274 39 1 -1.8519 -9.1884 -5.2584 40 1 -5.1165 -6.4327 -5.5182 41 1 -0.9539 -4.0090 -2.1753 42 1 -0.9755 -4.0286 -0.3958 43 1 -0.3628 -1.7838 -1.2378 44 1 0.9999 -2.4890 -2.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541022041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:00 Heat of formation + Delta-G solvation = 4.326805 kcal Electronic energy + Delta-G solvation = -27351.048804 eV Core-core repulsion = 23307.582924 eV Total energy + Delta-G solvation = -4043.465880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.41420 -42.36741 -40.25893 -38.34607 -37.52912 -35.59282 -34.67179 -33.33847 -32.33746 -31.51015 -30.85508 -28.36361 -27.04865 -25.91349 -24.37065 -23.59274 -22.68308 -22.51002 -21.89498 -20.38362 -20.12803 -19.49533 -18.56289 -18.49294 -18.01600 -17.32938 -17.01887 -16.77049 -16.30012 -16.20974 -15.67341 -15.46983 -15.13002 -14.76044 -14.53673 -14.46138 -14.26772 -13.86262 -13.53084 -13.10923 -12.93821 -12.83555 -12.79880 -12.58606 -12.56491 -12.36695 -12.21944 -12.19810 -12.04173 -11.89974 -11.87024 -11.45276 -11.31965 -10.96543 -10.81853 -10.63742 -10.42147 -10.38003 -9.15353 -8.10336 -6.23816 -0.79032 0.24439 0.41941 1.21327 1.23973 1.38902 1.40359 1.47774 2.41429 2.78268 3.06798 3.16608 3.32946 3.44096 3.57464 3.71791 3.82543 3.98639 4.05794 4.21942 4.26372 4.30988 4.36069 4.43421 4.52779 4.68704 4.72501 4.77543 4.87151 4.94830 4.99397 5.11477 5.21815 5.26665 5.32407 5.42511 5.55687 5.60586 5.96677 5.98295 6.00239 6.25760 6.33196 6.38719 6.61079 6.88338 6.89127 7.44157 8.93837 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.021396 B = 0.002334 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.323627 B =11996.198812 C =12778.709699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.101 4.101 11 C 0.067 3.933 12 N -0.532 5.532 13 C 0.026 3.974 14 C 0.099 3.901 15 H 0.081 0.919 16 O -0.562 6.562 17 C 0.094 3.906 18 N -0.331 5.331 19 C 0.181 3.819 20 C -0.219 4.219 21 N 0.076 4.924 22 O -0.207 6.207 23 O -0.179 6.179 24 C 0.109 3.891 25 N -0.294 5.294 26 C 0.072 3.928 27 C -0.094 4.094 28 H 0.259 0.741 29 H -0.013 1.013 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.389 0.611 37 H 0.164 0.836 38 H 0.126 0.874 39 H 0.247 0.753 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.011 0.989 43 H 0.054 0.946 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 -22.999 -5.740 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.060 4.060 12 N -0.257 5.257 13 C -0.102 4.102 14 C 0.039 3.961 15 H 0.099 0.901 16 O -0.369 6.369 17 C -0.025 4.025 18 N -0.108 5.108 19 C 0.025 3.975 20 C -0.318 4.318 21 N 0.586 4.414 22 O -0.412 6.412 23 O -0.392 6.392 24 C -0.080 4.080 25 N -0.113 5.113 26 C -0.056 4.056 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.005 0.995 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.135 0.865 36 H 0.239 0.761 37 H 0.182 0.818 38 H 0.144 0.856 39 H 0.263 0.737 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.972 -21.264 -4.360 21.909 hybrid contribution -0.325 0.441 -0.272 0.611 sum -3.296 -20.823 -4.632 21.585 Atomic orbital electron populations 1.70017 1.07191 1.27066 1.51580 1.25765 0.95681 1.02441 0.94935 0.85706 0.78461 0.79232 0.78846 1.19780 1.21067 1.19470 1.21590 0.93022 0.92358 1.50235 0.93033 1.18662 0.93211 0.92849 0.92747 1.21542 0.97936 0.94252 1.00175 1.22066 0.96123 0.98282 0.89547 1.61885 1.23109 1.02620 1.38059 1.22836 0.98265 0.92213 0.96932 1.22175 0.92993 0.95200 0.85755 0.90073 1.86731 1.49603 1.55682 1.44910 1.23204 0.90633 1.00260 0.88391 1.48957 1.21764 1.23024 1.17016 1.22969 0.95377 0.94734 0.84464 1.21202 1.08382 1.09523 0.92654 1.42670 0.98898 0.98784 1.01066 1.94558 1.19201 1.66437 1.61025 1.94503 1.53400 1.20491 1.70803 1.24266 0.99813 0.93516 0.90409 1.77798 1.00060 1.13709 1.19764 1.21993 0.93153 0.92098 0.98371 1.21377 0.99002 0.94870 0.97965 0.93168 0.99522 0.92772 0.93154 0.95970 0.88414 0.93050 0.86535 0.76128 0.81834 0.85581 0.73734 0.76488 0.91644 0.97090 0.92773 0.95677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 11.37 21.45 0.24 -53.91 16 2 C 0.01 0.57 5.31 84.65 0.45 1.02 16 3 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -29.87 8.56 25.60 0.22 -29.65 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.04 2.20 2.16 -11.46 -0.02 2.18 16 10 C -0.10 -4.01 5.32 30.64 0.16 -3.85 16 11 C 0.07 2.01 5.46 86.32 0.47 2.48 16 12 N -0.53 -15.47 4.61 -896.36 -4.13 -19.60 16 13 C 0.03 0.43 4.79 86.30 0.41 0.84 16 14 C 0.10 1.60 2.50 30.59 0.08 1.68 16 15 H 0.08 1.98 6.18 -2.39 -0.01 1.96 16 16 O -0.56 -11.09 13.13 -148.98 -1.96 -13.05 16 17 C 0.09 0.62 6.15 86.38 0.53 1.15 16 18 N -0.33 -4.26 3.63 -348.07 -1.26 -5.52 16 19 C 0.18 1.96 11.13 83.54 0.93 2.89 16 20 C -0.22 -3.94 7.11 36.10 0.26 -3.68 16 21 N 0.08 1.73 4.45 -47.13 -0.21 1.52 16 22 O -0.21 -5.42 19.05 18.88 0.36 -5.06 16 23 O -0.18 -4.10 19.02 18.89 0.36 -3.74 16 24 C 0.11 2.04 11.75 85.24 1.00 3.04 16 25 N -0.29 -5.93 12.34 -57.03 -0.70 -6.63 16 26 C 0.07 2.69 5.04 86.33 0.43 3.13 16 27 C -0.09 -4.55 5.12 30.65 0.16 -4.40 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 2.20 8.12 -2.39 -0.02 2.18 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.39 3.94 9.05 -74.06 -0.67 3.27 16 37 H 0.16 -0.55 8.07 -2.39 -0.02 -0.57 16 38 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.25 0.33 8.06 -2.91 -0.02 0.31 16 40 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.07 2.41 5.87 -2.39 -0.01 2.40 16 42 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.05 3.01 6.18 -2.39 -0.01 3.00 16 44 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -78.09 367.76 0.16 -77.93 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 0.35 Total: 4.89 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 5.08 Total: -23.16 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -6.06 Total: -84.14 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.24 Total: -21.85 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -78.09 0.16 -77.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.254 kcal (2) G-P(sol) polarization free energy of solvation -78.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds