Wall clock time and date at job start Fri Apr 10 2020 18:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47089 * 2 1 4 4 C 1.50693 * 109.47373 * 239.99758 * 2 1 3 5 5 O 1.21288 * 120.00441 * 267.75110 * 4 2 1 6 6 N 1.34781 * 119.99934 * 87.74416 * 4 2 1 7 7 C 1.47422 * 125.64848 * 359.97438 * 6 4 2 8 8 C 1.54909 * 104.83190 * 155.90061 * 7 6 4 9 9 C 1.55163 * 101.57941 * 37.01495 * 8 7 6 10 10 O 1.42903 * 110.72280 * 82.85589 * 9 8 7 11 11 C 1.50696 * 110.71858 * 205.95474 * 9 8 7 12 12 H 1.08003 * 120.00232 * 116.15475 * 11 9 8 13 13 C 1.37879 * 119.99855 * 296.15378 * 11 9 8 14 14 N 1.31510 * 120.00055 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99890 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47132 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47174 * 120.00037 * 15 13 11 18 18 H 1.48500 * 109.47118 * 240.00187 * 15 13 11 19 19 C 1.47024 * 125.64704 * 180.02562 * 6 4 2 20 20 N 1.46910 * 109.46828 * 119.99822 * 2 1 3 21 21 C 1.46903 * 110.99249 * 174.19663 * 20 2 1 22 22 C 1.46893 * 110.99834 * 298.14938 * 20 2 1 23 23 C 1.53000 * 109.46622 * 163.87648 * 22 20 2 24 24 F 1.39906 * 109.47117 * 65.39508 * 23 22 20 25 25 F 1.39907 * 109.47362 * 185.39230 * 23 22 20 26 26 F 1.39899 * 109.47481 * 305.39162 * 23 22 20 27 27 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47210 * 300.00215 * 1 2 3 29 29 H 1.08995 * 109.47389 * 60.00099 * 1 2 3 30 30 H 1.09001 * 110.36233 * 37.06856 * 7 6 4 31 31 H 1.08999 * 110.36817 * 274.74701 * 7 6 4 32 32 H 1.08998 * 111.00815 * 278.93867 * 8 7 6 33 33 H 1.09004 * 111.03493 * 155.09381 * 8 7 6 34 34 H 0.96702 * 113.99349 * 61.45444 * 10 9 8 35 35 H 0.97005 * 119.99905 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.88362 * 61.60979 * 19 6 4 37 37 H 1.09003 * 109.88010 * 300.43716 * 19 6 4 38 38 H 1.09002 * 109.47292 * 65.21221 * 21 20 2 39 39 H 1.09003 * 109.46739 * 185.19966 * 21 20 2 40 40 H 1.08997 * 109.47703 * 305.19834 * 21 20 2 41 41 H 1.09000 * 109.47638 * 283.87517 * 22 20 2 42 42 H 1.08997 * 109.47587 * 43.88134 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2734 -1.8984 -1.1889 6 7 2.2137 -0.0257 -2.3770 7 6 1.9607 1.4141 -2.5672 8 6 2.8632 1.8214 -3.7586 9 6 2.7684 0.5654 -4.6647 10 8 1.5859 0.6081 -5.4660 11 6 3.9940 0.4403 -5.5325 12 1 4.6544 -0.4063 -5.4156 13 6 4.2724 1.4067 -6.4757 14 7 3.4686 2.4378 -6.6177 15 14 5.7913 1.2513 -7.5520 16 1 6.5244 0.0095 -7.1973 17 1 5.3834 1.1943 -8.9786 18 1 6.6734 2.4262 -7.3358 19 6 2.6956 -0.5913 -3.6457 20 7 2.0196 -0.6925 1.1996 21 6 3.4815 -0.8333 1.1661 22 6 1.5851 -0.0013 2.4207 23 6 1.7533 -0.9339 3.6218 24 9 3.1127 -1.1989 3.8197 25 9 1.2263 -0.3224 4.7645 26 9 1.0747 -2.1331 3.3798 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 2.2404 1.9698 -1.6722 31 1 0.9120 1.5863 -2.8093 32 1 3.8891 1.9908 -3.4316 33 1 2.4670 2.7005 -4.2669 34 1 1.5471 1.3625 -6.0698 35 1 3.6646 3.1179 -7.2811 36 1 2.0014 -1.3537 -3.9991 37 1 3.6859 -1.0248 -3.5058 38 1 3.9428 0.1531 1.2141 39 1 3.8087 -1.4291 2.0183 40 1 3.7778 -1.3285 0.2414 41 1 2.1909 0.8929 2.5673 42 1 0.5369 0.2818 2.3245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:17 Heat of formation + Delta-G solvation = -220.287079 kcal Electronic energy + Delta-G solvation = -29137.463737 eV Core-core repulsion = 24510.108376 eV Total energy + Delta-G solvation = -4627.355361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.23784 -47.82450 -47.62366 -40.10934 -38.06354 -36.70690 -34.42594 -32.25356 -31.89752 -29.77339 -29.64738 -28.41677 -25.57408 -25.24821 -24.03269 -22.59583 -21.61259 -19.77413 -18.94507 -18.71085 -18.40990 -17.83848 -17.26951 -16.69013 -15.94989 -15.57944 -15.11336 -14.96516 -14.90386 -14.63355 -14.51918 -14.24235 -14.16170 -13.96176 -13.84684 -13.77593 -13.38770 -13.26764 -12.99323 -12.48577 -12.38834 -12.11488 -12.08639 -11.89562 -11.59327 -11.52986 -11.39283 -11.36319 -11.28940 -10.95813 -10.70678 -10.50216 -10.19411 -9.52808 -9.36190 -8.75742 -8.70039 -8.29614 -8.10639 -6.35705 -4.42619 2.44533 2.89296 3.09075 3.14805 3.24362 3.29277 3.58802 3.64248 3.83915 4.21864 4.22789 4.56943 4.76043 4.81502 4.88420 4.91602 4.95804 5.28940 5.36573 5.42014 5.47447 5.58282 5.68949 5.80129 5.89498 6.00997 6.03002 6.10726 6.37564 6.48301 6.55160 6.60630 6.80311 6.87952 7.19883 7.25530 7.67068 7.94779 7.99020 8.52817 8.60474 9.24624 9.34587 10.72246 Molecular weight = 324.14amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.002838 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.883799 B = 9863.908361 C =10146.228515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 H 0.067 0.933 4 C 0.527 3.473 5 O -0.532 6.532 6 N -0.607 5.607 7 C 0.093 3.907 8 C -0.136 4.136 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.534 4.534 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.124 3.876 20 N -0.514 5.514 21 C -0.003 4.003 22 C 0.003 3.997 23 C 0.460 3.540 24 F -0.183 7.183 25 F -0.186 7.186 26 F -0.170 7.170 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.384 0.616 35 H 0.268 0.732 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 1.602 16.794 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 H 0.085 0.915 4 C 0.314 3.686 5 O -0.408 6.408 6 N -0.340 5.340 7 C -0.029 4.029 8 C -0.175 4.175 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.730 3.270 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.002 3.998 20 N -0.238 5.238 21 C -0.150 4.150 22 C -0.127 4.127 23 C 0.405 3.595 24 F -0.164 7.164 25 F -0.168 7.168 26 F -0.151 7.151 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.834 0.037 17.119 17.788 hybrid contribution 1.347 1.359 -0.709 2.040 sum -3.488 1.396 16.410 16.834 Atomic orbital electron populations 1.21831 0.91596 1.04097 1.02593 1.21619 0.97669 0.96116 0.88585 0.91526 1.19696 0.78683 0.87109 0.83162 1.90693 1.51323 1.14780 1.84046 1.48675 1.64092 1.10618 1.10618 1.22547 1.00472 0.80394 0.99497 1.23326 0.98146 1.01633 0.94403 1.19453 0.84625 0.88164 0.86994 1.86127 1.42993 1.53323 1.57026 1.21556 1.08101 1.08458 1.19137 0.91682 1.24980 0.96988 0.94476 0.96544 1.69645 1.37686 1.11228 1.35073 0.86355 0.82253 0.78250 0.80098 1.19560 1.20724 1.20829 1.22085 0.98784 0.97399 0.81519 1.61573 1.13585 1.49368 0.99317 1.22965 0.85033 1.01016 1.05969 1.23336 1.06152 0.94420 0.88806 1.20427 0.73713 0.81112 0.84268 1.93119 1.33186 1.94605 1.95494 1.93181 1.86624 1.83048 1.53914 1.93222 1.79741 1.47946 1.94202 0.90531 0.91579 0.90834 0.92375 0.91717 0.91447 0.89406 0.76532 0.92203 0.91958 0.90961 0.95114 0.89545 0.88999 0.89949 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.05 37.16 0.34 -1.21 16 2 C 0.07 0.91 2.02 -68.86 -0.14 0.77 16 3 H 0.07 0.75 6.60 -51.93 -0.34 0.41 16 4 C 0.53 9.23 5.93 -10.99 -0.07 9.16 16 5 O -0.53 -11.12 15.46 5.55 0.09 -11.04 16 6 N -0.61 -11.18 3.33 -170.52 -0.57 -11.75 16 7 C 0.09 1.54 6.67 -2.53 -0.02 1.53 16 8 C -0.14 -2.75 5.57 -24.58 -0.14 -2.89 16 9 C 0.25 5.71 0.85 -89.93 -0.08 5.63 16 10 O -0.59 -14.13 13.06 -35.23 -0.46 -14.59 16 11 C -0.53 -13.53 8.22 -34.44 -0.28 -13.82 16 12 H 0.06 1.67 7.56 -52.48 -0.40 1.27 16 13 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 14 N -0.90 -22.22 10.69 55.43 0.59 -21.63 16 15 Si 0.90 19.77 29.54 -169.99 -5.02 14.74 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.12 2.67 6.22 -3.06 -0.02 2.65 16 20 N -0.51 -6.45 4.18 -236.29 -0.99 -7.44 16 21 C 0.00 -0.03 8.78 60.07 0.53 0.49 16 22 C 0.00 0.03 4.96 -3.83 -0.02 0.01 16 23 C 0.46 4.76 3.25 37.16 0.12 4.88 16 24 F -0.18 -2.04 14.48 2.25 0.03 -2.01 16 25 F -0.19 -1.82 17.32 2.25 0.04 -1.78 16 26 F -0.17 -2.10 17.14 2.25 0.04 -2.06 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.51 6.14 -51.93 -0.32 0.19 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.79 6.78 -51.93 -0.35 0.43 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 33 H 0.09 1.84 7.64 -51.93 -0.40 1.45 16 34 H 0.38 9.29 7.28 45.56 0.33 9.62 16 35 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 36 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 37 H 0.07 1.60 7.66 -51.93 -0.40 1.20 16 38 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.09 1.07 5.58 -51.93 -0.29 0.78 16 40 H 0.09 1.45 5.80 -51.93 -0.30 1.15 16 41 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 42 H 0.12 0.89 5.71 -51.93 -0.30 0.59 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -28.08 344.99 -5.75 -33.83 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.84 Total: 9.60 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 0.13 Total: 8.93 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.96 Total: -40.82 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.37 Total: -25.63 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.11 Total: -5.86 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.08 -5.75 -33.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.460 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds