Wall clock time and date at job start Fri Apr 10 2020 18:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47154 * 2 1 4 4 C 1.52999 * 109.46804 * 119.99779 * 2 1 3 5 5 C 1.53118 * 109.52485 * 185.73793 * 4 2 1 6 6 C 1.53034 * 109.28340 * 177.62227 * 5 4 2 7 7 N 1.46850 * 109.52486 * 300.82744 * 6 5 4 8 8 C 1.46893 * 111.00207 * 185.83817 * 7 6 5 9 9 C 1.50707 * 109.47392 * 169.99649 * 8 7 6 10 10 O 1.21291 * 119.99636 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00139 * 179.72301 * 9 8 7 12 12 C 1.37098 * 120.00228 * 180.27314 * 11 9 8 13 13 H 1.08005 * 119.99690 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00385 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99679 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00146 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46992 * 90.00195 * 16 14 12 18 18 H 1.48507 * 109.47351 * 210.00026 * 16 14 12 19 19 H 1.48497 * 109.47198 * 330.00192 * 16 14 12 20 20 C 1.46844 * 111.20072 * 61.73633 * 7 6 5 21 21 C 1.53041 * 109.52344 * 298.26220 * 20 7 6 22 22 C 1.52997 * 109.46960 * 239.99447 * 2 1 3 23 23 F 1.39896 * 109.47498 * 295.11311 * 22 2 1 24 24 F 1.39899 * 109.46924 * 55.11917 * 22 2 1 25 25 F 1.39905 * 109.46841 * 175.11515 * 22 2 1 26 26 H 1.09005 * 109.46943 * 300.00057 * 1 2 3 27 27 H 1.09003 * 109.46948 * 60.00071 * 1 2 3 28 28 H 1.09003 * 109.47337 * 180.02562 * 1 2 3 29 29 H 0.96705 * 113.99680 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.52581 * 65.61122 * 4 2 1 31 31 H 1.09011 * 109.50123 * 57.68482 * 5 4 2 32 32 H 1.08996 * 109.50625 * 297.56753 * 5 4 2 33 33 H 1.08991 * 109.46561 * 180.80932 * 6 5 4 34 34 H 1.09002 * 109.46107 * 60.83860 * 6 5 4 35 35 H 1.09000 * 109.47457 * 49.99547 * 8 7 6 36 36 H 1.09003 * 109.47057 * 289.99765 * 8 7 6 37 37 H 0.97001 * 119.99871 * 0.27727 * 11 9 8 38 38 H 0.97001 * 119.99863 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.46009 * 58.27657 * 20 7 6 40 40 H 1.09002 * 109.46407 * 178.24875 * 20 7 6 41 41 H 1.09007 * 109.50199 * 299.23551 * 21 20 7 42 42 H 1.09001 * 109.50196 * 179.12090 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5643 -0.5982 1.3248 6 6 4.0626 -1.2699 2.6064 7 7 3.4432 -0.6251 3.7713 8 6 4.0025 -1.1511 5.0236 9 6 3.5311 -0.3056 6.1786 10 8 2.8015 0.6423 5.9782 11 7 3.9163 -0.6057 7.4348 12 6 3.4830 0.1601 8.4861 13 1 2.8326 1.0037 8.3077 14 6 3.8796 -0.1497 9.7813 15 7 4.6705 -1.1764 9.9984 16 14 3.2886 0.8934 11.2137 17 1 2.0141 0.3390 11.7370 18 1 4.3121 0.8821 12.2897 19 1 3.0697 2.2881 10.7534 20 6 1.9823 -0.7714 3.7450 21 6 1.4219 -0.0848 2.4973 22 6 2.0400 -0.7214 -1.2492 23 9 1.6677 -2.0688 -1.1943 24 9 1.4842 -0.1299 -2.3887 25 9 3.4345 -0.6249 -1.3067 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.9704 1.4235 0.0004 30 1 1.7614 -1.7739 1.2014 31 1 3.8444 0.4552 1.3336 32 1 4.0122 -1.0873 0.4598 33 1 5.1462 -1.1715 2.6703 34 1 3.7943 -2.3263 2.5907 35 1 5.0911 -1.1250 4.9747 36 1 3.6699 -2.1793 5.1664 37 1 4.5001 -1.3636 7.5950 38 1 4.9477 -1.3925 10.9025 39 1 1.7238 -1.8301 3.7239 40 1 1.5550 -0.3109 4.6358 41 1 1.6683 0.9767 2.5245 42 1 0.3391 -0.2071 2.4700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546639626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:05 Heat of formation + Delta-G solvation = -259.379977 kcal Electronic energy + Delta-G solvation = -29119.895722 eV Core-core repulsion = 24490.845166 eV Total energy + Delta-G solvation = -4629.050556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.24525 -48.76101 -48.66434 -41.00582 -39.95280 -38.11529 -35.92387 -34.59783 -33.25620 -32.32461 -31.65793 -28.79277 -27.56877 -26.44503 -24.38648 -24.08021 -22.10049 -21.02676 -20.75274 -19.88521 -19.71105 -19.45784 -19.31827 -17.75136 -17.51973 -16.74040 -16.50831 -16.29707 -15.85881 -15.71003 -15.52551 -15.32774 -15.25597 -15.14085 -15.02489 -14.87045 -14.79570 -14.75055 -14.36384 -14.15307 -13.70218 -13.50876 -13.42347 -13.22098 -13.07869 -12.89062 -12.70309 -12.42071 -12.40524 -12.23350 -12.11807 -12.02212 -11.67658 -11.46666 -11.22669 -11.03322 -10.21000 -9.97587 -9.14924 -8.45092 -5.93371 1.38524 1.42248 1.54917 1.58688 2.08135 2.29501 2.60786 2.64116 2.79914 2.89178 3.21991 3.24114 3.41196 3.49089 3.61927 3.89247 4.06570 4.21923 4.23355 4.36948 4.39774 4.50162 4.55665 4.56277 4.66779 4.70899 4.73660 4.82629 4.88897 5.00141 5.10144 5.17041 5.23109 5.41624 5.43039 5.92758 6.12932 6.29727 6.34265 6.62994 7.15208 7.59222 8.15204 8.72458 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.034022 B = 0.002563 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.795861 B =10921.221403 C =11274.918313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.112 3.888 3 O -0.537 6.537 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.058 3.942 7 N -0.533 5.533 8 C 0.057 3.943 9 C 0.442 3.558 10 O -0.612 6.612 11 N -0.576 5.576 12 C -0.330 4.330 13 H 0.079 0.921 14 C -0.014 4.014 15 N -0.922 5.922 16 Si 0.991 3.009 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.054 3.946 21 C -0.090 4.090 22 C 0.425 3.575 23 F -0.179 7.179 24 F -0.183 7.183 25 F -0.179 7.179 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.394 0.606 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.033 0.967 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -3.782 -22.386 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.068 3.932 3 O -0.346 6.346 4 C -0.129 4.129 5 C -0.166 4.166 6 C -0.069 4.069 7 N -0.258 5.258 8 C -0.074 4.074 9 C 0.229 3.771 10 O -0.498 6.498 11 N -0.214 5.214 12 C -0.460 4.460 13 H 0.097 0.903 14 C -0.213 4.213 15 N -0.563 5.563 16 Si 0.815 3.185 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.074 4.074 21 C -0.128 4.128 22 C 0.370 3.630 23 F -0.160 7.160 24 F -0.165 7.165 25 F -0.161 7.161 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.246 0.754 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.592 -2.612 -22.408 23.023 hybrid contribution 0.758 -1.018 0.881 1.546 sum -3.833 -3.630 -21.527 22.165 Atomic orbital electron populations 1.22013 0.88494 1.05092 1.05424 1.22395 0.98443 0.83553 0.88776 1.86669 1.29065 1.22803 1.96048 1.21889 0.96906 1.00894 0.93232 1.22027 0.93918 1.02708 0.97973 1.22140 0.99833 0.95912 0.89063 1.61492 1.05367 1.58074 1.00851 1.21715 1.01403 0.95806 0.88477 1.20787 0.84435 0.87504 0.84335 1.90463 1.41411 1.33003 1.84899 1.41948 1.45139 1.29084 1.05203 1.19647 1.28894 1.11210 0.86232 0.90323 1.26014 0.96554 0.98093 1.00660 1.69675 1.35093 1.28181 1.23394 0.84949 0.78136 0.78209 0.77184 1.19660 1.19638 1.19782 1.22150 0.87568 0.98075 0.99616 1.21463 0.99932 1.00136 0.91251 1.21764 0.75659 0.78171 0.87384 1.93176 1.91184 1.35095 1.96566 1.93177 1.85175 1.83758 1.54371 1.93107 1.30552 1.95883 1.96509 0.88914 0.90382 0.88417 0.75421 0.88430 0.90584 0.88515 0.89459 0.93979 0.87292 0.91765 0.77108 0.91375 0.94927 0.91940 0.91848 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.09 71.98 0.58 -1.67 16 2 C 0.11 1.88 0.48 -10.79 -0.01 1.87 16 3 O -0.54 -10.03 12.38 -148.98 -1.84 -11.88 16 4 C -0.11 -2.01 1.59 -10.71 -0.02 -2.03 16 5 C -0.13 -2.36 4.38 30.65 0.13 -2.22 16 6 C 0.06 1.27 5.46 86.32 0.47 1.74 16 7 N -0.53 -16.43 4.40 -900.94 -3.96 -20.39 16 8 C 0.06 1.94 5.45 85.56 0.47 2.41 16 9 C 0.44 20.82 7.46 87.66 0.65 21.47 16 10 O -0.61 -33.28 13.90 -3.06 -0.04 -33.32 16 11 N -0.58 -29.44 5.29 -306.98 -1.62 -31.07 16 12 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 15 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 16 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C 0.05 1.64 5.11 86.33 0.44 2.08 16 21 C -0.09 -2.14 4.71 30.65 0.14 -2.00 16 22 C 0.42 7.29 2.36 71.98 0.17 7.46 16 23 F -0.18 -3.10 16.18 44.97 0.73 -2.37 16 24 F -0.18 -3.51 16.60 44.97 0.75 -2.76 16 25 F -0.18 -3.02 13.67 44.97 0.61 -2.41 16 26 H 0.09 1.40 6.40 -2.38 -0.02 1.38 16 27 H 0.08 1.12 7.69 -2.39 -0.02 1.10 16 28 H 0.10 1.13 7.93 -2.39 -0.02 1.11 16 29 H 0.39 5.70 6.64 -74.05 -0.49 5.21 16 30 H 0.10 1.63 7.52 -2.39 -0.02 1.61 16 31 H 0.08 1.44 6.59 -2.38 -0.02 1.42 16 32 H 0.10 1.49 5.61 -2.39 -0.01 1.48 16 33 H 0.09 1.75 8.01 -2.39 -0.02 1.73 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 3.26 7.99 -2.39 -0.02 3.24 16 36 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 37 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 38 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 2.48 5.78 -2.39 -0.01 2.47 16 41 H 0.06 1.79 7.79 -2.38 -0.02 1.77 16 42 H 0.08 1.72 6.50 -2.39 -0.02 1.71 16 Total: -1.00 -66.85 338.85 1.11 -65.74 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.14 Total: 32.04 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 4.32 Total: 10.96 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -5.30 Total: -100.96 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.89 Total: -45.20 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 2.09 Total: -7.54 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.85 1.11 -65.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546639626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.643 kcal (2) G-P(sol) polarization free energy of solvation -66.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds