Wall clock time and date at job start Fri Apr 10 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46828 * 269.99560 * 3 2 1 5 5 H 1.48496 * 109.47462 * 29.99656 * 3 2 1 6 6 H 1.48502 * 109.46753 * 149.99967 * 3 2 1 7 7 C 1.37870 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52341 * 179.97438 * 9 7 2 11 11 C 1.53034 * 109.28042 * 182.37687 * 10 9 7 12 12 N 1.46853 * 109.52169 * 59.17725 * 11 10 9 13 13 C 1.46898 * 110.99927 * 174.15971 * 12 11 10 14 14 C 1.52999 * 109.47481 * 293.88473 * 13 12 11 15 15 H 1.08993 * 109.47263 * 60.65908 * 14 13 12 16 16 O 1.42907 * 109.46670 * 300.66250 * 14 13 12 17 17 C 1.52996 * 109.47252 * 180.66559 * 14 13 12 18 18 N 1.46507 * 109.46973 * 184.99935 * 17 14 13 19 19 C 1.34950 * 126.03713 * 124.71831 * 18 17 14 20 20 C 1.35315 * 107.74379 * 179.83839 * 19 18 17 21 21 N 1.48016 * 126.03715 * 180.16184 * 20 19 18 22 22 O 1.21809 * 119.99973 * 180.27882 * 21 20 19 23 23 O 1.21802 * 120.00166 * 0.27734 * 21 20 19 24 24 C 1.39867 * 107.92181 * 0.41670 * 20 19 18 25 25 N 1.30846 * 108.20408 * 359.74296 * 24 20 19 26 26 C 1.46842 * 111.19893 * 298.26275 * 12 11 10 27 27 C 1.53033 * 109.52799 * 61.73907 * 26 12 11 28 28 H 0.96999 * 119.99746 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.51991 * 300.12744 * 9 7 2 30 30 H 1.08999 * 109.49992 * 62.43724 * 10 9 7 31 31 H 1.09001 * 109.53789 * 302.34165 * 10 9 7 32 32 H 1.09000 * 109.46362 * 299.16935 * 11 10 9 33 33 H 1.09000 * 109.45725 * 179.19069 * 11 10 9 34 34 H 1.09000 * 109.47375 * 173.88146 * 13 12 11 35 35 H 1.09002 * 109.46810 * 53.88370 * 13 12 11 36 36 H 0.96701 * 113.99994 * 299.99813 * 16 14 13 37 37 H 1.09000 * 109.47387 * 64.99777 * 17 14 13 38 38 H 1.08998 * 109.47268 * 304.99487 * 17 14 13 39 39 H 1.07996 * 126.12579 * 359.97438 * 19 18 17 40 40 H 1.08000 * 125.90004 * 179.71469 * 24 20 19 41 41 H 1.08999 * 109.46194 * 181.75830 * 26 12 11 42 42 H 1.09006 * 109.46164 * 301.71930 * 26 12 11 43 43 H 1.08998 * 109.50528 * 180.87793 * 27 26 12 44 44 H 1.09000 * 109.53619 * 60.77994 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 -0.0594 12 7 0.6532 -5.0195 -1.2759 13 6 0.0068 -6.3287 -1.4377 14 6 1.0732 -7.3962 -1.6905 15 1 1.7524 -7.4401 -0.8392 16 8 1.8087 -7.0648 -2.8701 17 6 0.3988 -8.7570 -1.8756 18 7 1.4233 -9.7971 -1.9985 19 6 1.5236 -10.9067 -1.2370 20 6 2.5970 -11.6080 -1.6695 21 7 3.0753 -12.8958 -1.1184 22 8 4.0619 -13.4316 -1.5910 23 8 2.4825 -13.4198 -0.1924 24 6 3.1780 -10.8982 -2.7253 25 7 2.4753 -9.8123 -2.9235 26 6 -0.3405 -3.9383 -1.2761 27 6 0.3752 -2.5858 -1.2525 28 1 -0.4850 0.8401 -0.0004 29 1 0.6219 -2.5565 0.8889 30 1 2.8427 -3.6321 0.9114 31 1 2.8995 -3.5845 -0.8674 32 1 0.8314 -5.0705 0.8162 33 1 2.1804 -5.8160 -0.0740 34 1 -0.6794 -6.2930 -2.2839 35 1 -0.5464 -6.5752 -0.5315 36 1 1.2665 -7.0083 -3.6688 37 1 -0.2119 -8.7401 -2.7782 38 1 -0.2330 -8.9697 -1.0133 39 1 0.8640 -11.1860 -0.4288 40 1 4.0554 -11.1948 -3.2808 41 1 -0.9539 -4.0090 -2.1743 42 1 -0.9756 -4.0286 -0.3948 43 1 -0.3628 -1.7838 -1.2369 44 1 0.9997 -2.4884 -2.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541022043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:03 Heat of formation + Delta-G solvation = 5.143162 kcal Electronic energy + Delta-G solvation = -27208.904951 eV Core-core repulsion = 23165.474471 eV Total energy + Delta-G solvation = -4043.430480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.39158 -42.34036 -40.16596 -38.27720 -37.52275 -35.57622 -34.62614 -33.29619 -32.27824 -31.59740 -30.72063 -28.35918 -27.07230 -25.86531 -24.27808 -23.48243 -22.66016 -22.47438 -22.00415 -20.38198 -20.11913 -19.47941 -18.55107 -18.47813 -17.95343 -17.26903 -16.96453 -16.69729 -16.38940 -16.12909 -15.49681 -15.43571 -15.14499 -14.87412 -14.44913 -14.43232 -14.14633 -13.93893 -13.48057 -13.06092 -12.90266 -12.84771 -12.78207 -12.62836 -12.55077 -12.26139 -12.21761 -12.16243 -12.02159 -11.91170 -11.86126 -11.41419 -11.28217 -10.89402 -10.76831 -10.67801 -10.44237 -10.35242 -9.11966 -8.10554 -6.23174 -0.79924 0.26019 0.44629 1.24410 1.26630 1.38653 1.39853 1.49472 2.41738 2.76328 3.12129 3.16501 3.38281 3.52611 3.57302 3.69155 3.94286 3.98855 4.09586 4.21623 4.24106 4.31798 4.38588 4.41692 4.56624 4.68042 4.74133 4.77618 4.89375 4.90671 4.99175 5.09636 5.20455 5.28610 5.32810 5.42509 5.54796 5.61477 5.99378 6.01635 6.03101 6.28979 6.33387 6.40109 6.60864 6.87754 6.95368 7.44382 8.93746 Molecular weight = 324.16amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.002113 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.553471 B =13245.182910 C =13533.872577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.100 4.100 11 C 0.070 3.930 12 N -0.535 5.535 13 C 0.025 3.975 14 C 0.108 3.892 15 H 0.085 0.915 16 O -0.550 6.550 17 C 0.092 3.908 18 N -0.334 5.334 19 C 0.169 3.831 20 C -0.217 4.217 21 N 0.075 4.925 22 O -0.202 6.202 23 O -0.186 6.186 24 C 0.100 3.900 25 N -0.263 5.263 26 C 0.072 3.928 27 C -0.097 4.097 28 H 0.260 0.740 29 H -0.010 1.010 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.383 0.617 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.241 0.759 40 H 0.219 0.781 41 H 0.079 0.921 42 H 0.019 0.981 43 H 0.061 0.939 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -22.358 -4.714 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.138 4.138 11 C -0.058 4.058 12 N -0.259 5.259 13 C -0.104 4.104 14 C 0.047 3.953 15 H 0.103 0.897 16 O -0.356 6.356 17 C -0.027 4.027 18 N -0.112 5.112 19 C 0.014 3.986 20 C -0.315 4.315 21 N 0.585 4.415 22 O -0.409 6.409 23 O -0.397 6.397 24 C -0.090 4.090 25 N -0.082 5.082 26 C -0.056 4.056 27 C -0.135 4.135 28 H 0.070 0.930 29 H 0.008 0.992 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.146 0.854 38 H 0.174 0.826 39 H 0.258 0.742 40 H 0.235 0.765 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.070 -20.358 -5.661 21.518 hybrid contribution -0.118 0.113 1.095 1.107 sum -4.188 -20.245 -4.566 21.171 Atomic orbital electron populations 1.69994 1.06938 1.27043 1.51516 1.25693 0.95733 1.02157 0.94887 0.85678 0.78751 0.79742 0.78217 1.20190 1.20715 1.19646 1.21585 0.92844 0.92519 1.50357 0.93616 1.18647 0.93108 0.92291 0.93284 1.21521 0.98075 0.94653 0.99591 1.21994 0.96072 0.97622 0.90102 1.61759 1.23362 1.02913 1.37899 1.22808 0.95932 0.88655 1.02997 1.22078 0.93465 0.90105 0.89658 0.89745 1.86725 1.38402 1.92591 1.17890 1.23207 0.86694 0.84246 1.08562 1.49046 1.22094 1.16761 1.23263 1.22975 0.95267 0.85302 0.95080 1.21230 1.07412 0.92930 1.09972 1.42720 0.99025 1.01104 0.98698 1.94552 1.16944 1.65709 1.63680 1.94515 1.57992 1.66489 1.20742 1.24364 1.00237 0.89821 0.94548 1.78025 0.99044 1.18633 1.12482 1.22018 0.92712 0.91244 0.99580 1.21413 0.99108 0.95274 0.97719 0.93036 0.99209 0.93510 0.93786 0.95643 0.90487 0.88074 0.92338 0.76878 0.85438 0.82615 0.74242 0.76478 0.90247 0.96268 0.92033 0.95519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 11.37 21.45 0.24 -51.97 16 2 C 0.01 0.77 5.31 84.65 0.45 1.22 16 3 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -29.86 8.56 25.60 0.22 -29.64 16 8 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 9 C 0.05 2.25 2.16 -11.46 -0.02 2.22 16 10 C -0.10 -4.17 5.32 30.65 0.16 -4.00 16 11 C 0.07 2.22 5.29 86.32 0.46 2.67 16 12 N -0.53 -15.34 4.51 -896.37 -4.04 -19.39 16 13 C 0.02 0.40 4.63 86.30 0.40 0.80 16 14 C 0.11 1.51 3.05 30.59 0.09 1.61 16 15 H 0.08 1.53 6.47 -2.39 -0.02 1.52 16 16 O -0.55 -11.05 12.23 -148.98 -1.82 -12.87 16 17 C 0.09 0.50 6.18 86.38 0.53 1.03 16 18 N -0.33 -3.77 3.68 -348.06 -1.28 -5.05 16 19 C 0.17 1.72 11.13 83.54 0.93 2.65 16 20 C -0.22 -3.64 7.11 36.10 0.26 -3.38 16 21 N 0.07 1.66 4.45 -47.13 -0.21 1.45 16 22 O -0.20 -5.08 19.05 18.87 0.36 -4.72 16 23 O -0.19 -4.24 19.02 18.88 0.36 -3.88 16 24 C 0.10 1.66 11.75 85.23 1.00 2.67 16 25 N -0.26 -4.60 11.56 -57.02 -0.66 -5.25 16 26 C 0.07 2.44 5.46 86.33 0.47 2.91 16 27 C -0.10 -4.45 5.12 30.64 0.16 -4.29 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 2.15 6.24 -2.39 -0.01 2.14 16 34 H 0.10 1.22 7.98 -2.39 -0.02 1.20 16 35 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 36 H 0.38 5.34 9.05 -74.06 -0.67 4.67 16 37 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.16 -0.33 8.07 -2.39 -0.02 -0.35 16 39 H 0.24 0.42 8.06 -2.91 -0.02 0.39 16 40 H 0.22 2.78 8.06 -2.91 -0.02 2.75 16 41 H 0.08 2.32 8.01 -2.39 -0.02 2.30 16 42 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.06 3.20 6.17 -2.39 -0.01 3.19 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -74.54 367.07 0.44 -74.10 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.35 Total: 5.26 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.11 Total: -23.53 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -5.95 Total: -80.22 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.10 Total: -21.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.54 0.44 -74.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.244 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds