Wall clock time and date at job start Fri Apr 10 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46828 * 269.99560 * 3 2 1 5 5 H 1.48496 * 109.47462 * 29.99656 * 3 2 1 6 6 H 1.48502 * 109.46753 * 149.99967 * 3 2 1 7 7 C 1.37870 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52341 * 179.97438 * 9 7 2 11 11 C 1.53034 * 109.28042 * 182.37687 * 10 9 7 12 12 N 1.46853 * 109.52169 * 59.17725 * 11 10 9 13 13 C 1.46898 * 110.99927 * 174.15971 * 12 11 10 14 14 C 1.52999 * 109.47481 * 293.88473 * 13 12 11 15 15 H 1.08993 * 109.47263 * 60.65908 * 14 13 12 16 16 O 1.42907 * 109.46670 * 300.66250 * 14 13 12 17 17 C 1.52996 * 109.47252 * 180.66559 * 14 13 12 18 18 N 1.46507 * 109.46973 * 184.99935 * 17 14 13 19 19 C 1.34950 * 126.03713 * 124.71831 * 18 17 14 20 20 C 1.35315 * 107.74379 * 179.83839 * 19 18 17 21 21 N 1.48016 * 126.03715 * 180.16184 * 20 19 18 22 22 O 1.21809 * 119.99973 * 180.27882 * 21 20 19 23 23 O 1.21802 * 120.00166 * 0.27734 * 21 20 19 24 24 C 1.39867 * 107.92181 * 0.41670 * 20 19 18 25 25 N 1.30846 * 108.20408 * 359.74296 * 24 20 19 26 26 C 1.46842 * 111.19893 * 298.26275 * 12 11 10 27 27 C 1.53033 * 109.52799 * 61.73907 * 26 12 11 28 28 H 0.96999 * 119.99746 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.51991 * 300.12744 * 9 7 2 30 30 H 1.08999 * 109.49992 * 62.43724 * 10 9 7 31 31 H 1.09001 * 109.53789 * 302.34165 * 10 9 7 32 32 H 1.09000 * 109.46362 * 299.16935 * 11 10 9 33 33 H 1.09000 * 109.45725 * 179.19069 * 11 10 9 34 34 H 1.09000 * 109.47375 * 173.88146 * 13 12 11 35 35 H 1.09002 * 109.46810 * 53.88370 * 13 12 11 36 36 H 0.96701 * 113.99994 * 299.99813 * 16 14 13 37 37 H 1.09000 * 109.47387 * 64.99777 * 17 14 13 38 38 H 1.08998 * 109.47268 * 304.99487 * 17 14 13 39 39 H 1.07996 * 126.12579 * 359.97438 * 19 18 17 40 40 H 1.08000 * 125.90004 * 179.71469 * 24 20 19 41 41 H 1.08999 * 109.46194 * 181.75830 * 26 12 11 42 42 H 1.09006 * 109.46164 * 301.71930 * 26 12 11 43 43 H 1.08998 * 109.50528 * 180.87793 * 27 26 12 44 44 H 1.09000 * 109.53619 * 60.77994 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 -0.0594 12 7 0.6532 -5.0195 -1.2759 13 6 0.0068 -6.3287 -1.4377 14 6 1.0732 -7.3962 -1.6905 15 1 1.7524 -7.4401 -0.8392 16 8 1.8087 -7.0648 -2.8701 17 6 0.3988 -8.7570 -1.8756 18 7 1.4233 -9.7971 -1.9985 19 6 1.5236 -10.9067 -1.2370 20 6 2.5970 -11.6080 -1.6695 21 7 3.0753 -12.8958 -1.1184 22 8 4.0619 -13.4316 -1.5910 23 8 2.4825 -13.4198 -0.1924 24 6 3.1780 -10.8982 -2.7253 25 7 2.4753 -9.8123 -2.9235 26 6 -0.3405 -3.9383 -1.2761 27 6 0.3752 -2.5858 -1.2525 28 1 -0.4850 0.8401 -0.0004 29 1 0.6219 -2.5565 0.8889 30 1 2.8427 -3.6321 0.9114 31 1 2.8995 -3.5845 -0.8674 32 1 0.8314 -5.0705 0.8162 33 1 2.1804 -5.8160 -0.0740 34 1 -0.6794 -6.2930 -2.2839 35 1 -0.5464 -6.5752 -0.5315 36 1 1.2665 -7.0083 -3.6688 37 1 -0.2119 -8.7401 -2.7782 38 1 -0.2330 -8.9697 -1.0133 39 1 0.8640 -11.1860 -0.4288 40 1 4.0554 -11.1948 -3.2808 41 1 -0.9539 -4.0090 -2.1743 42 1 -0.9756 -4.0286 -0.3948 43 1 -0.3628 -1.7838 -1.2369 44 1 0.9997 -2.4884 -2.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541022043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:03 Heat of formation + Delta-G solvation = 28.374458 kcal Electronic energy + Delta-G solvation = -27207.897567 eV Core-core repulsion = 23165.474471 eV Total energy + Delta-G solvation = -4042.423096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.70308 -41.62445 -39.02751 -37.21621 -36.67979 -34.01856 -33.91052 -31.63998 -31.61748 -30.22299 -29.62369 -27.20263 -25.92292 -24.72646 -23.00034 -22.15520 -21.94777 -21.54491 -21.03586 -19.45103 -18.70995 -18.66576 -17.76259 -17.25549 -16.67163 -16.51487 -16.21156 -15.55540 -15.24302 -14.85927 -14.55736 -14.31660 -14.14139 -13.86126 -13.36412 -13.04559 -12.77167 -12.46637 -12.41208 -12.12038 -11.81138 -11.72806 -11.46744 -11.33139 -11.32233 -11.17699 -10.99272 -10.90326 -10.65092 -10.51847 -10.29819 -10.22486 -10.05205 -9.75440 -9.50984 -9.02041 -8.78741 -8.34493 -7.91539 -6.02293 -4.07268 -0.02226 0.91125 1.06668 1.81555 1.94657 3.28482 3.35205 3.38807 3.43178 3.80979 3.92388 4.02310 4.22150 4.37393 4.41625 4.52004 4.63250 4.71715 4.75451 4.93541 5.28111 5.36840 5.38960 5.54105 5.63651 5.74322 5.82737 5.94027 6.04943 6.17131 6.21269 6.46775 6.53743 6.63945 6.77655 6.99406 7.05437 7.31416 7.48146 7.48655 7.49697 7.58964 7.75170 7.98132 8.08579 8.43229 8.96280 9.57446 11.04028 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002113 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.553471 B =13245.182910 C =13533.872577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.522 5.522 13 C 0.024 3.976 14 C 0.103 3.897 15 H 0.104 0.896 16 O -0.522 6.522 17 C 0.090 3.910 18 N -0.338 5.338 19 C 0.147 3.853 20 C -0.195 4.195 21 N 0.071 4.929 22 O -0.165 6.165 23 O -0.179 6.179 24 C 0.103 3.897 25 N -0.234 5.234 26 C 0.059 3.941 27 C -0.104 4.104 28 H 0.259 0.741 29 H 0.019 0.981 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.203 0.797 40 H 0.209 0.791 41 H 0.055 0.945 42 H 0.022 0.978 43 H 0.093 0.907 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -21.191 -4.587 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.247 5.247 13 C -0.106 4.106 14 C 0.041 3.959 15 H 0.122 0.878 16 O -0.325 6.325 17 C -0.031 4.031 18 N -0.116 5.116 19 C -0.007 4.007 20 C -0.293 4.293 21 N 0.586 4.414 22 O -0.380 6.380 23 O -0.390 6.390 24 C -0.087 4.087 25 N -0.053 5.053 26 C -0.068 4.068 27 C -0.143 4.143 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.218 0.782 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.220 0.780 40 H 0.225 0.775 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.111 0.889 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.691 -19.156 -5.504 20.112 hybrid contribution -0.509 -0.325 1.048 1.209 sum -3.200 -19.480 -4.456 20.238 Atomic orbital electron populations 1.69869 1.05875 1.26338 1.51194 1.24967 0.94862 0.99058 0.95161 0.86620 0.79891 0.83541 0.78106 1.20690 1.21320 1.19972 1.21205 0.92925 0.90622 1.50031 0.92730 1.18681 0.92671 0.91828 0.93855 1.21662 0.98742 0.93497 1.00445 1.22173 0.95763 0.99647 0.89215 1.61892 1.23297 1.00769 1.38697 1.22684 0.95332 0.91497 1.01085 1.22193 0.94282 0.88453 0.90950 0.87845 1.86758 1.36837 1.92198 1.16724 1.23036 0.87470 0.87076 1.05525 1.48865 1.22390 1.16340 1.23978 1.22393 0.96270 0.86512 0.95558 1.21069 1.05898 0.93470 1.08870 1.42480 0.99357 1.00529 0.98986 1.94556 1.15891 1.64582 1.62923 1.94545 1.58137 1.65868 1.20432 1.24092 0.99953 0.90079 0.94592 1.78046 0.97887 1.18250 1.11138 1.22300 0.92872 0.93083 0.98567 1.21668 1.00254 0.92757 0.99575 0.93099 0.96246 0.93224 0.92290 0.95940 0.92545 0.90429 0.94379 0.78156 0.87705 0.86633 0.77999 0.77474 0.92638 0.95949 0.88855 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 11.37 55.43 0.63 -24.30 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.80 8.56 -34.44 -0.29 -14.09 16 8 H 0.05 1.48 7.75 -52.48 -0.41 1.07 16 9 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 10 C -0.11 -2.16 5.32 -26.65 -0.14 -2.31 16 11 C 0.06 0.99 5.29 -3.83 -0.02 0.97 16 12 N -0.52 -8.08 4.51 -234.67 -1.06 -9.14 16 13 C 0.02 0.24 4.63 -3.83 -0.02 0.22 16 14 C 0.10 0.91 3.05 -26.73 -0.08 0.83 16 15 H 0.10 1.11 6.47 -51.93 -0.34 0.77 16 16 O -0.52 -5.88 12.23 -35.23 -0.43 -6.31 16 17 C 0.09 0.47 6.18 -4.04 -0.02 0.44 16 18 N -0.34 -2.53 3.68 -61.36 -0.23 -2.75 16 19 C 0.15 1.02 11.13 -17.22 -0.19 0.83 16 20 C -0.19 -1.81 7.11 -80.38 -0.57 -2.38 16 21 N 0.07 0.81 4.45 33.75 0.15 0.96 16 22 O -0.17 -2.04 19.05 -29.46 -0.56 -2.60 16 23 O -0.18 -2.15 19.02 -29.46 -0.56 -2.71 16 24 C 0.10 0.91 11.75 -17.36 -0.20 0.71 16 25 N -0.23 -2.29 11.56 30.63 0.35 -1.93 16 26 C 0.06 1.04 5.46 -3.84 -0.02 1.02 16 27 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.85 6.24 -51.93 -0.32 0.53 16 34 H 0.08 0.67 7.98 -51.93 -0.41 0.25 16 35 H 0.04 0.36 8.12 -51.93 -0.42 -0.07 16 36 H 0.37 3.08 9.05 45.56 0.41 3.49 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 0.27 8.07 -51.93 -0.42 -0.15 16 39 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 44 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -32.55 367.07 -8.78 -41.33 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.59 Total: -0.41 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.00 Total: -13.73 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.15 Total: -37.16 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.55 Total: -11.62 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.55 -8.78 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.704 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds